Wall clock time and date at job start Tue Mar 31 2020 11:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35963 * 116.99796 * 2 1 4 4 C 1.38078 * 120.00050 * 359.97114 * 3 2 1 5 5 C 1.39978 * 119.83607 * 180.02562 * 4 3 2 6 6 C 1.46963 * 120.07386 * 180.02562 * 5 4 3 7 7 C 1.35035 * 119.99832 * 179.97438 * 6 5 4 8 8 C 1.46253 * 119.99776 * 180.02562 * 7 6 5 9 9 O 1.21722 * 120.00371 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99535 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00066 * 359.97438 * 10 8 7 12 12 C 1.46503 * 119.99808 * 180.02562 * 10 8 7 13 13 C 1.47200 * 109.47244 * 89.99954 * 12 10 8 14 14 N 9.70742 * 109.33795 * 195.58778 * 3 1 2 15 15 C 1.40025 * 119.84332 * 0.02562 * 5 4 3 16 16 C 1.37645 * 120.00280 * 0.02562 * 15 5 4 17 17 C 1.39056 * 120.15966 * 359.97438 * 16 15 5 18 18 O 1.35619 * 119.92189 * 180.02562 * 17 16 15 19 19 C 1.34760 * 116.99758 * 354.37702 * 18 17 16 20 20 H 1.08008 * 120.00105 * 5.06936 * 19 18 17 21 21 C 1.38701 * 120.00139 * 185.06246 * 19 18 17 22 22 N 1.31519 * 119.99764 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00325 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46744 * 90.00011 * 23 21 19 25 25 H 1.48495 * 109.47140 * 210.00087 * 23 21 19 26 26 H 1.48496 * 109.46837 * 330.00111 * 23 21 19 27 27 H 1.09005 * 109.47749 * 300.00536 * 1 2 3 28 28 H 1.09009 * 109.47262 * 60.00571 * 1 2 3 29 29 H 1.09003 * 109.47293 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.07640 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.00506 * 359.96404 * 6 5 4 32 32 H 1.08002 * 119.99659 * 359.97438 * 7 6 5 33 33 H 1.08998 * 109.46878 * 90.00148 * 11 10 8 34 34 H 1.09003 * 109.46902 * 210.00406 * 11 10 8 35 35 H 1.09000 * 109.46875 * 330.00087 * 11 10 8 36 36 H 1.08999 * 109.47001 * 209.99893 * 12 10 8 37 37 H 1.08999 * 109.47034 * 329.99594 * 12 10 8 38 38 H 1.08003 * 119.99766 * 180.29962 * 15 5 4 39 39 H 1.07997 * 119.92052 * 180.02562 * 16 15 5 40 40 H 0.97006 * 120.00234 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2941 2.3695 -0.0006 5 6 1.9331 3.6149 -0.0011 6 6 1.1378 4.8507 -0.0012 7 6 1.7558 6.0513 -0.0012 8 6 0.9643 7.2812 -0.0007 9 8 -0.2515 7.2225 -0.0008 10 7 1.5812 8.4795 -0.0012 11 6 3.0446 8.5500 -0.0017 12 6 0.7884 9.7115 -0.0002 13 6 0.5244 10.1239 1.3880 14 7 0.3172 10.4411 2.4614 15 6 3.3318 3.6804 -0.0016 16 6 4.0751 2.5218 -0.0021 17 6 3.4404 1.2846 -0.0015 18 8 4.1775 0.1462 -0.0015 19 6 5.5130 0.2821 -0.1196 20 1 5.9572 1.2666 -0.1263 21 6 6.3173 -0.8423 -0.2324 22 7 5.7764 -2.0411 -0.2245 23 14 8.1687 -0.6540 -0.3954 24 1 8.7868 -0.6526 0.9548 25 1 8.7134 -1.7854 -1.1880 26 1 8.4774 0.6257 -1.0825 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2155 2.3143 -0.0007 31 1 0.0590 4.7987 -0.0014 32 1 2.8346 6.1033 -0.0007 33 1 3.4071 8.5673 -1.0295 34 1 3.3648 9.4566 0.5118 35 1 3.4505 7.6787 0.5122 36 1 1.3397 10.4987 -0.5145 37 1 -0.1571 9.5355 -0.5130 38 1 3.8275 4.6399 0.0029 39 1 5.1538 2.5739 -0.0020 40 1 6.3389 -2.8275 -0.3030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263655962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:33 Heat of formation + Delta-G solvation = -36.795883 kcal Electronic energy + Delta-G solvation = -24625.883610 eV Core-core repulsion = 20793.420774 eV Total energy + Delta-G solvation = -3832.462836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33196 -40.92664 -39.30240 -38.17863 -37.73252 -36.31524 -34.63937 -33.92269 -31.31281 -30.72248 -29.52346 -27.93412 -27.48549 -27.03093 -24.58943 -23.30133 -22.08073 -19.98038 -19.86275 -19.37565 -18.86598 -18.23392 -17.74893 -17.15229 -16.84571 -16.67093 -16.30986 -15.86859 -15.63109 -15.55463 -15.26786 -15.05955 -14.98229 -14.81309 -14.10737 -13.92795 -13.74364 -13.68423 -13.52669 -13.33649 -13.29788 -13.02027 -12.82702 -12.67935 -12.54720 -12.32253 -12.14761 -12.12098 -12.00428 -11.32871 -10.98026 -10.96225 -10.50202 -9.92614 -9.46208 -8.52148 -8.45852 -6.10349 -0.31836 0.56296 1.08146 1.33416 1.38644 1.49147 1.56766 1.73127 2.18492 2.27827 2.37739 2.56510 2.87003 3.09388 3.16654 3.36869 3.59951 3.93037 4.10660 4.14925 4.30574 4.35739 4.39599 4.42113 4.42259 4.53494 4.58447 4.63813 4.71347 4.85282 4.92669 5.07461 5.08931 5.12380 5.28863 5.39506 5.51306 5.53070 5.78652 5.93462 5.99551 6.26622 6.49364 6.60517 6.96736 7.10339 7.77193 8.75915 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002706 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.952605 B =10345.612452 C =11841.930730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.036 3.964 4 C -0.134 4.134 5 C -0.134 4.134 6 C 0.015 3.985 7 C -0.242 4.242 8 C 0.552 3.448 9 O -0.582 6.582 10 N -0.610 5.610 11 C 0.065 3.935 12 C 0.210 3.790 13 C 0.214 3.786 14 N -0.488 5.488 15 C -0.063 4.063 16 C -0.218 4.218 17 C 0.101 3.899 18 O -0.213 6.213 19 C -0.414 4.414 20 H 0.112 0.888 21 C -0.023 4.023 22 N -0.915 5.915 23 Si 1.021 2.979 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.245 1.245 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.154 0.846 31 H 0.126 0.874 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.179 0.821 37 H 0.132 0.868 38 H 0.161 0.839 39 H 0.138 0.862 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 21.043 -4.195 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.009 4.009 4 C -0.153 4.153 5 C -0.135 4.135 6 C -0.005 4.005 7 C -0.263 4.263 8 C 0.345 3.655 9 O -0.464 6.464 10 N -0.343 5.343 11 C -0.077 4.077 12 C 0.084 3.916 13 C -0.104 4.104 14 N -0.167 5.167 15 C -0.081 4.081 16 C -0.237 4.237 17 C 0.049 3.951 18 O -0.118 6.118 19 C -0.490 4.490 20 H 0.129 0.871 21 C -0.221 4.221 22 N -0.552 5.552 23 Si 0.840 3.160 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.169 1.169 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.171 0.829 31 H 0.144 0.856 32 H 0.174 0.826 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.196 0.804 37 H 0.150 0.850 38 H 0.178 0.822 39 H 0.156 0.844 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.175 20.849 -2.609 21.639 hybrid contribution 0.437 -0.717 -0.138 0.851 sum -4.738 20.132 -2.746 20.863 Atomic orbital electron populations 1.23269 0.77144 1.04938 1.02062 1.86191 1.22910 1.26934 1.89905 1.18406 0.89197 0.85805 1.07501 1.21262 1.00074 0.90131 1.03837 1.18538 0.93106 0.91965 1.09933 1.22173 0.99303 0.90518 0.88502 1.22889 1.01443 0.90743 1.11201 1.18626 0.87055 0.84931 0.74880 1.90805 1.15685 1.87863 1.52040 1.47730 1.08926 1.04178 1.73446 1.22283 0.76038 1.04780 1.04552 1.19364 1.01079 0.88236 0.82886 1.30720 0.91602 0.91950 0.96164 1.81324 1.10663 1.10629 1.14059 1.21301 0.92473 0.97961 0.96337 1.21050 1.01178 0.90757 1.10718 1.19606 0.89519 0.88221 0.97762 1.83981 1.20271 1.27887 1.79657 1.22000 0.78809 0.95946 1.52226 0.87103 1.26697 1.06213 0.93546 0.95690 1.70210 1.38541 0.98858 1.47628 0.84550 0.73077 0.79246 0.79123 1.18879 1.19997 1.16861 0.91685 0.91573 0.87316 0.82854 0.85610 0.82551 0.89168 0.89002 0.90205 0.80357 0.85025 0.82203 0.84401 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.69 16 2 O -0.34 -15.03 10.28 -79.16 -0.81 -15.85 16 3 C 0.04 1.54 6.70 22.57 0.15 1.69 16 4 C -0.13 -4.45 8.77 22.65 0.20 -4.25 16 5 C -0.13 -3.98 5.87 -20.14 -0.12 -4.10 16 6 C 0.01 0.36 9.45 23.82 0.23 0.59 16 7 C -0.24 -4.76 8.61 23.62 0.20 -4.56 16 8 C 0.55 11.21 7.60 86.33 0.66 11.87 16 9 O -0.58 -16.20 15.81 -4.42 -0.07 -16.27 16 10 N -0.61 -7.24 2.83 -862.63 -2.44 -9.68 16 11 C 0.06 0.32 10.15 127.77 1.30 1.62 16 12 C 0.21 1.65 5.88 84.57 0.50 2.14 16 13 C 0.21 3.62 15.77 89.42 1.41 5.03 16 14 N -0.49 -12.10 18.55 20.03 0.37 -11.73 16 15 C -0.06 -1.89 9.40 22.56 0.21 -1.67 16 16 C -0.22 -8.59 9.14 22.33 0.20 -8.39 16 17 C 0.10 4.91 6.67 22.80 0.15 5.06 16 18 O -0.21 -12.64 9.52 -6.61 -0.06 -12.70 16 19 C -0.41 -23.18 9.48 67.93 0.64 -22.54 16 20 H 0.11 5.47 5.18 -2.91 -0.02 5.46 16 21 C -0.02 -1.28 5.49 84.85 0.47 -0.81 16 22 N -0.92 -55.61 13.67 21.62 0.30 -55.32 16 23 Si 1.02 40.94 29.55 68.60 2.03 42.97 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 26 H -0.25 -8.85 7.11 99.48 0.71 -8.15 16 27 H 0.06 1.58 7.66 -2.38 -0.02 1.56 16 28 H 0.07 1.60 7.66 -2.38 -0.02 1.58 16 29 H 0.11 2.65 8.14 -2.39 -0.02 2.64 16 30 H 0.15 4.07 6.28 -2.91 -0.02 4.05 16 31 H 0.13 3.08 7.52 -2.91 -0.02 3.06 16 32 H 0.16 2.22 4.21 -2.91 -0.01 2.21 16 33 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.09 0.16 8.07 -2.39 -0.02 0.15 16 35 H 0.08 0.48 6.09 -2.39 -0.01 0.46 16 36 H 0.18 -0.47 8.07 -2.39 -0.02 -0.49 16 37 H 0.13 1.10 7.42 -2.39 -0.02 1.08 16 38 H 0.16 3.30 6.15 -2.91 -0.02 3.28 16 39 H 0.14 5.31 5.62 -2.91 -0.02 5.30 16 40 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -85.68 354.86 7.72 -77.96 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.10 Total: 17.25 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 7.31 Total: -16.64 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -1.78 Total: -76.73 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.95 Total: -44.82 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -85.68 7.72 -77.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263655962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.167 kcal (2) G-P(sol) polarization free energy of solvation -85.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds