Wall clock time and date at job start Tue Mar 31 2020 11:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35496 * 117.00375 * 2 1 4 4 C 1.39165 * 119.52696 * 179.97438 * 3 2 1 5 5 C 1.37955 * 119.26299 * 179.97438 * 4 3 2 6 6 C 1.40280 * 118.35818 * 359.97438 * 5 4 3 7 7 C 1.47620 * 120.49731 * 180.02562 * 6 5 4 8 8 O 1.21578 * 120.00158 * 330.48494 * 7 6 5 9 9 N 1.34780 * 119.99931 * 150.48679 * 7 6 5 10 10 C 1.46499 * 119.99588 * 5.96388 * 9 7 6 11 11 C 1.50697 * 109.47370 * 97.90191 * 10 9 7 12 12 H 1.08003 * 120.00242 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00343 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00398 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99794 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47087 * 89.99647 * 15 13 11 17 17 H 1.48503 * 109.46871 * 209.99584 * 15 13 11 18 18 H 1.48495 * 109.46972 * 329.99461 * 15 13 11 19 19 C 1.46496 * 119.99868 * 185.96420 * 9 7 6 20 20 C 1.50697 * 109.47152 * 90.00161 * 19 9 7 21 21 C 1.34512 * 125.79001 * 89.71590 * 20 19 9 22 22 C 1.41385 * 106.83705 * 179.88695 * 21 20 19 23 23 C 1.34514 * 106.84487 * 0.37539 * 22 21 20 24 24 O 1.34303 * 108.41887 * 359.76675 * 23 22 21 25 25 C 1.39524 * 119.00529 * 0.02562 * 6 5 4 26 26 N 1.31666 * 120.62526 * 0.02562 * 25 6 5 27 27 H 1.09002 * 109.46760 * 60.00026 * 1 2 3 28 28 H 1.08993 * 109.47604 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47149 * 300.00798 * 1 2 3 30 30 H 1.07993 * 120.37079 * 0.25361 * 4 3 2 31 31 H 1.08001 * 120.82005 * 180.02562 * 5 4 3 32 32 H 1.09011 * 109.46955 * 217.90041 * 10 9 7 33 33 H 1.08994 * 109.47741 * 337.89785 * 10 9 7 34 34 H 0.96996 * 120.00750 * 179.97438 * 14 13 11 35 35 H 1.09007 * 109.46785 * 209.99684 * 19 9 7 36 36 H 1.09002 * 109.47025 * 329.99432 * 19 9 7 37 37 H 1.07998 * 126.57983 * 0.02562 * 21 20 19 38 38 H 1.08005 * 126.57621 * 180.16262 * 22 21 20 39 39 H 1.07997 * 125.78970 * 179.75712 * 23 22 21 40 40 H 1.07995 * 119.69065 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4345 1.2685 0.0005 5 6 4.0552 2.5005 0.0000 6 6 3.2526 3.6510 -0.0016 7 6 3.8671 4.9932 -0.0028 8 8 4.9530 5.1651 0.5162 9 7 3.2243 6.0281 -0.5793 10 6 1.8619 5.8523 -1.0883 11 6 0.8751 6.3558 -0.0667 12 1 1.2274 6.7654 0.8685 13 6 -0.4777 6.2935 -0.3257 14 7 -1.3389 6.7324 0.5660 15 14 -1.0873 5.5843 -1.9429 16 1 -1.3009 4.1224 -1.7931 17 1 -2.3681 6.2359 -2.3175 18 1 -0.0776 5.8310 -3.0034 19 6 3.8881 7.3288 -0.6968 20 6 4.6375 7.3941 -2.0026 21 6 4.1408 7.8314 -3.1737 22 6 5.1804 7.7221 -4.1258 23 6 6.2476 7.2168 -3.4814 24 8 5.9130 7.0202 -2.1957 25 6 1.8647 3.5077 -0.0021 26 7 1.3139 2.3117 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 4.0210 0.3617 -0.0032 31 1 5.1325 2.5774 0.0000 32 1 1.7447 6.4147 -2.0147 33 1 1.6791 4.7950 -1.2797 34 1 -2.2906 6.6890 0.3836 35 1 3.1410 8.1220 -0.6667 36 1 4.5868 7.4562 0.1300 37 1 3.1407 8.1979 -3.3519 38 1 5.1267 7.9895 -5.1708 39 1 7.2100 7.0051 -3.9231 40 1 1.2362 4.3859 -0.0029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299575768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:26 Heat of formation + Delta-G solvation = -4.643540 kcal Electronic energy + Delta-G solvation = -26563.094668 eV Core-core repulsion = 22732.026062 eV Total energy + Delta-G solvation = -3831.068606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.46862 -42.05239 -40.64016 -38.68479 -37.29312 -34.83023 -33.90515 -33.60175 -32.91342 -31.14875 -29.98644 -28.44383 -26.99556 -25.22638 -24.38250 -24.03833 -22.60054 -21.73623 -20.68023 -19.46682 -19.22578 -18.78132 -18.22066 -18.00058 -17.27363 -17.10563 -16.61992 -16.35872 -16.03233 -15.89013 -15.55596 -15.25452 -14.88383 -14.52551 -14.36058 -14.33677 -14.03929 -13.85123 -13.69748 -13.55333 -13.20477 -12.94148 -12.75051 -12.60194 -12.41570 -12.19587 -12.09088 -11.75232 -11.15132 -11.06555 -10.86086 -10.82792 -10.59214 -9.76362 -9.57656 -9.41667 -8.38942 -6.48264 -0.28727 0.14488 0.71424 1.35846 1.40064 1.44759 1.63643 1.71100 2.01028 2.13253 2.27028 2.31444 2.69256 2.93386 3.29479 3.51807 3.81882 3.90350 4.00148 4.05620 4.14757 4.16927 4.35647 4.39179 4.43768 4.49583 4.57373 4.63895 4.73922 4.77681 4.85858 4.93819 5.03347 5.08838 5.19307 5.27546 5.31402 5.48220 5.63646 6.04456 6.08610 6.24305 6.43313 6.61856 6.71861 7.04493 7.18839 8.75353 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010266 B = 0.005815 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.815988 B = 4814.119407 C = 6503.831419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.306 6.306 3 C 0.322 3.678 4 C -0.192 4.192 5 C 0.013 3.987 6 C -0.244 4.244 7 C 0.568 3.432 8 O -0.575 6.575 9 N -0.584 5.584 10 C 0.195 3.805 11 C -0.547 4.547 12 H 0.047 0.953 13 C 0.043 3.957 14 N -0.919 5.919 15 Si 0.912 3.088 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.240 1.240 19 C 0.196 3.804 20 C -0.047 4.047 21 C -0.202 4.202 22 C -0.223 4.223 23 C -0.042 4.042 24 O -0.191 6.191 25 C 0.143 3.857 26 N -0.563 5.563 27 H 0.051 0.949 28 H 0.134 0.866 29 H 0.051 0.949 30 H 0.182 0.818 31 H 0.166 0.834 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.273 0.727 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.239 0.761 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.641 -7.525 -8.981 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.212 6.212 3 C 0.143 3.857 4 C -0.212 4.212 5 C -0.013 4.013 6 C -0.250 4.250 7 C 0.358 3.642 8 O -0.457 6.457 9 N -0.312 5.312 10 C 0.073 3.927 11 C -0.585 4.585 12 H 0.065 0.935 13 C -0.159 4.159 14 N -0.557 5.557 15 Si 0.735 3.265 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.163 1.163 19 C 0.073 3.927 20 C -0.098 4.098 21 C -0.222 4.222 22 C -0.242 4.242 23 C -0.109 4.109 24 O -0.088 6.088 25 C -0.012 4.012 26 N -0.288 5.288 27 H 0.070 0.930 28 H 0.152 0.848 29 H 0.070 0.930 30 H 0.199 0.801 31 H 0.183 0.817 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.172 0.828 38 H 0.192 0.808 39 H 0.255 0.745 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 8.360 -7.872 -8.435 14.248 hybrid contribution -0.374 0.427 -0.406 0.698 sum 7.986 -7.445 -8.841 14.049 Atomic orbital electron populations 1.23110 0.75920 1.04962 1.02125 1.86171 1.24250 1.23737 1.87059 1.20603 0.90468 0.85091 0.89535 1.21234 0.91213 0.99997 1.08791 1.21647 1.01326 0.89407 0.88882 1.20801 0.95520 0.94757 1.13884 1.18208 0.84015 0.84660 0.77363 1.90680 1.22714 1.85202 1.47101 1.47817 1.15838 1.09964 1.57622 1.20414 0.78287 0.98731 0.95220 1.21324 0.90905 1.42644 1.03602 0.93462 1.25567 0.96585 0.94269 0.99526 1.69984 1.03113 1.46001 1.36563 0.86225 0.79414 0.79922 0.80979 1.18573 1.20161 1.16321 1.19739 0.95349 0.86128 0.91458 1.22939 0.83314 1.04758 0.98744 1.21939 1.01746 1.06236 0.92286 1.22156 0.93001 1.07065 1.01975 1.24892 1.02369 1.03110 0.80518 1.84081 1.28061 1.66290 1.30332 1.24825 0.93600 0.95646 0.87119 1.67569 1.41162 0.98969 1.21067 0.92975 0.84800 0.93012 0.80083 0.81653 0.93562 0.92744 0.91733 0.85966 0.89406 0.82836 0.80845 0.74482 0.77995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.37 113.37 1.18 1.97 16 2 O -0.31 -8.59 10.46 -87.97 -0.92 -9.52 16 3 C 0.32 10.51 7.49 84.83 0.64 11.15 16 4 C -0.19 -5.33 10.02 22.43 0.22 -5.11 16 5 C 0.01 0.40 9.72 22.70 0.22 0.62 16 6 C -0.24 -9.55 5.59 -19.99 -0.11 -9.66 16 7 C 0.57 24.18 7.47 86.72 0.65 24.83 16 8 O -0.58 -26.13 16.31 -3.96 -0.06 -26.19 16 9 N -0.58 -24.16 2.45 -834.18 -2.04 -26.20 16 10 C 0.19 8.40 3.71 85.63 0.32 8.71 16 11 C -0.55 -27.75 8.03 25.60 0.21 -27.55 16 12 H 0.05 2.73 8.06 -2.91 -0.02 2.70 16 13 C 0.04 2.24 5.34 84.65 0.45 2.70 16 14 N -0.92 -51.91 13.96 21.45 0.30 -51.61 16 15 Si 0.91 38.85 27.36 68.60 1.88 40.73 16 16 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 19 C 0.20 7.24 5.99 85.63 0.51 7.75 16 20 C -0.05 -1.59 6.90 24.83 0.17 -1.42 16 21 C -0.20 -6.07 10.81 22.19 0.24 -5.83 16 22 C -0.22 -5.44 10.91 22.19 0.24 -5.20 16 23 C -0.04 -1.00 12.09 66.97 0.81 -0.19 16 24 O -0.19 -6.35 10.65 -2.55 -0.03 -6.37 16 25 C 0.14 5.96 8.67 85.03 0.74 6.70 16 26 N -0.56 -21.94 9.18 -307.82 -2.82 -24.76 16 27 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 28 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 30 H 0.18 3.55 8.06 -2.91 -0.02 3.52 16 31 H 0.17 4.47 7.98 -2.91 -0.02 4.45 16 32 H 0.05 1.91 7.19 -2.38 -0.02 1.89 16 33 H 0.06 2.37 3.53 -2.39 -0.01 2.36 16 34 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.12 4.28 8.07 -2.38 -0.02 4.26 16 36 H 0.09 3.32 7.35 -2.39 -0.02 3.30 16 37 H 0.15 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 39 H 0.24 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.20 9.46 2.88 -2.91 -0.01 9.46 16 Total: -1.00 -67.22 344.18 3.80 -63.41 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 1.02 Total: 31.05 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.48 Total: 9.47 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -4.57 Total: -102.58 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.01 Total: -42.08 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.88 Total: 40.73 kcal Total: -67.22 3.80 -63.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299575768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.769 kcal (2) G-P(sol) polarization free energy of solvation -67.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds