Wall clock time and date at job start Tue Mar 31 2020 10:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47344 * 2 1 4 4 C 1.53001 * 109.46866 * 240.00108 * 2 1 3 5 5 N 1.46506 * 109.47366 * 174.99948 * 4 2 1 6 6 C 1.34940 * 126.03516 * 124.99973 * 5 4 2 7 7 C 1.35324 * 107.74444 * 179.97438 * 6 5 4 8 8 C 1.39865 * 107.91829 * 359.97438 * 7 6 5 9 9 N 1.30840 * 108.20546 * 359.74412 * 8 7 6 10 10 O 1.45203 * 109.47335 * 120.00772 * 2 1 3 11 11 C 1.34759 * 116.99358 * 269.99878 * 10 2 1 12 12 O 1.21511 * 120.00519 * 359.97438 * 11 10 2 13 13 C 1.47400 * 119.99476 * 179.97438 * 11 10 2 14 14 C 1.39727 * 120.20522 * 0.02562 * 13 11 10 15 15 C 1.37802 * 119.91602 * 179.97438 * 14 13 11 16 16 C 1.38595 * 120.33175 * 0.02562 * 15 14 13 17 17 C 1.38026 * 120.41134 * 0.02562 * 16 15 14 18 18 C 1.38836 * 120.07579 * 359.97438 * 17 16 15 19 19 O 1.35509 * 120.16201 * 180.02562 * 18 17 16 20 20 C 1.34813 * 116.99997 * 354.40195 * 19 18 17 21 21 H 1.07997 * 120.00110 * 5.06682 * 20 19 18 22 22 C 1.38700 * 120.00165 * 185.06412 * 20 19 18 23 23 N 1.31523 * 120.00071 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00438 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46878 * 59.99995 * 24 22 20 26 26 H 1.48498 * 109.47200 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46885 * 300.00137 * 24 22 20 28 28 H 1.08999 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46727 * 299.99772 * 1 2 3 30 30 H 1.09008 * 109.46962 * 59.99261 * 1 2 3 31 31 H 1.08996 * 109.47559 * 295.00294 * 4 2 1 32 32 H 1.09008 * 109.47278 * 55.00336 * 4 2 1 33 33 H 1.07997 * 126.13124 * 0.02562 * 6 5 4 34 34 H 1.08000 * 126.03681 * 180.02562 * 7 6 5 35 35 H 1.08005 * 125.89452 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.04436 * 359.97438 * 14 13 11 37 37 H 1.08002 * 119.83770 * 180.02562 * 15 14 13 38 38 H 1.07994 * 119.79097 * 180.27612 * 16 15 14 39 39 H 1.07998 * 119.96115 * 179.97438 * 17 16 15 40 40 H 0.96995 * 120.00354 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.6179 -1.3111 6 6 4.3653 -1.6487 -1.4096 7 6 5.6170 -1.1351 -1.4391 8 6 5.5128 0.2573 -1.3564 9 7 4.2440 0.5688 -1.2855 10 8 2.0140 -0.6846 1.1855 11 6 2.2180 0.0668 2.2854 12 8 1.9978 1.2614 2.2545 13 6 2.7082 -0.5605 3.5259 14 6 2.9632 -1.9337 3.5659 15 6 3.4219 -2.5139 4.7287 16 6 3.6314 -1.7421 5.8606 17 6 3.3829 -0.3847 5.8366 18 6 2.9205 0.2175 4.6742 19 8 2.6764 1.5502 4.6485 20 6 2.7911 2.2161 5.8150 21 1 3.1455 1.7032 6.6969 22 6 2.4540 3.5598 5.8827 23 7 2.0229 4.1845 4.8086 24 14 2.6135 4.4827 7.4989 25 1 4.0267 4.4440 7.9535 26 1 2.1944 5.8942 7.3064 27 1 1.7470 3.8435 8.5215 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.7516 -1.7715 -1.2057 32 1 1.6053 -0.2617 -2.1371 33 1 4.1055 -2.6958 -1.4573 34 1 6.5341 -1.7004 -1.5142 35 1 6.3372 0.9550 -1.3553 36 1 2.8012 -2.5397 2.6868 37 1 3.6190 -3.5754 4.7581 38 1 3.9953 -2.2051 6.7659 39 1 3.5483 0.2098 6.7229 40 1 1.7868 5.1241 4.8559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176281852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:00 Heat of formation + Delta-G solvation = -24.888111 kcal Electronic energy + Delta-G solvation = -26205.214087 eV Core-core repulsion = 22373.267610 eV Total energy + Delta-G solvation = -3831.946477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.07578 -41.54141 -40.45940 -38.18542 -37.68946 -35.08964 -34.40051 -32.58261 -31.86914 -30.83622 -30.66315 -27.51678 -27.36132 -25.54131 -23.62041 -22.92867 -22.07136 -21.79770 -21.21844 -19.93847 -19.39590 -18.40281 -18.28290 -17.41105 -16.94828 -16.40340 -16.31469 -16.04676 -15.68783 -15.60084 -15.35130 -15.09654 -14.85155 -14.49018 -14.28471 -14.15967 -13.80685 -13.63596 -13.59865 -13.25964 -13.05140 -13.00686 -12.74674 -12.55119 -12.43877 -12.19628 -12.13258 -11.75150 -11.61612 -11.47096 -11.09001 -10.87454 -10.37965 -9.95285 -9.48124 -9.14723 -8.50742 -6.22731 -0.06338 0.66322 1.02683 1.30374 1.43731 1.48868 1.56917 1.74353 1.74728 1.98949 2.12243 2.79563 3.12505 3.33283 3.38119 3.77383 3.85628 3.94139 4.04821 4.06225 4.12147 4.21635 4.34738 4.39738 4.47918 4.51816 4.69910 4.73299 4.79284 4.92007 4.94427 5.02118 5.07419 5.09871 5.17066 5.38954 5.44643 5.58699 5.63295 5.74931 5.90117 6.10152 6.20632 6.80027 6.87374 6.98383 7.69131 8.69283 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.004132 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.026040 B = 6775.149100 C = 7458.045636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.065 3.935 3 H 0.048 0.952 4 C 0.143 3.857 5 N -0.380 5.380 6 C 0.065 3.935 7 C -0.288 4.288 8 C 0.026 3.974 9 N -0.354 5.354 10 O -0.344 6.344 11 C 0.499 3.501 12 O -0.532 6.532 13 C -0.239 4.239 14 C -0.011 4.011 15 C -0.202 4.202 16 C -0.027 4.027 17 C -0.257 4.257 18 C 0.154 3.846 19 O -0.189 6.189 20 C -0.430 4.430 21 H 0.112 0.888 22 C -0.021 4.021 23 N -0.905 5.905 24 Si 1.025 2.975 25 H -0.253 1.253 26 H -0.274 1.274 27 H -0.251 1.251 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.217 0.783 34 H 0.171 0.829 35 H 0.191 0.809 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.131 0.869 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 -18.183 -8.957 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.066 0.934 4 C 0.023 3.977 5 N -0.162 5.162 6 C -0.081 4.081 7 C -0.317 4.317 8 C -0.159 4.159 9 N -0.176 5.176 10 O -0.262 6.262 11 C 0.347 3.653 12 O -0.422 6.422 13 C -0.242 4.242 14 C -0.029 4.029 15 C -0.221 4.221 16 C -0.045 4.045 17 C -0.276 4.276 18 C 0.099 3.901 19 O -0.091 6.091 20 C -0.505 4.505 21 H 0.129 0.871 22 C -0.221 4.221 23 N -0.540 5.540 24 Si 0.842 3.158 25 H -0.177 1.177 26 H -0.198 1.198 27 H -0.175 1.175 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.121 0.879 31 H 0.168 0.832 32 H 0.144 0.856 33 H 0.234 0.766 34 H 0.188 0.812 35 H 0.208 0.792 36 H 0.174 0.826 37 H 0.186 0.814 38 H 0.179 0.821 39 H 0.148 0.852 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.852 -16.496 -9.184 18.900 hybrid contribution 0.564 0.980 0.512 1.241 sum 1.416 -15.517 -8.672 17.832 Atomic orbital electron populations 1.22118 0.91376 1.04894 1.03262 1.23136 0.96290 0.96785 0.82840 0.93381 1.22177 0.74240 1.05410 0.95890 1.48839 1.07178 1.03956 1.56250 1.23291 0.89610 0.95853 0.99328 1.21865 0.99045 0.93546 1.17243 1.24321 0.94337 0.97826 0.99435 1.77368 1.05975 1.08230 1.26059 1.86484 1.78215 1.41527 1.20023 1.21386 0.74704 0.84955 0.84282 1.90984 1.49302 1.17671 1.84207 1.18538 1.19814 0.95627 0.90222 1.21361 0.91764 0.90122 0.99648 1.21232 1.06955 1.01676 0.92198 1.21546 0.92053 0.91314 0.99603 1.21297 1.10843 0.97632 0.97828 1.20031 0.91467 0.84521 0.94123 1.84157 1.74998 1.15399 1.34553 1.22065 1.47021 0.93923 0.87479 0.87121 1.26840 0.94995 0.96652 1.03582 1.70314 1.41082 1.11332 1.31285 0.84588 0.80058 0.76639 0.74472 1.17665 1.19825 1.17504 0.88140 0.94929 0.87918 0.83188 0.85588 0.76597 0.81174 0.79244 0.82624 0.81428 0.82052 0.85181 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 9.55 71.98 0.69 -3.37 16 2 C 0.07 2.08 2.69 30.59 0.08 2.16 16 3 H 0.05 2.05 7.08 -2.39 -0.02 2.03 16 4 C 0.14 2.98 6.18 86.38 0.53 3.51 16 5 N -0.38 -10.26 3.63 -348.04 -1.26 -11.52 16 6 C 0.07 1.35 11.45 83.54 0.96 2.30 16 7 C -0.29 -6.59 10.80 21.99 0.24 -6.36 16 8 C 0.03 0.77 12.02 85.23 1.02 1.79 16 9 N -0.35 -12.50 12.35 -57.02 -0.70 -13.21 16 10 O -0.34 -12.89 9.08 -56.70 -0.52 -13.40 16 11 C 0.50 24.68 7.86 70.23 0.55 25.24 16 12 O -0.53 -32.56 14.43 26.80 0.39 -32.17 16 13 C -0.24 -11.14 5.89 -20.00 -0.12 -11.25 16 14 C -0.01 -0.37 9.61 22.53 0.22 -0.15 16 15 C -0.20 -5.61 10.02 22.25 0.22 -5.38 16 16 C -0.03 -0.84 10.03 22.30 0.22 -0.62 16 17 C -0.26 -10.97 9.16 22.36 0.20 -10.77 16 18 C 0.15 8.12 6.66 22.92 0.15 8.27 16 19 O -0.19 -12.18 7.84 0.98 0.01 -12.17 16 20 C -0.43 -26.02 9.49 67.93 0.64 -25.37 16 21 H 0.11 5.94 5.21 -2.91 -0.02 5.92 16 22 C -0.02 -1.26 5.49 84.85 0.47 -0.79 16 23 N -0.90 -59.55 13.67 21.62 0.30 -59.25 16 24 Si 1.02 44.06 29.55 68.60 2.03 46.08 16 25 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 28 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.15 1.76 8.07 -2.39 -0.02 1.74 16 32 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.22 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.19 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.16 4.13 7.61 -2.91 -0.02 4.11 16 37 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.13 5.52 5.64 -2.91 -0.02 5.51 16 40 H 0.27 16.42 8.31 -92.71 -0.77 15.65 16 Total: -1.00 -95.18 353.56 7.39 -87.79 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 1.07 Total: 28.63 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 6.09 Total: -20.79 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -1.67 Total: -83.98 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: -0.12 Total: -57.74 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -95.18 7.39 -87.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176281852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.906 kcal (2) G-P(sol) polarization free energy of solvation -95.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds