Wall clock time and date at job start Tue Mar 31 2020 11:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00102 * 2 1 4 4 N 1.46503 * 109.46871 * 124.99718 * 3 2 1 5 5 C 1.46502 * 120.00336 * 274.97162 * 4 3 2 6 6 C 1.50705 * 109.46690 * 270.00001 * 5 4 3 7 7 H 1.07995 * 120.00164 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99691 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99980 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99918 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47298 * 59.99784 * 10 8 6 12 12 H 1.48498 * 109.47275 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47228 * 299.99728 * 10 8 6 14 14 C 1.34781 * 119.99872 * 94.96809 * 4 3 2 15 15 O 1.21583 * 120.00035 * 185.55838 * 14 4 3 16 16 C 1.47587 * 119.99849 * 5.55931 * 14 4 3 17 17 C 1.39674 * 120.20515 * 55.01010 * 16 14 4 18 18 C 1.37933 * 120.14231 * 179.97438 * 17 16 14 19 19 C 1.38403 * 120.38717 * 359.97438 * 18 17 16 20 20 C 1.38550 * 120.16062 * 0.02562 * 19 18 17 21 21 C 1.39421 * 120.12193 * 0.02562 * 20 19 18 22 22 O 1.35307 * 107.35805 * 179.97438 * 21 20 19 23 23 C 1.34272 * 109.20022 * 0.02562 * 22 21 20 24 24 O 1.21592 * 125.28545 * 180.02562 * 23 22 21 25 25 N 1.34777 * 109.42107 * 359.97438 * 23 22 21 26 26 C 1.46506 * 126.27270 * 179.97438 * 25 23 22 27 27 H 1.07996 * 120.00411 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99819 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00254 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47029 * 5.00142 * 3 2 1 31 31 H 1.09000 * 109.47098 * 244.99383 * 3 2 1 32 32 H 1.09003 * 109.47025 * 29.99794 * 5 4 3 33 33 H 1.08997 * 109.47181 * 150.00391 * 5 4 3 34 34 H 0.97000 * 120.00322 * 180.02562 * 9 8 6 35 35 H 1.07995 * 119.93293 * 359.97438 * 17 16 14 36 36 H 1.08007 * 119.80675 * 179.69941 * 18 17 16 37 37 H 1.08007 * 119.92002 * 179.97438 * 19 18 17 38 38 H 1.09009 * 109.46717 * 0.02562 * 26 25 23 39 39 H 1.08996 * 109.47419 * 120.02389 * 26 25 23 40 40 H 1.08999 * 109.47213 * 240.03453 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5286 1.7627 2.4522 6 6 2.7148 3.2519 2.5892 7 1 3.1369 3.8205 1.7738 8 6 2.3452 3.8885 3.7550 9 7 1.8298 3.1962 4.7473 10 14 2.5752 5.7345 3.9245 11 1 1.7915 6.4298 2.8721 12 1 2.1028 6.1714 5.2628 13 1 4.0139 6.0700 3.7732 14 6 4.2775 0.9600 0.9574 15 8 5.0238 0.8850 1.9143 16 6 4.7773 0.6440 -0.3948 17 6 4.6464 1.5749 -1.4278 18 6 5.1144 1.2784 -2.6909 19 6 5.7171 0.0588 -2.9458 20 6 5.8545 -0.8752 -1.9317 21 6 5.3854 -0.5905 -0.6500 22 8 5.6492 -1.6678 0.1250 23 6 6.2600 -2.6061 -0.6163 24 8 6.6268 -3.6924 -0.2114 25 7 6.4023 -2.1571 -1.8791 26 6 7.0201 -2.8820 -2.9923 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6214 1.4025 -0.9313 32 1 1.4725 1.5167 2.5635 33 1 3.1040 1.2521 3.2244 34 1 1.5694 3.6441 5.5673 35 1 4.1776 2.5290 -1.2371 36 1 5.0059 2.0004 -3.4869 37 1 6.0806 -0.1657 -3.9378 38 1 7.3563 -3.8598 -2.6471 39 1 6.2906 -3.0101 -3.7919 40 1 7.8732 -2.3157 -3.3659 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293683286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:01 Heat of formation + Delta-G solvation = -36.645588 kcal Electronic energy + Delta-G solvation = -26417.088699 eV Core-core repulsion = 22584.632380 eV Total energy + Delta-G solvation = -3832.456319 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.49449 -41.14101 -39.46263 -38.66124 -37.33133 -36.99397 -35.11042 -33.76566 -32.27728 -31.02656 -29.49931 -28.83569 -27.04666 -25.81670 -24.39964 -24.03495 -23.10006 -21.28473 -20.43798 -19.90547 -18.76650 -18.68952 -18.60979 -17.98150 -17.48652 -17.06861 -16.37941 -16.23517 -16.18592 -15.85110 -15.55554 -15.18796 -14.99868 -14.67505 -14.49403 -14.24535 -14.14405 -13.50908 -13.42387 -13.40794 -13.20012 -12.97171 -12.85375 -12.81261 -12.56953 -12.30302 -12.24872 -12.20748 -11.72782 -11.65274 -10.87797 -10.63779 -10.37080 -9.92466 -9.56078 -9.28726 -8.21684 -6.37630 -0.34025 0.01270 0.94450 1.12511 1.24967 1.39259 1.44521 1.51426 1.59364 1.76857 2.20941 2.40067 2.49378 3.08425 3.15249 3.45828 3.65729 3.87194 4.02837 4.07890 4.12051 4.21026 4.35116 4.39604 4.47195 4.64057 4.72833 4.78002 4.80286 4.95700 5.01114 5.09145 5.18722 5.20043 5.24186 5.46405 5.51308 5.67604 5.72410 5.89391 5.97549 6.03166 6.37762 6.57008 6.71431 7.17448 7.35685 8.86309 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.003808 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.889435 B = 7352.117854 C = 7425.311012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.190 4.190 3 C 0.125 3.875 4 N -0.585 5.585 5 C 0.263 3.737 6 C -0.544 4.544 7 H 0.065 0.935 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.973 3.027 11 H -0.253 1.253 12 H -0.283 1.283 13 H -0.276 1.276 14 C 0.539 3.461 15 O -0.592 6.592 16 C -0.098 4.098 17 C -0.078 4.078 18 C -0.072 4.072 19 C -0.058 4.058 20 C 0.067 3.933 21 C 0.033 3.967 22 O -0.266 6.266 23 C 0.620 3.380 24 O -0.528 6.528 25 N -0.533 5.533 26 C 0.088 3.912 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.025 0.975 33 H -0.010 1.010 34 H 0.267 0.733 35 H 0.161 0.839 36 H 0.202 0.798 37 H 0.193 0.807 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 -4.331 -27.653 28.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.209 4.209 3 C 0.004 3.996 4 N -0.313 5.313 5 C 0.142 3.858 6 C -0.582 4.582 7 H 0.083 0.917 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.796 3.204 11 H -0.177 1.177 12 H -0.208 1.208 13 H -0.202 1.202 14 C 0.327 3.673 15 O -0.473 6.473 16 C -0.102 4.102 17 C -0.097 4.097 18 C -0.090 4.090 19 C -0.078 4.078 20 C -0.030 4.030 21 C -0.014 4.014 22 O -0.171 6.171 23 C 0.376 3.624 24 O -0.415 6.415 25 N -0.266 5.266 26 C -0.049 4.049 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.043 0.957 33 H 0.008 0.992 34 H 0.076 0.924 35 H 0.178 0.822 36 H 0.219 0.781 37 H 0.211 0.789 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.360 -5.074 -26.546 27.376 hybrid contribution 0.096 0.128 1.777 1.784 sum 4.456 -4.946 -24.769 25.648 Atomic orbital electron populations 1.24050 0.95124 1.03136 0.97546 1.23242 0.97004 0.98076 1.02628 1.21130 0.92762 0.96196 0.89488 1.48144 1.08551 1.62548 1.12096 1.18772 0.93616 0.94303 0.79112 1.21675 1.42186 0.93038 1.01316 0.91665 1.25943 0.94382 1.04056 0.94918 1.70076 1.42983 1.38237 1.05775 0.85393 0.78607 0.78504 0.77868 1.17677 1.20818 1.20181 1.18836 0.82535 0.76972 0.88913 1.90757 1.57651 1.54947 1.43979 1.18957 1.03963 0.92601 0.94724 1.21485 0.98601 0.98116 0.91459 1.21551 0.94646 0.96538 0.96244 1.20870 0.98264 0.90367 0.98279 1.18721 1.01588 0.87937 0.94791 1.19083 1.04445 0.88759 0.89153 1.84994 1.67574 1.25285 1.39296 1.18855 0.79208 0.83615 0.80755 1.91073 1.55890 1.18565 1.75924 1.45847 1.55502 1.14679 1.10551 1.22316 0.99925 0.97251 0.85435 0.86967 0.87208 0.89067 0.89113 0.86376 0.95747 0.99221 0.92434 0.82181 0.78103 0.78941 0.89300 0.86962 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 14.32 67.78 0.97 -3.13 16 2 C -0.19 -5.72 9.84 25.65 0.25 -5.47 16 3 C 0.13 4.00 5.67 85.63 0.49 4.48 16 4 N -0.58 -26.15 2.44 -834.18 -2.04 -28.19 16 5 C 0.26 14.74 5.22 85.63 0.45 15.19 16 6 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 7 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 8 C 0.01 0.34 5.46 84.66 0.46 0.80 16 9 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 10 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 11 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.54 25.03 7.13 86.71 0.62 25.65 16 15 O -0.59 -34.69 16.64 -3.98 -0.07 -34.75 16 16 C -0.10 -3.25 4.91 -20.05 -0.10 -3.35 16 17 C -0.08 -1.59 7.47 22.54 0.17 -1.42 16 18 C -0.07 -0.69 10.02 22.24 0.22 -0.47 16 19 C -0.06 -0.57 10.02 22.38 0.22 -0.35 16 20 C 0.07 1.42 6.84 38.28 0.26 1.68 16 21 C 0.03 1.07 7.08 22.97 0.16 1.23 16 22 O -0.27 -10.73 10.71 10.82 0.12 -10.61 16 23 C 0.62 21.13 9.07 129.79 1.18 22.30 16 24 O -0.53 -20.58 17.57 19.21 0.34 -20.24 16 25 N -0.53 -11.72 3.21 -784.49 -2.52 -14.24 16 26 C 0.09 0.86 11.21 127.77 1.43 2.30 16 27 H 0.11 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.11 2.59 7.84 -2.91 -0.02 2.57 16 29 H 0.09 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.09 2.84 7.76 -2.39 -0.02 2.82 16 31 H 0.12 2.84 4.42 -2.39 -0.01 2.83 16 32 H 0.02 1.39 8.07 -2.39 -0.02 1.38 16 33 H -0.01 -0.69 7.35 -2.39 -0.02 -0.71 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.16 2.96 7.57 -2.91 -0.02 2.94 16 36 H 0.20 -0.06 8.06 -2.91 -0.02 -0.08 16 37 H 0.19 -0.04 8.06 -2.91 -0.02 -0.07 16 38 H 0.09 1.07 7.72 -2.38 -0.02 1.05 16 39 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -92.96 353.73 6.24 -86.72 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 1.07 Total: 3.51 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: 7.03 Total: 28.51 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -4.27 Total: -99.43 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: 0.39 Total: -65.60 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -92.96 6.24 -86.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293683286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.074 kcal (2) G-P(sol) polarization free energy of solvation -92.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds