Wall clock time and date at job start Tue Mar 31 2020 11:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47668 * 42.00916 * 3 2 1 5 5 C 1.46504 * 119.99724 * 262.03342 * 4 3 2 6 6 C 1.53004 * 109.46838 * 274.29800 * 5 4 3 7 7 C 1.34773 * 120.00490 * 82.02220 * 4 3 2 8 8 O 1.21358 * 120.00037 * 181.44132 * 7 4 3 9 9 C 1.49356 * 119.99698 * 1.44323 * 7 4 3 10 10 O 1.21369 * 120.00092 * 1.71415 * 9 7 4 11 11 N 1.34775 * 119.99659 * 181.71299 * 9 7 4 12 12 C 1.39730 * 119.99992 * 176.63677 * 11 9 7 13 13 C 1.39019 * 120.03856 * 36.29291 * 12 11 9 14 14 C 1.38141 * 120.06155 * 180.02562 * 13 12 11 15 15 C 1.38183 * 120.14352 * 359.71902 * 14 13 12 16 16 C 1.38918 * 120.08005 * 0.55537 * 15 14 13 17 17 O 1.35742 * 120.03074 * 179.71667 * 16 15 14 18 18 C 1.34837 * 117.00078 * 173.62126 * 17 16 15 19 19 H 1.07995 * 120.00124 * 5.21407 * 18 17 16 20 20 C 1.38653 * 119.99871 * 185.21081 * 18 17 16 21 21 N 1.31559 * 120.00304 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99625 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47530 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47274 * 120.00174 * 22 20 18 25 25 H 1.48506 * 109.47002 * 239.99860 * 22 20 18 26 26 C 1.38765 * 119.93912 * 359.44797 * 16 15 14 27 27 H 4.40641 * 5.51320 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47256 * 282.00312 * 3 2 1 29 29 H 1.09009 * 109.47137 * 162.00507 * 3 2 1 30 30 H 1.09007 * 109.46956 * 34.29213 * 5 4 3 31 31 H 1.08996 * 109.47306 * 154.29482 * 5 4 3 32 32 H 1.08994 * 109.47204 * 180.02562 * 6 5 4 33 33 H 1.09006 * 109.46815 * 300.00019 * 6 5 4 34 34 H 1.08996 * 109.47432 * 59.99759 * 6 5 4 35 35 H 0.97002 * 120.00236 * 356.63601 * 11 9 7 36 36 H 1.08002 * 119.97177 * 359.97438 * 13 12 11 37 37 H 1.07997 * 119.92723 * 180.02562 * 14 13 12 38 38 H 1.07991 * 119.95919 * 180.27605 * 15 14 13 39 39 H 0.96995 * 119.99864 * 180.02562 * 21 20 18 40 40 H 1.07999 * 120.07429 * 180.25026 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0254 -0.9243 5 6 3.5455 -2.3357 -0.4136 6 6 5.0071 -2.2732 0.0345 7 6 3.2068 -0.7641 -2.2445 8 8 3.5870 -1.6227 -3.0132 9 6 2.8185 0.5823 -2.7615 10 8 2.4680 1.4508 -1.9895 11 7 2.8574 0.8328 -4.0852 12 6 2.4275 2.0687 -4.5753 13 6 2.6698 3.2282 -3.8478 14 6 2.2445 4.4503 -4.3316 15 6 1.5826 4.5250 -5.5423 16 6 1.3323 3.3694 -6.2715 17 8 0.6769 3.4433 -7.4579 18 6 0.5827 2.3066 -8.1770 19 1 0.9435 1.3756 -7.7654 20 6 0.0225 2.3330 -9.4451 21 7 -0.4166 3.4671 -9.9469 22 14 -0.1086 0.7581 -10.4411 23 1 0.4524 -0.3716 -9.6573 24 1 -1.5353 0.4851 -10.7501 25 1 0.6521 0.9085 -11.7076 26 6 1.7579 2.1400 -5.7886 27 1 -1.0498 -0.0001 -0.0003 28 1 3.0094 -0.2129 1.0052 29 1 3.0089 0.9783 -0.3175 30 1 2.9169 -2.6084 0.4343 31 1 3.4382 -3.0823 -1.2004 32 1 5.3128 -3.2481 0.4141 33 1 5.6356 -2.0004 -0.8133 34 1 5.1144 -1.5266 0.8213 35 1 3.1838 0.1551 -4.6977 36 1 3.1902 3.1736 -2.9030 37 1 2.4342 5.3498 -3.7648 38 1 1.2554 5.4824 -5.9198 39 1 -0.8088 3.4854 -10.8338 40 1 1.5681 1.2407 -6.3557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299187851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:39 Heat of formation + Delta-G solvation = -10.463015 kcal Electronic energy + Delta-G solvation = -25488.019853 eV Core-core repulsion = 21656.698895 eV Total energy + Delta-G solvation = -3831.320957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34196 -40.92798 -39.89818 -38.31709 -37.64122 -35.68631 -34.25068 -34.12359 -31.91129 -31.13646 -30.38251 -28.25979 -27.42081 -26.47171 -24.12287 -23.54397 -22.40650 -21.27342 -20.15535 -19.75275 -19.13365 -18.50533 -18.04965 -17.35359 -17.08844 -16.85652 -16.68814 -16.12695 -15.89707 -15.75591 -15.50674 -15.25010 -14.80869 -14.67391 -14.61829 -14.27590 -14.24849 -13.65580 -13.58328 -13.28386 -13.02501 -12.86590 -12.72405 -12.52471 -12.40800 -12.11160 -12.03717 -11.51787 -11.46787 -11.37189 -11.15145 -10.77352 -10.48192 -10.14787 -9.43628 -8.96154 -8.48540 -6.17251 -0.06989 0.55998 0.68727 1.00847 1.34967 1.42513 1.52465 1.69123 1.88771 1.98599 2.16188 2.52534 2.79842 3.07728 3.15264 3.47242 3.52771 4.03074 4.07507 4.16472 4.27425 4.28900 4.37143 4.50801 4.52790 4.57993 4.75366 4.79043 4.95305 5.00220 5.06840 5.09267 5.18838 5.29561 5.33030 5.36733 5.61102 5.64147 5.77204 5.99809 6.02738 6.16105 6.49406 6.67662 6.74214 6.96198 7.74601 8.74413 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.003229 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.383657 B = 8669.314641 C = 9488.533253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.222 4.222 3 C 0.202 3.798 4 N -0.572 5.572 5 C 0.101 3.899 6 C -0.162 4.162 7 C 0.514 3.486 8 O -0.536 6.536 9 C 0.504 3.496 10 O -0.498 6.498 11 N -0.636 5.636 12 C 0.176 3.824 13 C -0.188 4.188 14 C -0.049 4.049 15 C -0.205 4.205 16 C 0.134 3.866 17 O -0.224 6.224 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.019 4.019 21 N -0.917 5.917 22 Si 1.015 2.985 23 H -0.253 1.253 24 H -0.269 1.269 25 H -0.267 1.267 26 C -0.256 4.256 27 H 0.235 0.765 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.424 0.576 36 H 0.143 0.857 37 H 0.161 0.839 38 H 0.123 0.877 39 H 0.273 0.727 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.956 -10.398 22.303 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.223 4.223 3 C 0.082 3.918 4 N -0.304 5.304 5 C -0.020 4.020 6 C -0.220 4.220 7 C 0.296 3.704 8 O -0.413 6.413 9 C 0.287 3.713 10 O -0.373 6.373 11 N -0.283 5.283 12 C 0.083 3.917 13 C -0.208 4.208 14 C -0.068 4.068 15 C -0.225 4.225 16 C 0.082 3.918 17 O -0.131 6.131 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.217 4.217 21 N -0.555 5.555 22 Si 0.835 3.165 23 H -0.177 1.177 24 H -0.194 1.194 25 H -0.192 1.192 26 C -0.278 4.278 27 H 0.251 0.749 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.126 0.874 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.262 0.738 36 H 0.161 0.839 37 H 0.179 0.821 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.749 -10.057 22.208 25.901 hybrid contribution -0.535 -0.759 -1.299 1.596 sum 8.214 -10.816 20.909 24.933 Atomic orbital electron populations 1.25656 0.97008 0.99471 0.99328 1.23809 0.95600 1.01332 1.01553 1.19223 0.83469 0.93727 0.95424 1.47972 1.61044 1.16505 1.04864 1.21898 0.97517 0.82077 1.00501 1.22108 0.94208 1.04098 1.01564 1.19856 0.79245 0.87324 0.83996 1.90767 1.46692 1.47401 1.56445 1.20383 0.78928 0.89203 0.82804 1.90677 1.44634 1.47170 1.54862 1.43126 1.61533 1.15743 1.07873 1.17430 0.96081 0.84948 0.93282 1.20988 1.07047 0.90591 1.02215 1.20986 0.94357 0.98296 0.93140 1.20580 1.07854 0.96255 0.97768 1.19588 0.90980 0.94212 0.86973 1.83972 1.65491 1.36312 1.27289 1.21811 1.42582 0.86369 0.98201 0.88254 1.26527 0.95582 1.02688 0.96921 1.70177 1.39448 1.27993 1.17912 0.84574 0.78742 0.75501 0.77691 1.17683 1.19365 1.19173 1.20859 1.08863 0.98275 0.99783 0.74863 0.84437 0.85323 0.87418 0.90458 0.89252 0.93926 0.90735 0.73762 0.83930 0.82133 0.85941 0.91756 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.15 19.25 74.32 1.43 -2.72 16 2 C -0.22 -4.79 12.48 31.13 0.39 -4.40 16 3 C 0.20 3.37 5.56 84.57 0.47 3.84 16 4 N -0.57 -10.85 2.46 -834.04 -2.05 -12.90 16 5 C 0.10 1.35 6.15 86.38 0.53 1.88 16 6 C -0.16 -1.63 10.24 71.98 0.74 -0.90 16 7 C 0.51 13.19 7.65 87.24 0.67 13.85 16 8 O -0.54 -15.79 15.98 -3.27 -0.05 -15.84 16 9 C 0.50 14.53 7.56 87.24 0.66 15.18 16 10 O -0.50 -14.82 9.88 -3.30 -0.03 -14.85 16 11 N -0.64 -19.88 5.32 -304.89 -1.62 -21.51 16 12 C 0.18 6.52 6.26 38.20 0.24 6.76 16 13 C -0.19 -6.41 8.68 22.43 0.19 -6.21 16 14 C -0.05 -1.66 10.03 22.23 0.22 -1.44 16 15 C -0.20 -8.56 9.99 22.42 0.22 -8.34 16 16 C 0.13 6.61 6.64 22.56 0.15 6.76 16 17 O -0.22 -13.35 9.76 -22.73 -0.22 -13.57 16 18 C -0.41 -23.93 9.49 67.92 0.64 -23.29 16 19 H 0.10 5.31 5.21 -2.91 -0.02 5.30 16 20 C -0.02 -1.09 5.49 84.83 0.47 -0.62 16 21 N -0.92 -55.91 13.67 21.61 0.30 -55.62 16 22 Si 1.02 42.90 29.55 68.60 2.03 44.92 16 23 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 26 C -0.26 -11.29 9.08 22.52 0.20 -11.08 16 27 H 0.23 3.55 7.80 -4.43 -0.03 3.52 16 28 H 0.14 1.20 8.01 -2.39 -0.02 1.18 16 29 H 0.13 2.45 5.43 -2.39 -0.01 2.44 16 30 H 0.11 0.94 8.10 -2.38 -0.02 0.92 16 31 H 0.08 1.30 7.28 -2.39 -0.02 1.28 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.42 12.20 8.29 -92.71 -0.77 11.43 16 36 H 0.14 4.36 6.35 -2.91 -0.02 4.34 16 37 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 38 H 0.12 4.95 8.06 -2.92 -0.02 4.93 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.12 5.53 5.64 -2.91 -0.02 5.52 16 Total: -1.00 -74.52 353.47 5.89 -68.62 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.32 Total: 31.46 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 7.23 Total: -10.72 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -3.38 Total: -90.03 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.31 Total: -44.26 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -74.52 5.89 -68.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299187851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.159 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds