Wall clock time and date at job start Tue Mar 31 2020 11:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47381 * 2 1 4 4 C 1.46507 * 120.00026 * 274.96519 * 3 2 1 5 5 C 1.50701 * 109.47195 * 270.00007 * 4 3 2 6 6 H 1.08002 * 119.99838 * 0.02562 * 5 4 3 7 7 C 1.37866 * 120.00114 * 180.02562 * 5 4 3 8 8 N 1.31522 * 120.00221 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00378 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47136 * 89.99605 * 9 7 5 11 11 H 1.48495 * 109.47369 * 210.00039 * 9 7 5 12 12 H 1.48502 * 109.46973 * 330.00491 * 9 7 5 13 13 C 1.34772 * 120.00034 * 94.96785 * 3 2 1 14 14 O 1.21632 * 119.99937 * 185.55020 * 13 3 2 15 15 C 1.47260 * 119.99870 * 5.54565 * 13 3 2 16 16 C 1.40285 * 120.46764 * 55.01447 * 15 13 3 17 17 C 1.36853 * 118.59298 * 180.02562 * 16 15 13 18 18 C 1.39858 * 119.48101 * 0.02562 * 17 16 15 19 19 C 1.47401 * 119.53949 * 180.02562 * 18 17 16 20 20 C 1.36203 * 125.95277 * 179.71748 * 19 18 17 21 21 C 1.40692 * 106.72558 * 180.25912 * 20 19 18 22 22 C 1.34902 * 107.06888 * 359.97438 * 21 20 19 23 23 O 1.34163 * 108.70456 * 0.02562 * 22 21 20 24 24 N 1.33030 * 120.91713 * 0.26985 * 18 17 16 25 25 C 1.32042 * 121.52113 * 359.43930 * 24 18 17 26 26 O 1.35425 * 119.79104 * 180.25868 * 25 24 18 27 27 H 1.08995 * 109.47472 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46785 * 300.00500 * 1 2 3 29 29 H 1.08998 * 109.46582 * 59.99994 * 1 2 3 30 30 H 1.09008 * 109.47157 * 240.00117 * 2 1 3 31 31 H 1.09001 * 109.47038 * 120.00214 * 2 1 3 32 32 H 1.09000 * 109.47072 * 30.00266 * 4 3 2 33 33 H 1.08993 * 109.47061 * 149.99979 * 4 3 2 34 34 H 0.96991 * 120.00229 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.70323 * 0.02562 * 16 15 13 36 36 H 1.07998 * 120.26093 * 180.02562 * 17 16 15 37 37 H 1.07999 * 126.63471 * 0.22194 * 20 19 18 38 38 H 1.08008 * 126.46486 * 180.02562 * 21 20 19 39 39 H 1.07992 * 125.64894 * 179.97438 * 22 21 20 40 40 H 0.96706 * 114.00497 * 270.29647 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1591 2.1084 -1.2640 5 6 3.5418 1.8859 -1.8204 6 1 4.2453 1.2645 -1.2861 7 6 3.9088 2.4755 -3.0114 8 7 3.0523 3.2326 -3.6618 9 14 5.6230 2.2003 -3.7008 10 1 5.6163 1.0044 -4.5813 11 1 6.0379 3.3906 -4.4856 12 1 6.5775 1.9867 -2.5833 13 6 2.3383 1.9828 1.1628 14 8 2.6469 3.1593 1.1740 15 6 2.3142 1.2158 2.4196 16 6 3.0558 0.0316 2.5446 17 6 3.0051 -0.6510 3.7297 18 6 2.2216 -0.1550 4.7767 19 6 2.1665 -0.8888 6.0538 20 6 1.4542 -0.5236 7.1558 21 6 1.6961 -1.5026 8.1370 22 6 2.5345 -2.4091 7.5937 23 8 2.8163 -2.0351 6.3364 24 7 1.5216 0.9672 4.6342 25 6 1.5472 1.6588 3.5097 26 8 0.8249 2.7996 3.4047 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.4180 1.7456 -1.9763 33 1 2.0046 3.1732 -1.0897 34 1 3.3103 3.6470 -4.4998 35 1 3.6541 -0.3337 1.7230 36 1 3.5657 -1.5654 3.8555 37 1 0.8259 0.3489 7.2571 38 1 1.2870 -1.5246 9.1363 39 1 2.9163 -3.2895 8.0890 40 1 -0.0753 2.6665 3.0775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267369298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:36 Heat of formation + Delta-G solvation = -38.041440 kcal Electronic energy + Delta-G solvation = -25860.656064 eV Core-core repulsion = 22028.139216 eV Total energy + Delta-G solvation = -3832.516848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.54224 -42.00667 -40.16670 -38.38073 -37.01537 -35.06798 -34.36186 -33.64995 -32.52634 -31.65379 -30.13270 -28.82362 -26.07144 -25.16948 -24.41317 -24.00573 -22.42827 -21.92462 -20.75143 -19.91019 -18.78252 -18.62254 -18.24424 -17.85880 -17.49734 -17.11086 -16.77523 -16.32870 -15.96221 -15.81083 -15.02999 -14.95887 -14.61522 -14.37820 -14.29178 -14.14582 -13.86482 -13.64247 -13.53296 -13.37308 -13.27926 -13.13333 -12.92675 -12.70876 -12.53868 -12.20965 -12.04409 -11.73262 -11.29854 -11.10143 -10.93318 -10.64216 -10.61492 -10.47532 -9.53416 -9.09748 -8.22864 -6.37874 -0.82470 -0.06799 0.81469 1.37477 1.40845 1.50559 1.51428 1.59320 1.78132 2.16380 2.39734 2.46382 2.65823 3.07352 3.31558 3.41978 3.58956 3.85529 3.99227 4.07225 4.07608 4.25766 4.30198 4.35195 4.52651 4.57873 4.79801 4.86642 4.90904 4.92139 4.99611 5.02085 5.08351 5.18491 5.25203 5.31462 5.52364 5.54454 5.80582 6.02534 6.04051 6.36818 6.59114 6.62926 6.71738 7.21145 7.37079 8.84620 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.021603 B = 0.003148 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.791542 B = 8893.530677 C = 9293.869185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 N -0.589 5.589 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.058 0.942 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.554 3.446 14 O -0.580 6.580 15 C -0.195 4.195 16 C -0.021 4.021 17 C -0.153 4.153 18 C 0.236 3.764 19 C -0.020 4.020 20 C -0.150 4.150 21 C -0.233 4.233 22 C 0.000 4.000 23 O -0.172 6.172 24 N -0.503 5.503 25 C 0.357 3.643 26 O -0.481 6.481 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.028 0.972 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.166 0.834 36 H 0.181 0.819 37 H 0.152 0.848 38 H 0.178 0.822 39 H 0.254 0.746 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 -17.814 20.764 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.030 4.030 3 N -0.319 5.319 4 C 0.141 3.859 5 C -0.583 4.583 6 H 0.076 0.924 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.341 3.659 14 O -0.460 6.460 15 C -0.202 4.202 16 C -0.046 4.046 17 C -0.172 4.172 18 C 0.099 3.901 19 C -0.070 4.070 20 C -0.171 4.171 21 C -0.252 4.252 22 C -0.068 4.068 23 O -0.067 6.067 24 N -0.223 5.223 25 C 0.177 3.823 26 O -0.290 6.290 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.183 0.817 36 H 0.198 0.802 37 H 0.169 0.831 38 H 0.195 0.805 39 H 0.270 0.730 40 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -4.070 -16.611 21.183 27.225 hybrid contribution 0.497 0.467 -1.475 1.625 sum -3.573 -16.144 19.708 25.726 Atomic orbital electron populations 1.22114 0.94730 1.03493 1.01445 1.21954 0.95480 0.81433 1.04159 1.48176 1.62436 1.15155 1.06139 1.18786 0.96160 0.91169 0.79787 1.21713 0.99312 1.30876 1.06440 0.92364 1.25861 1.01773 0.94364 0.97088 1.70055 1.37185 1.32709 1.16836 0.85402 0.78919 0.78118 0.78303 1.18640 1.20919 1.19595 1.18228 0.77581 0.86202 0.83897 1.90778 1.50019 1.18079 1.87126 1.21078 1.05724 0.98554 0.94863 1.21536 0.94112 0.90058 0.98910 1.21985 1.00411 1.03070 0.91783 1.18328 0.91996 0.88972 0.90835 1.19499 1.02726 0.89921 0.94834 1.22207 1.00875 1.01506 0.92491 1.22201 1.04302 0.96168 1.02501 1.25239 0.98910 1.01707 0.80978 1.84016 1.57127 1.33966 1.31640 1.66959 1.23696 1.06985 1.24710 1.18774 0.92102 0.85023 0.86410 1.84768 1.30966 1.25349 1.87944 0.88581 0.93157 0.93655 0.89924 0.88427 0.95402 0.98334 0.92388 0.81655 0.80157 0.83050 0.80459 0.72985 0.72110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.09 2.79 5.97 86.38 0.52 3.31 16 3 N -0.59 -25.06 2.46 -830.20 -2.04 -27.10 16 4 C 0.26 14.07 5.23 85.63 0.45 14.52 16 5 C -0.54 -30.99 9.39 25.60 0.24 -30.75 16 6 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -56.00 13.29 21.44 0.28 -55.71 16 9 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 10 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 13 C 0.55 24.43 6.79 86.62 0.59 25.02 16 14 O -0.58 -32.12 16.36 -2.17 -0.04 -32.16 16 15 C -0.20 -6.63 4.92 -19.87 -0.10 -6.73 16 16 C -0.02 -0.54 7.55 22.44 0.17 -0.37 16 17 C -0.15 -3.29 9.68 22.34 0.22 -3.07 16 18 C 0.24 5.91 6.74 41.77 0.28 6.19 16 19 C -0.02 -0.43 7.03 24.21 0.17 -0.26 16 20 C -0.15 -2.95 10.58 22.40 0.24 -2.71 16 21 C -0.23 -3.00 10.88 22.10 0.24 -2.76 16 22 C 0.00 0.00 12.08 67.05 0.81 0.81 16 23 O -0.17 -2.93 10.36 -5.70 -0.06 -2.99 16 24 N -0.50 -14.84 10.05 -297.43 -2.99 -17.83 16 25 C 0.36 11.68 7.76 85.20 0.66 12.34 16 26 O -0.48 -15.94 12.79 -85.25 -1.09 -17.03 16 27 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 2.55 8.11 -2.38 -0.02 2.53 16 31 H 0.10 2.41 4.42 -2.39 -0.01 2.40 16 32 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 33 H 0.00 -0.09 7.35 -2.39 -0.02 -0.11 16 34 H 0.27 15.12 8.31 -92.72 -0.77 14.35 16 35 H 0.17 3.79 7.61 -2.91 -0.02 3.77 16 36 H 0.18 2.64 7.87 -2.91 -0.02 2.62 16 37 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.25 0.01 8.06 -2.91 -0.02 -0.01 16 40 H 0.42 9.55 9.06 -74.05 -0.67 8.88 16 Total: -1.00 -81.85 353.64 2.19 -79.66 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.42 Total: 13.61 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 5.68 Total: 13.11 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -4.74 Total: -100.64 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -1.18 Total: -52.17 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -81.85 2.19 -79.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267369298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.616 kcal (2) G-P(sol) polarization free energy of solvation -81.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds