Wall clock time and date at job start Tue Mar 31 2020 11:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47668 * 42.00916 * 3 2 1 5 5 C 1.46504 * 119.99724 * 262.03342 * 4 3 2 6 6 C 1.53004 * 109.46838 * 274.29800 * 5 4 3 7 7 C 1.34773 * 120.00490 * 82.02220 * 4 3 2 8 8 O 1.21358 * 120.00037 * 181.44132 * 7 4 3 9 9 C 1.49356 * 119.99698 * 1.44323 * 7 4 3 10 10 O 1.21369 * 120.00092 * 1.71415 * 9 7 4 11 11 N 1.34775 * 119.99659 * 181.71299 * 9 7 4 12 12 C 1.39730 * 119.99992 * 176.63677 * 11 9 7 13 13 C 1.39019 * 120.03856 * 36.29291 * 12 11 9 14 14 C 1.38141 * 120.06155 * 180.02562 * 13 12 11 15 15 C 1.38183 * 120.14352 * 359.71902 * 14 13 12 16 16 C 1.38918 * 120.08005 * 0.55537 * 15 14 13 17 17 O 1.35742 * 120.03074 * 179.71667 * 16 15 14 18 18 C 1.34837 * 117.00078 * 173.62126 * 17 16 15 19 19 H 1.07995 * 120.00124 * 5.21407 * 18 17 16 20 20 C 1.38653 * 119.99871 * 185.21081 * 18 17 16 21 21 N 1.31559 * 120.00304 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99625 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47530 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47274 * 120.00174 * 22 20 18 25 25 H 1.48506 * 109.47002 * 239.99860 * 22 20 18 26 26 C 1.38765 * 119.93912 * 359.44797 * 16 15 14 27 27 H 4.40641 * 5.51320 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47256 * 282.00312 * 3 2 1 29 29 H 1.09009 * 109.47137 * 162.00507 * 3 2 1 30 30 H 1.09007 * 109.46956 * 34.29213 * 5 4 3 31 31 H 1.08996 * 109.47306 * 154.29482 * 5 4 3 32 32 H 1.08994 * 109.47204 * 180.02562 * 6 5 4 33 33 H 1.09006 * 109.46815 * 300.00019 * 6 5 4 34 34 H 1.08996 * 109.47432 * 59.99759 * 6 5 4 35 35 H 0.97002 * 120.00236 * 356.63601 * 11 9 7 36 36 H 1.08002 * 119.97177 * 359.97438 * 13 12 11 37 37 H 1.07997 * 119.92723 * 180.02562 * 14 13 12 38 38 H 1.07991 * 119.95919 * 180.27605 * 15 14 13 39 39 H 0.96995 * 119.99864 * 180.02562 * 21 20 18 40 40 H 1.07999 * 120.07429 * 180.25026 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0254 -0.9243 5 6 3.5455 -2.3357 -0.4136 6 6 5.0071 -2.2732 0.0345 7 6 3.2068 -0.7641 -2.2445 8 8 3.5870 -1.6227 -3.0132 9 6 2.8185 0.5823 -2.7615 10 8 2.4680 1.4508 -1.9895 11 7 2.8574 0.8328 -4.0852 12 6 2.4275 2.0687 -4.5753 13 6 2.6698 3.2282 -3.8478 14 6 2.2445 4.4503 -4.3316 15 6 1.5826 4.5250 -5.5423 16 6 1.3323 3.3694 -6.2715 17 8 0.6769 3.4433 -7.4579 18 6 0.5827 2.3066 -8.1770 19 1 0.9435 1.3756 -7.7654 20 6 0.0225 2.3330 -9.4451 21 7 -0.4166 3.4671 -9.9469 22 14 -0.1086 0.7581 -10.4411 23 1 0.4524 -0.3716 -9.6573 24 1 -1.5353 0.4851 -10.7501 25 1 0.6521 0.9085 -11.7076 26 6 1.7579 2.1400 -5.7886 27 1 -1.0498 -0.0001 -0.0003 28 1 3.0094 -0.2129 1.0052 29 1 3.0089 0.9783 -0.3175 30 1 2.9169 -2.6084 0.4343 31 1 3.4382 -3.0823 -1.2004 32 1 5.3128 -3.2481 0.4141 33 1 5.6356 -2.0004 -0.8133 34 1 5.1144 -1.5266 0.8213 35 1 3.1838 0.1551 -4.6977 36 1 3.1902 3.1736 -2.9030 37 1 2.4342 5.3498 -3.7648 38 1 1.2554 5.4824 -5.9198 39 1 -0.8088 3.4854 -10.8338 40 1 1.5681 1.2407 -6.3557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299187851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:40 Heat of formation + Delta-G solvation = 10.641526 kcal Electronic energy + Delta-G solvation = -25487.104691 eV Core-core repulsion = 21656.698895 eV Total energy + Delta-G solvation = -3830.405796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16707 -39.46897 -38.44331 -37.01726 -36.34013 -34.28922 -33.32598 -32.26750 -31.16109 -29.56096 -28.74150 -27.37442 -25.71402 -25.18336 -23.06310 -21.89261 -21.12612 -20.06230 -19.00988 -18.07376 -17.74842 -17.29867 -16.92810 -16.32224 -15.71012 -15.45140 -15.16664 -14.79256 -14.56950 -14.21860 -14.10529 -13.89557 -13.72669 -13.59102 -13.48659 -13.03897 -12.93936 -12.44961 -12.40643 -11.81465 -11.70275 -11.54052 -11.45805 -11.10412 -11.00376 -10.83189 -10.58862 -10.44590 -10.35888 -9.83789 -9.55668 -9.40712 -9.18377 -8.84390 -7.84867 -7.24540 -6.47624 -4.07578 1.16627 1.94738 2.10979 2.33271 2.72608 2.79053 3.10037 3.12842 3.15136 3.18324 3.54419 3.94596 4.20410 4.31571 4.53050 4.65772 4.80330 4.89245 5.06087 5.07393 5.23475 5.35131 5.40009 5.53485 5.62841 5.80625 5.83912 5.91113 5.97565 6.02755 6.14624 6.18805 6.53403 6.65947 6.84496 6.86893 7.05621 7.22231 7.34140 7.38063 7.53680 7.62244 7.70463 7.95679 8.01174 8.97917 9.66404 10.70221 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.003229 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.383657 B = 8669.314641 C = 9488.533253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.200 4.200 3 C 0.204 3.796 4 N -0.584 5.584 5 C 0.105 3.895 6 C -0.168 4.168 7 C 0.513 3.487 8 O -0.514 6.514 9 C 0.503 3.497 10 O -0.493 6.493 11 N -0.635 5.635 12 C 0.171 3.829 13 C -0.201 4.201 14 C -0.065 4.065 15 C -0.194 4.194 16 C 0.167 3.833 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.275 1.275 26 C -0.249 4.249 27 H 0.216 0.784 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.418 0.582 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.270 0.730 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 -8.965 19.380 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.201 4.201 3 C 0.083 3.917 4 N -0.317 5.317 5 C -0.016 4.016 6 C -0.226 4.226 7 C 0.296 3.704 8 O -0.389 6.389 9 C 0.285 3.715 10 O -0.368 6.368 11 N -0.280 5.280 12 C 0.078 3.922 13 C -0.221 4.221 14 C -0.084 4.084 15 C -0.213 4.213 16 C 0.113 3.887 17 O -0.078 6.078 18 C -0.469 4.469 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.270 4.270 27 H 0.233 0.767 28 H 0.116 0.884 29 H 0.156 0.844 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.255 0.745 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.080 0.920 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.500 -8.607 19.191 22.330 hybrid contribution -0.270 -1.245 -0.768 1.488 sum 7.230 -9.852 18.424 22.108 Atomic orbital electron populations 1.24939 0.95969 0.99810 0.99530 1.23250 0.94648 1.00964 1.01251 1.19040 0.84411 0.94363 0.93838 1.47836 1.62599 1.15390 1.05898 1.21638 0.95876 0.83928 1.00185 1.22145 0.95988 1.02527 1.01941 1.20171 0.78866 0.88418 0.82948 1.90768 1.45232 1.47207 1.55682 1.20007 0.79603 0.88415 0.83455 1.90677 1.44637 1.46635 1.54817 1.43130 1.61342 1.16470 1.07086 1.17395 0.97202 0.83337 0.94248 1.20607 1.08560 0.90926 1.02035 1.20541 0.96695 0.96646 0.94469 1.20312 1.07307 0.96905 0.96824 1.19056 0.89985 0.92261 0.87428 1.84007 1.62769 1.35695 1.25292 1.21346 1.42218 0.85854 0.97516 0.89096 1.25282 0.96235 0.98856 0.96031 1.70044 1.37178 1.25279 1.17093 0.85661 0.78431 0.79965 0.79467 1.19084 1.20121 1.20069 1.20865 1.08244 0.99241 0.98656 0.76724 0.88406 0.84405 0.89995 0.89101 0.91127 0.92002 0.92191 0.74488 0.85985 0.86429 0.86225 0.92015 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 19.25 29.55 0.57 -1.55 16 2 C -0.20 -2.39 12.48 -37.12 -0.46 -2.86 16 3 C 0.20 2.01 5.56 -6.83 -0.04 1.97 16 4 N -0.58 -6.26 2.46 -177.56 -0.44 -6.69 16 5 C 0.11 0.86 6.15 -4.04 -0.02 0.83 16 6 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 7 C 0.51 6.98 7.65 -11.63 -0.09 6.89 16 8 O -0.51 -7.81 15.98 5.49 0.09 -7.72 16 9 C 0.50 7.66 7.56 -11.63 -0.09 7.57 16 10 O -0.49 -7.88 9.88 5.48 0.05 -7.82 16 11 N -0.63 -10.24 5.32 -10.31 -0.05 -10.29 16 12 C 0.17 3.24 6.26 -83.77 -0.52 2.71 16 13 C -0.20 -3.67 8.68 -39.33 -0.34 -4.01 16 14 C -0.06 -1.17 10.03 -39.64 -0.40 -1.56 16 15 C -0.19 -4.05 9.99 -39.35 -0.39 -4.44 16 16 C 0.17 3.99 6.64 -39.13 -0.26 3.73 16 17 O -0.17 -4.91 9.76 0.05 0.00 -4.91 16 18 C -0.39 -10.87 9.49 30.89 0.29 -10.58 16 19 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 21 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 22 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 26 C -0.25 -5.37 9.08 -39.19 -0.36 -5.73 16 27 H 0.22 1.83 7.80 -54.10 -0.42 1.41 16 28 H 0.10 0.64 8.01 -51.93 -0.42 0.22 16 29 H 0.14 1.51 5.43 -51.92 -0.28 1.22 16 30 H 0.08 0.51 8.10 -51.92 -0.42 0.09 16 31 H 0.09 0.84 7.28 -51.93 -0.38 0.47 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.42 6.10 8.29 -40.82 -0.34 5.77 16 36 H 0.12 2.09 6.35 -52.49 -0.33 1.76 16 37 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -32.72 353.47 -5.53 -38.24 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -4.41 Total: 9.48 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.83 Total: -6.73 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.27 Total: -41.29 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.14 Total: -20.45 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.72 -5.53 -38.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299187851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.885 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds