Wall clock time and date at job start Tue Mar 31 2020 11:04:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 N 1.46497 * 109.47668 * 42.00916 * 3 2 1
5 5 C 1.46504 * 119.99724 * 262.03342 * 4 3 2
6 6 C 1.53004 * 109.46838 * 274.29800 * 5 4 3
7 7 C 1.34773 * 120.00490 * 82.02220 * 4 3 2
8 8 O 1.21358 * 120.00037 * 181.44132 * 7 4 3
9 9 C 1.49356 * 119.99698 * 1.44323 * 7 4 3
10 10 O 1.21369 * 120.00092 * 1.71415 * 9 7 4
11 11 N 1.34775 * 119.99659 * 181.71299 * 9 7 4
12 12 C 1.39730 * 119.99992 * 176.63677 * 11 9 7
13 13 C 1.39019 * 120.03856 * 36.29291 * 12 11 9
14 14 C 1.38141 * 120.06155 * 180.02562 * 13 12 11
15 15 C 1.38183 * 120.14352 * 359.71902 * 14 13 12
16 16 C 1.38918 * 120.08005 * 0.55537 * 15 14 13
17 17 O 1.35742 * 120.03074 * 179.71667 * 16 15 14
18 18 C 1.34837 * 117.00078 * 173.62126 * 17 16 15
19 19 H 1.07995 * 120.00124 * 5.21407 * 18 17 16
20 20 C 1.38653 * 119.99871 * 185.21081 * 18 17 16
21 21 N 1.31559 * 120.00304 * 0.02562 * 20 18 17
22 22 Si 1.86802 * 119.99625 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47530 * 0.02562 * 22 20 18
24 24 H 1.48503 * 109.47274 * 120.00174 * 22 20 18
25 25 H 1.48506 * 109.47002 * 239.99860 * 22 20 18
26 26 C 1.38765 * 119.93912 * 359.44797 * 16 15 14
27 27 H 4.40641 * 5.51320 * 180.02562 * 4 1 2
28 28 H 1.09001 * 109.47256 * 282.00312 * 3 2 1
29 29 H 1.09009 * 109.47137 * 162.00507 * 3 2 1
30 30 H 1.09007 * 109.46956 * 34.29213 * 5 4 3
31 31 H 1.08996 * 109.47306 * 154.29482 * 5 4 3
32 32 H 1.08994 * 109.47204 * 180.02562 * 6 5 4
33 33 H 1.09006 * 109.46815 * 300.00019 * 6 5 4
34 34 H 1.08996 * 109.47432 * 59.99759 * 6 5 4
35 35 H 0.97002 * 120.00236 * 356.63601 * 11 9 7
36 36 H 1.08002 * 119.97177 * 359.97438 * 13 12 11
37 37 H 1.07997 * 119.92723 * 180.02562 * 14 13 12
38 38 H 1.07991 * 119.95919 * 180.27605 * 15 14 13
39 39 H 0.96995 * 119.99864 * 180.02562 * 21 20 18
40 40 H 1.07999 * 120.07429 * 180.25026 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1349 -1.0254 -0.9243
5 6 3.5455 -2.3357 -0.4136
6 6 5.0071 -2.2732 0.0345
7 6 3.2068 -0.7641 -2.2445
8 8 3.5870 -1.6227 -3.0132
9 6 2.8185 0.5823 -2.7615
10 8 2.4680 1.4508 -1.9895
11 7 2.8574 0.8328 -4.0852
12 6 2.4275 2.0687 -4.5753
13 6 2.6698 3.2282 -3.8478
14 6 2.2445 4.4503 -4.3316
15 6 1.5826 4.5250 -5.5423
16 6 1.3323 3.3694 -6.2715
17 8 0.6769 3.4433 -7.4579
18 6 0.5827 2.3066 -8.1770
19 1 0.9435 1.3756 -7.7654
20 6 0.0225 2.3330 -9.4451
21 7 -0.4166 3.4671 -9.9469
22 14 -0.1086 0.7581 -10.4411
23 1 0.4524 -0.3716 -9.6573
24 1 -1.5353 0.4851 -10.7501
25 1 0.6521 0.9085 -11.7076
26 6 1.7579 2.1400 -5.7886
27 1 -1.0498 -0.0001 -0.0003
28 1 3.0094 -0.2129 1.0052
29 1 3.0089 0.9783 -0.3175
30 1 2.9169 -2.6084 0.4343
31 1 3.4382 -3.0823 -1.2004
32 1 5.3128 -3.2481 0.4141
33 1 5.6356 -2.0004 -0.8133
34 1 5.1144 -1.5266 0.8213
35 1 3.1838 0.1551 -4.6977
36 1 3.1902 3.1736 -2.9030
37 1 2.4342 5.3498 -3.7648
38 1 1.2554 5.4824 -5.9198
39 1 -0.8088 3.4854 -10.8338
40 1 1.5681 1.2407 -6.3557
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000299187851.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:04:40
Heat of formation + Delta-G solvation = 10.641526 kcal
Electronic energy + Delta-G solvation = -25487.104691 eV
Core-core repulsion = 21656.698895 eV
Total energy + Delta-G solvation = -3830.405796 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.126 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.16707 -39.46897 -38.44331 -37.01726 -36.34013 -34.28922 -33.32598 -32.26750
-31.16109 -29.56096 -28.74150 -27.37442 -25.71402 -25.18336 -23.06310 -21.89261
-21.12612 -20.06230 -19.00988 -18.07376 -17.74842 -17.29867 -16.92810 -16.32224
-15.71012 -15.45140 -15.16664 -14.79256 -14.56950 -14.21860 -14.10529 -13.89557
-13.72669 -13.59102 -13.48659 -13.03897 -12.93936 -12.44961 -12.40643 -11.81465
-11.70275 -11.54052 -11.45805 -11.10412 -11.00376 -10.83189 -10.58862 -10.44590
-10.35888 -9.83789 -9.55668 -9.40712 -9.18377 -8.84390 -7.84867 -7.24540
-6.47624 -4.07578 1.16627 1.94738 2.10979 2.33271 2.72608 2.79053
3.10037 3.12842 3.15136 3.18324 3.54419 3.94596 4.20410 4.31571
4.53050 4.65772 4.80330 4.89245 5.06087 5.07393 5.23475 5.35131
5.40009 5.53485 5.62841 5.80625 5.83912 5.91113 5.97565 6.02755
6.14624 6.18805 6.53403 6.65947 6.84496 6.86893 7.05621 7.22231
7.34140 7.38063 7.53680 7.62244 7.70463 7.95679 8.01174 8.97917
9.66404 10.70221
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.015857 B = 0.003229 C = 0.002950
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1765.383657 B = 8669.314641 C = 9488.533253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.200 4.200
3 C 0.204 3.796
4 N -0.584 5.584
5 C 0.105 3.895
6 C -0.168 4.168
7 C 0.513 3.487
8 O -0.514 6.514
9 C 0.503 3.497
10 O -0.493 6.493
11 N -0.635 5.635
12 C 0.171 3.829
13 C -0.201 4.201
14 C -0.065 4.065
15 C -0.194 4.194
16 C 0.167 3.833
17 O -0.174 6.174
18 C -0.393 4.393
19 H 0.092 0.908
20 C 0.040 3.960
21 N -0.861 5.861
22 Si 0.940 3.060
23 H -0.267 1.267
24 H -0.276 1.276
25 H -0.275 1.275
26 C -0.249 4.249
27 H 0.216 0.784
28 H 0.098 0.902
29 H 0.139 0.861
30 H 0.082 0.918
31 H 0.091 0.909
32 H 0.070 0.930
33 H 0.061 0.939
34 H 0.059 0.941
35 H 0.418 0.582
36 H 0.122 0.878
37 H 0.118 0.882
38 H 0.120 0.880
39 H 0.270 0.730
40 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.739 -8.965 19.380 22.712
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.201 4.201
3 C 0.083 3.917
4 N -0.317 5.317
5 C -0.016 4.016
6 C -0.226 4.226
7 C 0.296 3.704
8 O -0.389 6.389
9 C 0.285 3.715
10 O -0.368 6.368
11 N -0.280 5.280
12 C 0.078 3.922
13 C -0.221 4.221
14 C -0.084 4.084
15 C -0.213 4.213
16 C 0.113 3.887
17 O -0.078 6.078
18 C -0.469 4.469
19 H 0.109 0.891
20 C -0.164 4.164
21 N -0.496 5.496
22 Si 0.765 3.235
23 H -0.191 1.191
24 H -0.201 1.201
25 H -0.201 1.201
26 C -0.270 4.270
27 H 0.233 0.767
28 H 0.116 0.884
29 H 0.156 0.844
30 H 0.100 0.900
31 H 0.109 0.891
32 H 0.089 0.911
33 H 0.080 0.920
34 H 0.078 0.922
35 H 0.255 0.745
36 H 0.140 0.860
37 H 0.136 0.864
38 H 0.138 0.862
39 H 0.080 0.920
40 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 7.500 -8.607 19.191 22.330
hybrid contribution -0.270 -1.245 -0.768 1.488
sum 7.230 -9.852 18.424 22.108
Atomic orbital electron populations
1.24939 0.95969 0.99810 0.99530 1.23250 0.94648 1.00964 1.01251
1.19040 0.84411 0.94363 0.93838 1.47836 1.62599 1.15390 1.05898
1.21638 0.95876 0.83928 1.00185 1.22145 0.95988 1.02527 1.01941
1.20171 0.78866 0.88418 0.82948 1.90768 1.45232 1.47207 1.55682
1.20007 0.79603 0.88415 0.83455 1.90677 1.44637 1.46635 1.54817
1.43130 1.61342 1.16470 1.07086 1.17395 0.97202 0.83337 0.94248
1.20607 1.08560 0.90926 1.02035 1.20541 0.96695 0.96646 0.94469
1.20312 1.07307 0.96905 0.96824 1.19056 0.89985 0.92261 0.87428
1.84007 1.62769 1.35695 1.25292 1.21346 1.42218 0.85854 0.97516
0.89096 1.25282 0.96235 0.98856 0.96031 1.70044 1.37178 1.25279
1.17093 0.85661 0.78431 0.79965 0.79467 1.19084 1.20121 1.20069
1.20865 1.08244 0.99241 0.98656 0.76724 0.88406 0.84405 0.89995
0.89101 0.91127 0.92002 0.92191 0.74488 0.85985 0.86429 0.86225
0.92015 0.85042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.12 19.25 29.55 0.57 -1.55 16
2 C -0.20 -2.39 12.48 -37.12 -0.46 -2.86 16
3 C 0.20 2.01 5.56 -6.83 -0.04 1.97 16
4 N -0.58 -6.26 2.46 -177.56 -0.44 -6.69 16
5 C 0.11 0.86 6.15 -4.04 -0.02 0.83 16
6 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16
7 C 0.51 6.98 7.65 -11.63 -0.09 6.89 16
8 O -0.51 -7.81 15.98 5.49 0.09 -7.72 16
9 C 0.50 7.66 7.56 -11.63 -0.09 7.57 16
10 O -0.49 -7.88 9.88 5.48 0.05 -7.82 16
11 N -0.63 -10.24 5.32 -10.31 -0.05 -10.29 16
12 C 0.17 3.24 6.26 -83.77 -0.52 2.71 16
13 C -0.20 -3.67 8.68 -39.33 -0.34 -4.01 16
14 C -0.06 -1.17 10.03 -39.64 -0.40 -1.56 16
15 C -0.19 -4.05 9.99 -39.35 -0.39 -4.44 16
16 C 0.17 3.99 6.64 -39.13 -0.26 3.73 16
17 O -0.17 -4.91 9.76 0.05 0.00 -4.91 16
18 C -0.39 -10.87 9.49 30.89 0.29 -10.58 16
19 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16
20 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16
21 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16
22 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16
23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16
24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16
25 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16
26 C -0.25 -5.37 9.08 -39.19 -0.36 -5.73 16
27 H 0.22 1.83 7.80 -54.10 -0.42 1.41 16
28 H 0.10 0.64 8.01 -51.93 -0.42 0.22 16
29 H 0.14 1.51 5.43 -51.92 -0.28 1.22 16
30 H 0.08 0.51 8.10 -51.92 -0.42 0.09 16
31 H 0.09 0.84 7.28 -51.93 -0.38 0.47 16
32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
35 H 0.42 6.10 8.29 -40.82 -0.34 5.77 16
36 H 0.12 2.09 6.35 -52.49 -0.33 1.76 16
37 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16
38 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16
39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16
40 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16
LS Contribution 353.47 15.07 5.33 5.33
Total: -1.00 -32.72 353.47 -5.53 -38.24
By element:
Atomic # 1 Polarization: 13.89 SS G_CDS: -4.41 Total: 9.48 kcal
Atomic # 6 Polarization: -4.90 SS G_CDS: -1.83 Total: -6.73 kcal
Atomic # 7 Polarization: -41.56 SS G_CDS: 0.27 Total: -41.29 kcal
Atomic # 8 Polarization: -20.60 SS G_CDS: 0.14 Total: -20.45 kcal
Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -32.72 -5.53 -38.24 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299187851.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.885 kcal
(2) G-P(sol) polarization free energy of solvation -32.717 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.642 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds