Wall clock time and date at job start Tue Mar 31 2020 11:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35496 * 117.00375 * 2 1 4 4 C 1.39165 * 119.52696 * 179.97438 * 3 2 1 5 5 C 1.37955 * 119.26299 * 179.97438 * 4 3 2 6 6 C 1.40280 * 118.35818 * 359.97438 * 5 4 3 7 7 C 1.47620 * 120.49731 * 180.02562 * 6 5 4 8 8 O 1.21578 * 120.00158 * 330.48494 * 7 6 5 9 9 N 1.34780 * 119.99931 * 150.48679 * 7 6 5 10 10 C 1.46499 * 119.99588 * 5.96388 * 9 7 6 11 11 C 1.50697 * 109.47370 * 97.90191 * 10 9 7 12 12 H 1.08003 * 120.00242 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00343 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00398 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99794 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47087 * 89.99647 * 15 13 11 17 17 H 1.48503 * 109.46871 * 209.99584 * 15 13 11 18 18 H 1.48495 * 109.46972 * 329.99461 * 15 13 11 19 19 C 1.46496 * 119.99868 * 185.96420 * 9 7 6 20 20 C 1.50697 * 109.47152 * 90.00161 * 19 9 7 21 21 C 1.34512 * 125.79001 * 89.71590 * 20 19 9 22 22 C 1.41385 * 106.83705 * 179.88695 * 21 20 19 23 23 C 1.34514 * 106.84487 * 0.37539 * 22 21 20 24 24 O 1.34303 * 108.41887 * 359.76675 * 23 22 21 25 25 C 1.39524 * 119.00529 * 0.02562 * 6 5 4 26 26 N 1.31666 * 120.62526 * 0.02562 * 25 6 5 27 27 H 1.09002 * 109.46760 * 60.00026 * 1 2 3 28 28 H 1.08993 * 109.47604 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47149 * 300.00798 * 1 2 3 30 30 H 1.07993 * 120.37079 * 0.25361 * 4 3 2 31 31 H 1.08001 * 120.82005 * 180.02562 * 5 4 3 32 32 H 1.09011 * 109.46955 * 217.90041 * 10 9 7 33 33 H 1.08994 * 109.47741 * 337.89785 * 10 9 7 34 34 H 0.96996 * 120.00750 * 179.97438 * 14 13 11 35 35 H 1.09007 * 109.46785 * 209.99684 * 19 9 7 36 36 H 1.09002 * 109.47025 * 329.99432 * 19 9 7 37 37 H 1.07998 * 126.57983 * 0.02562 * 21 20 19 38 38 H 1.08005 * 126.57621 * 180.16262 * 22 21 20 39 39 H 1.07997 * 125.78970 * 179.75712 * 23 22 21 40 40 H 1.07995 * 119.69065 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4345 1.2685 0.0005 5 6 4.0552 2.5005 0.0000 6 6 3.2526 3.6510 -0.0016 7 6 3.8671 4.9932 -0.0028 8 8 4.9530 5.1651 0.5162 9 7 3.2243 6.0281 -0.5793 10 6 1.8619 5.8523 -1.0883 11 6 0.8751 6.3558 -0.0667 12 1 1.2274 6.7654 0.8685 13 6 -0.4777 6.2935 -0.3257 14 7 -1.3389 6.7324 0.5660 15 14 -1.0873 5.5843 -1.9429 16 1 -1.3009 4.1224 -1.7931 17 1 -2.3681 6.2359 -2.3175 18 1 -0.0776 5.8310 -3.0034 19 6 3.8881 7.3288 -0.6968 20 6 4.6375 7.3941 -2.0026 21 6 4.1408 7.8314 -3.1737 22 6 5.1804 7.7221 -4.1258 23 6 6.2476 7.2168 -3.4814 24 8 5.9130 7.0202 -2.1957 25 6 1.8647 3.5077 -0.0021 26 7 1.3139 2.3117 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 4.0210 0.3617 -0.0032 31 1 5.1325 2.5774 0.0000 32 1 1.7447 6.4147 -2.0147 33 1 1.6791 4.7950 -1.2797 34 1 -2.2906 6.6890 0.3836 35 1 3.1410 8.1220 -0.6667 36 1 4.5868 7.4562 0.1300 37 1 3.1407 8.1979 -3.3519 38 1 5.1267 7.9895 -5.1708 39 1 7.2100 7.0051 -3.9231 40 1 1.2362 4.3859 -0.0029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299575768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:27 Heat of formation + Delta-G solvation = 15.430039 kcal Electronic energy + Delta-G solvation = -26562.224212 eV Core-core repulsion = 22732.026062 eV Total energy + Delta-G solvation = -3830.198150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.28899 -40.62062 -39.17635 -37.34493 -35.63672 -33.05604 -32.64118 -32.20011 -31.48842 -29.80367 -28.28690 -27.28426 -25.67348 -23.63427 -22.93690 -22.48340 -21.43576 -20.48822 -19.20774 -18.18150 -17.44856 -17.28509 -16.89916 -16.48649 -15.95162 -15.85618 -15.21489 -14.77663 -14.46924 -14.36056 -14.22170 -14.01554 -13.35915 -13.04331 -13.01180 -12.75380 -12.58917 -12.53997 -12.49223 -12.38092 -11.79746 -11.51063 -11.27960 -11.05231 -10.97533 -10.61680 -10.45804 -9.84133 -9.69467 -9.66150 -9.54903 -9.13870 -8.91049 -8.30215 -8.21360 -8.02472 -6.42655 -4.48789 1.15317 1.51449 1.91115 2.78820 3.11042 3.14507 3.17055 3.21238 3.21838 3.41563 3.75166 4.11411 4.15453 4.65287 4.88393 4.94484 5.02975 5.23251 5.24818 5.28453 5.30333 5.34398 5.44594 5.45625 5.67036 5.75883 5.93058 5.99433 6.00486 6.13257 6.20077 6.22930 6.32925 6.45173 6.52431 6.72451 6.76404 7.03009 7.20229 7.38484 7.40546 7.86857 8.14905 8.18707 8.62189 8.70596 9.13312 10.67742 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010266 B = 0.005815 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.815988 B = 4814.119407 C = 6503.831419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.310 6.310 3 C 0.329 3.671 4 C -0.214 4.214 5 C 0.009 3.991 6 C -0.228 4.228 7 C 0.573 3.427 8 O -0.554 6.554 9 N -0.581 5.581 10 C 0.182 3.818 11 C -0.557 4.557 12 H 0.088 0.912 13 C 0.088 3.912 14 N -0.871 5.871 15 Si 0.856 3.144 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.260 1.260 19 C 0.197 3.803 20 C -0.017 4.017 21 C -0.202 4.202 22 C -0.217 4.217 23 C -0.050 4.050 24 O -0.167 6.167 25 C 0.159 3.841 26 N -0.544 5.544 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.272 0.728 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.197 0.803 40 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.287 -5.495 -6.536 11.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.217 6.217 3 C 0.150 3.850 4 C -0.234 4.234 5 C -0.017 4.017 6 C -0.233 4.233 7 C 0.362 3.638 8 O -0.433 6.433 9 N -0.311 5.311 10 C 0.062 3.938 11 C -0.594 4.594 12 H 0.106 0.894 13 C -0.119 4.119 14 N -0.506 5.506 15 Si 0.681 3.319 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.185 1.185 19 C 0.073 3.927 20 C -0.069 4.069 21 C -0.222 4.222 22 C -0.236 4.236 23 C -0.118 4.118 24 O -0.062 6.062 25 C 0.005 3.995 26 N -0.268 5.268 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.114 0.886 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.214 0.786 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 6.999 -5.853 -5.976 10.906 hybrid contribution -0.021 -0.130 -1.213 1.220 sum 6.978 -5.983 -7.189 11.669 Atomic orbital electron populations 1.22871 0.77225 1.02531 1.03064 1.86146 1.23013 1.25065 1.87496 1.20263 0.89522 0.85175 0.90005 1.20835 0.91793 0.99077 1.11718 1.21384 1.00500 0.90003 0.89835 1.20795 0.95606 0.94467 1.12464 1.17915 0.84169 0.83967 0.77756 1.90710 1.21804 1.84730 1.46103 1.47756 1.16227 1.09162 1.57933 1.20640 0.78482 0.98572 0.96141 1.21326 0.90078 1.43577 1.04428 0.89428 1.24883 0.96528 0.94023 0.96460 1.69861 1.02732 1.43667 1.34295 0.87120 0.79537 0.80859 0.84365 1.18618 1.20360 1.18475 1.19748 0.95333 0.87018 0.90557 1.23236 0.82643 1.02114 0.98886 1.21685 1.00981 1.07380 0.92204 1.21797 0.93853 1.07144 1.00839 1.23979 1.00807 1.05072 0.81993 1.84105 1.28154 1.65668 1.28317 1.25350 0.93421 0.95760 0.84999 1.67682 1.40175 0.98630 1.20286 0.92156 0.88888 0.91934 0.84121 0.83724 0.94439 0.93355 0.91804 0.86265 0.88564 0.83329 0.83832 0.78624 0.75609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.37 101.05 1.05 1.54 16 2 O -0.31 -4.78 10.46 -18.18 -0.19 -4.97 16 3 C 0.33 5.71 7.49 -16.96 -0.13 5.58 16 4 C -0.21 -3.30 10.02 -39.34 -0.39 -3.69 16 5 C 0.01 0.14 9.72 -38.92 -0.38 -0.24 16 6 C -0.23 -4.48 5.59 -104.82 -0.59 -5.06 16 7 C 0.57 11.99 7.47 -12.43 -0.09 11.90 16 8 O -0.55 -12.38 16.31 5.30 0.09 -12.29 16 9 N -0.58 -11.73 2.45 -177.64 -0.43 -12.16 16 10 C 0.18 3.87 3.71 -5.20 -0.02 3.85 16 11 C -0.56 -13.54 8.03 -34.44 -0.28 -13.82 16 12 H 0.09 2.37 8.06 -52.48 -0.42 1.94 16 13 C 0.09 2.23 5.34 -17.82 -0.10 2.13 16 14 N -0.87 -23.63 13.96 55.43 0.77 -22.86 16 15 Si 0.86 18.77 27.36 -169.99 -4.65 14.11 16 16 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.26 -5.44 6.54 56.52 0.37 -5.08 16 19 C 0.20 3.51 5.99 -5.20 -0.03 3.48 16 20 C -0.02 -0.29 6.90 -35.63 -0.25 -0.54 16 21 C -0.20 -3.17 10.81 -39.70 -0.43 -3.60 16 22 C -0.22 -2.96 10.91 -39.70 -0.43 -3.39 16 23 C -0.05 -0.67 12.09 29.42 0.36 -0.32 16 24 O -0.17 -2.85 10.65 5.69 0.06 -2.79 16 25 C 0.16 3.29 8.67 -17.14 -0.15 3.14 16 26 N -0.54 -10.72 9.18 -12.97 -0.12 -10.84 16 27 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.15 2.14 7.98 -52.49 -0.42 1.73 16 32 H 0.04 0.78 7.19 -51.92 -0.37 0.41 16 33 H 0.05 1.05 3.53 -51.93 -0.18 0.87 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.12 1.98 8.07 -51.93 -0.42 1.56 16 36 H 0.10 1.72 7.35 -51.93 -0.38 1.33 16 37 H 0.15 2.19 8.06 -52.49 -0.42 1.76 16 38 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.23 5.13 2.88 -52.49 -0.15 4.98 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -29.90 344.18 -5.61 -35.51 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.47 Total: 10.14 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.85 Total: 0.97 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.22 Total: -45.86 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.04 Total: -20.05 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.65 Total: 14.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.90 -5.61 -35.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299575768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.938 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds