Wall clock time and date at job start Tue Mar 31 2020 11:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35963 * 116.99796 * 2 1 4 4 C 1.38078 * 120.00050 * 359.97114 * 3 2 1 5 5 C 1.39978 * 119.83607 * 180.02562 * 4 3 2 6 6 C 1.46963 * 120.07386 * 180.02562 * 5 4 3 7 7 C 1.35035 * 119.99832 * 179.97438 * 6 5 4 8 8 C 1.46253 * 119.99776 * 180.02562 * 7 6 5 9 9 O 1.21722 * 120.00371 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99535 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00066 * 359.97438 * 10 8 7 12 12 C 1.46503 * 119.99808 * 180.02562 * 10 8 7 13 13 C 1.47200 * 109.47244 * 89.99954 * 12 10 8 14 14 N 9.70742 * 109.33795 * 195.58778 * 3 1 2 15 15 C 1.40025 * 119.84332 * 0.02562 * 5 4 3 16 16 C 1.37645 * 120.00280 * 0.02562 * 15 5 4 17 17 C 1.39056 * 120.15966 * 359.97438 * 16 15 5 18 18 O 1.35619 * 119.92189 * 180.02562 * 17 16 15 19 19 C 1.34760 * 116.99758 * 354.37702 * 18 17 16 20 20 H 1.08008 * 120.00105 * 5.06936 * 19 18 17 21 21 C 1.38701 * 120.00139 * 185.06246 * 19 18 17 22 22 N 1.31519 * 119.99764 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00325 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46744 * 90.00011 * 23 21 19 25 25 H 1.48495 * 109.47140 * 210.00087 * 23 21 19 26 26 H 1.48496 * 109.46837 * 330.00111 * 23 21 19 27 27 H 1.09005 * 109.47749 * 300.00536 * 1 2 3 28 28 H 1.09009 * 109.47262 * 60.00571 * 1 2 3 29 29 H 1.09003 * 109.47293 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.07640 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.00506 * 359.96404 * 6 5 4 32 32 H 1.08002 * 119.99659 * 359.97438 * 7 6 5 33 33 H 1.08998 * 109.46878 * 90.00148 * 11 10 8 34 34 H 1.09003 * 109.46902 * 210.00406 * 11 10 8 35 35 H 1.09000 * 109.46875 * 330.00087 * 11 10 8 36 36 H 1.08999 * 109.47001 * 209.99893 * 12 10 8 37 37 H 1.08999 * 109.47034 * 329.99594 * 12 10 8 38 38 H 1.08003 * 119.99766 * 180.29962 * 15 5 4 39 39 H 1.07997 * 119.92052 * 180.02562 * 16 15 5 40 40 H 0.97006 * 120.00234 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2941 2.3695 -0.0006 5 6 1.9331 3.6149 -0.0011 6 6 1.1378 4.8507 -0.0012 7 6 1.7558 6.0513 -0.0012 8 6 0.9643 7.2812 -0.0007 9 8 -0.2515 7.2225 -0.0008 10 7 1.5812 8.4795 -0.0012 11 6 3.0446 8.5500 -0.0017 12 6 0.7884 9.7115 -0.0002 13 6 0.5244 10.1239 1.3880 14 7 0.3172 10.4411 2.4614 15 6 3.3318 3.6804 -0.0016 16 6 4.0751 2.5218 -0.0021 17 6 3.4404 1.2846 -0.0015 18 8 4.1775 0.1462 -0.0015 19 6 5.5130 0.2821 -0.1196 20 1 5.9572 1.2666 -0.1263 21 6 6.3173 -0.8423 -0.2324 22 7 5.7764 -2.0411 -0.2245 23 14 8.1687 -0.6540 -0.3954 24 1 8.7868 -0.6526 0.9548 25 1 8.7134 -1.7854 -1.1880 26 1 8.4774 0.6257 -1.0825 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2155 2.3143 -0.0007 31 1 0.0590 4.7987 -0.0014 32 1 2.8346 6.1033 -0.0007 33 1 3.4071 8.5673 -1.0295 34 1 3.3648 9.4566 0.5118 35 1 3.4505 7.6787 0.5122 36 1 1.3397 10.4987 -0.5145 37 1 -0.1571 9.5355 -0.5130 38 1 3.8275 4.6399 0.0029 39 1 5.1538 2.5739 -0.0020 40 1 6.3389 -2.8275 -0.3030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263655962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:33 Heat of formation + Delta-G solvation = -13.559640 kcal Electronic energy + Delta-G solvation = -24624.876011 eV Core-core repulsion = 20793.420774 eV Total energy + Delta-G solvation = -3831.455237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10803 -39.69955 -37.71996 -37.03438 -36.54715 -35.47252 -33.17340 -32.33585 -29.97998 -29.64271 -28.43509 -26.90581 -26.31979 -25.51952 -23.35631 -21.81209 -20.83854 -18.85658 -18.27376 -18.18263 -17.89886 -17.12005 -16.64917 -15.94132 -15.45524 -15.24448 -15.00118 -14.81738 -14.57035 -14.03551 -13.97910 -13.82851 -13.64221 -13.49116 -13.28132 -13.08348 -12.88269 -12.70075 -12.39577 -12.11567 -11.86325 -11.86009 -11.70711 -11.49182 -11.15421 -11.06491 -10.83043 -10.74428 -10.54701 -9.96873 -9.63736 -9.48645 -9.20503 -8.88839 -8.03615 -6.97144 -6.66547 -4.17522 0.90845 2.06167 2.07767 2.42153 2.48899 3.01773 3.02523 3.07996 3.12432 3.35195 3.78001 3.79176 3.90560 4.41560 4.49047 4.77590 4.83920 4.86747 4.96397 5.05322 5.10001 5.24261 5.38373 5.42762 5.51555 5.51882 5.54638 5.65550 5.80323 5.94177 6.00818 6.16181 6.33003 6.41057 6.51875 6.77154 6.93216 7.02782 7.11309 7.20589 7.24349 7.42260 7.73786 8.03141 8.05826 8.76329 9.44729 10.49048 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002706 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.952605 B =10345.612452 C =11841.930730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.135 4.135 5 C -0.170 4.170 6 C 0.044 3.956 7 C -0.286 4.286 8 C 0.560 3.440 9 O -0.549 6.549 10 N -0.620 5.620 11 C 0.076 3.924 12 C 0.213 3.787 13 C 0.189 3.811 14 N -0.424 5.424 15 C -0.057 4.057 16 C -0.226 4.226 17 C 0.149 3.851 18 O -0.145 6.145 19 C -0.391 4.391 20 H 0.098 0.902 21 C 0.041 3.959 22 N -0.843 5.843 23 Si 0.946 3.054 24 H -0.271 1.271 25 H -0.275 1.275 26 H -0.264 1.264 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.138 0.862 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 15.970 -3.328 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.154 4.154 5 C -0.172 4.172 6 C 0.024 3.976 7 C -0.307 4.307 8 C 0.355 3.645 9 O -0.428 6.428 10 N -0.354 5.354 11 C -0.066 4.066 12 C 0.086 3.914 13 C -0.131 4.131 14 N -0.102 5.102 15 C -0.075 4.075 16 C -0.245 4.245 17 C 0.092 3.908 18 O -0.046 6.046 19 C -0.466 4.466 20 H 0.116 0.884 21 C -0.166 4.166 22 N -0.475 5.475 23 Si 0.769 3.231 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.189 1.189 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.155 0.845 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.010 15.663 -1.743 16.537 hybrid contribution 0.873 0.188 -0.401 0.979 sum -4.137 15.851 -2.144 16.522 Atomic orbital electron populations 1.22923 0.80126 1.03110 1.00435 1.86238 1.19608 1.26175 1.89698 1.18051 0.89383 0.84636 1.07275 1.20884 0.98624 0.90914 1.05001 1.18144 0.92788 0.91349 1.14891 1.22286 0.99176 0.91013 0.85114 1.22465 1.00004 0.91156 1.17060 1.18551 0.87527 0.83699 0.74733 1.90797 1.14177 1.87166 1.50658 1.47661 1.07360 1.04718 1.75700 1.21954 0.78378 1.03699 1.02617 1.18798 1.00026 0.87808 0.84754 1.30058 0.93438 0.93631 0.95929 1.81286 1.08496 1.08450 1.11960 1.20915 0.92451 0.97329 0.96793 1.20827 1.00730 0.90732 1.12253 1.18893 0.88272 0.87649 0.95974 1.83989 1.19771 1.25919 1.74900 1.21534 0.78351 0.95121 1.51575 0.88442 1.25430 1.00970 0.94136 0.96036 1.70046 1.36739 0.97868 1.42811 0.85638 0.79770 0.78750 0.78909 1.19604 1.20021 1.18870 0.93435 0.93405 0.88947 0.85825 0.85954 0.85256 0.91596 0.91123 0.89962 0.85880 0.85435 0.86626 0.84473 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.32 10.28 -34.24 -0.35 -6.67 16 3 C 0.05 1.08 6.70 -39.12 -0.26 0.81 16 4 C -0.13 -2.34 8.77 -38.99 -0.34 -2.68 16 5 C -0.17 -2.79 5.87 -105.04 -0.62 -3.41 16 6 C 0.04 0.63 9.45 -37.19 -0.35 0.27 16 7 C -0.29 -3.58 8.61 -37.50 -0.32 -3.90 16 8 C 0.56 7.03 7.60 -13.04 -0.10 6.93 16 9 O -0.55 -8.62 15.81 5.17 0.08 -8.53 16 10 N -0.62 -5.39 2.83 -186.65 -0.53 -5.92 16 11 C 0.08 0.43 10.15 59.85 0.61 1.04 16 12 C 0.21 1.38 5.88 -6.83 -0.04 1.34 16 13 C 0.19 1.92 15.77 -20.68 -0.33 1.59 16 14 N -0.42 -5.66 18.55 42.24 0.78 -4.88 16 15 C -0.06 -0.94 9.40 -39.13 -0.37 -1.30 16 16 C -0.23 -4.47 9.14 -39.49 -0.36 -4.84 16 17 C 0.15 3.45 6.67 -38.76 -0.26 3.20 16 18 O -0.15 -3.99 9.52 -13.96 -0.13 -4.12 16 19 C -0.39 -10.22 9.48 30.90 0.29 -9.93 16 20 H 0.10 2.29 5.18 -52.48 -0.27 2.02 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 22 N -0.84 -23.54 13.67 55.48 0.76 -22.78 16 23 Si 0.95 19.06 29.55 -169.99 -5.02 14.04 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 27 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.05 0.61 7.66 -51.92 -0.40 0.21 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.12 1.80 6.28 -52.49 -0.33 1.47 16 31 H 0.12 1.72 7.52 -52.49 -0.39 1.33 16 32 H 0.13 1.36 4.21 -52.49 -0.22 1.14 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 35 H 0.08 0.51 6.09 -51.93 -0.32 0.19 16 36 H 0.12 0.27 8.07 -51.93 -0.42 -0.15 16 37 H 0.13 0.83 7.42 -51.93 -0.39 0.44 16 38 H 0.12 1.52 6.15 -52.48 -0.32 1.20 16 39 H 0.14 2.63 5.62 -52.49 -0.29 2.34 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -34.41 354.86 -4.77 -39.18 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.15 Total: 2.82 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.55 Total: -8.48 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 1.01 Total: -33.58 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.40 Total: -19.33 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.41 -4.77 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263655962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.616 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds