Wall clock time and date at job start Tue Mar 31 2020 11:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35889 * 117.00445 * 2 1 4 4 C 1.38803 * 119.88320 * 0.02580 * 3 2 1 5 5 C 1.38254 * 119.70901 * 180.17807 * 4 3 2 6 6 C 1.37718 * 120.07487 * 359.97438 * 5 4 3 7 7 C 1.39018 * 120.86535 * 359.59818 * 6 5 4 8 8 C 1.38416 * 119.88826 * 179.97438 * 3 2 1 9 9 O 1.36135 * 111.25962 * 180.62507 * 7 6 5 10 10 C 1.43752 * 109.29045 * 341.40091 * 9 7 6 11 11 C 1.51665 * 132.16591 * 179.63723 * 6 5 4 12 12 H 1.08998 * 110.94530 * 313.85470 * 11 6 5 13 13 C 1.52999 * 110.94483 * 77.51411 * 11 6 5 14 14 C 1.50696 * 109.47148 * 181.97680 * 13 11 6 15 15 O 1.21294 * 119.99995 * 0.02562 * 14 13 11 16 16 N 1.34776 * 120.00223 * 179.97438 * 14 13 11 17 17 C 1.37098 * 120.00580 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99799 * 342.27705 * 17 16 14 19 19 C 1.38946 * 120.00516 * 162.28019 * 17 16 14 20 20 N 1.31410 * 119.99599 * 339.21206 * 19 17 16 21 21 Si 1.86797 * 120.00221 * 159.48910 * 19 17 16 22 22 H 1.48496 * 109.47261 * 179.72565 * 21 19 17 23 23 H 1.48501 * 109.47110 * 299.72351 * 21 19 17 24 24 H 1.48500 * 109.47352 * 59.72166 * 21 19 17 25 25 C 1.46501 * 119.99618 * 0.02562 * 16 14 13 26 26 C 1.47204 * 109.47267 * 276.09356 * 25 16 14 27 27 N 8.95984 * 96.97466 * 25.46703 * 2 1 3 28 28 H 1.08998 * 109.47182 * 59.99840 * 1 2 3 29 29 H 1.08993 * 109.47374 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46804 * 300.00271 * 1 2 3 31 31 H 1.07996 * 120.13863 * 0.19075 * 4 3 2 32 32 H 1.08001 * 119.96678 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.89917 * 0.02562 * 8 3 2 34 34 H 1.09001 * 110.74531 * 269.24474 * 10 9 7 35 35 H 1.09002 * 110.75076 * 145.89986 * 10 9 7 36 36 H 1.09006 * 109.46769 * 61.97738 * 13 11 6 37 37 H 1.09000 * 109.47220 * 301.97899 * 13 11 6 38 38 H 0.97003 * 120.00204 * 180.02562 * 20 19 17 39 39 H 1.08997 * 109.47171 * 36.09416 * 25 16 14 40 40 H 1.09004 * 109.47079 * 156.09157 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 1.2878 2.3733 0.0005 5 6 1.9193 3.6032 -0.0032 6 6 3.2947 3.6728 -0.0069 7 6 4.0673 2.5171 0.0014 8 6 3.4285 1.2804 0.0005 9 8 5.3963 2.8119 0.0097 10 6 5.5845 4.1690 -0.4254 11 6 4.2547 4.8469 -0.0185 12 1 3.9536 5.5891 -0.7578 13 6 4.3649 5.4771 1.3713 14 6 5.2872 6.6673 1.3115 15 8 5.8050 6.9811 0.2605 16 7 5.5358 7.3838 2.4256 17 6 6.3745 8.4670 2.3712 18 1 7.0514 8.5845 1.5379 19 6 6.3537 9.4136 3.3881 20 7 5.3008 9.5176 4.1675 21 14 7.8193 10.5436 3.6424 22 1 7.5466 11.4599 4.7787 23 1 9.0254 9.7303 3.9409 24 1 8.0511 11.3388 2.4099 25 6 4.9099 7.0052 3.6949 26 6 3.5581 7.5834 3.7672 27 7 2.5170 8.0294 3.8241 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2093 2.3173 0.0041 32 1 1.3334 4.5105 -0.0024 33 1 4.0132 0.3724 0.0005 34 1 5.7253 4.2122 -1.5054 35 1 6.4263 4.6277 0.0935 36 1 4.7633 4.7435 2.0723 37 1 3.3779 5.7985 1.7038 38 1 5.2861 10.1787 4.8772 39 1 4.8443 5.9190 3.7579 40 1 5.5108 7.3814 4.5229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341119030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:48 Heat of formation + Delta-G solvation = -33.769315 kcal Electronic energy + Delta-G solvation = -25918.454362 eV Core-core repulsion = 22086.122768 eV Total energy + Delta-G solvation = -3832.331594 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26496 -39.58989 -38.75930 -36.28236 -35.90760 -34.49372 -33.32076 -31.89652 -30.56354 -29.18510 -27.82193 -27.35197 -26.86313 -24.59023 -23.20752 -21.87180 -21.00945 -19.12691 -18.20121 -17.91260 -17.03900 -16.66751 -16.34233 -16.09788 -16.04621 -15.73279 -15.21510 -14.67760 -14.35965 -14.21247 -13.96302 -13.57952 -13.24997 -13.05431 -12.94104 -12.65704 -12.39499 -12.30659 -12.14963 -11.90710 -11.63026 -11.56349 -11.42596 -11.28248 -11.18092 -10.80383 -10.72612 -10.57888 -10.46134 -10.39782 -10.25977 -9.30093 -8.70700 -8.57106 -8.10104 -7.95448 -6.54787 -4.04853 1.31566 1.33002 2.82365 3.08927 3.19469 3.21460 3.49562 3.58606 3.74747 3.78161 3.94684 4.07816 4.48071 4.67444 4.77541 4.83025 4.85991 4.91147 4.92181 5.05680 5.12966 5.16708 5.20859 5.22906 5.54648 5.61667 5.65246 5.69387 5.83859 5.95994 6.06946 6.10782 6.15319 6.25089 6.30674 6.39382 6.48133 6.51701 7.09464 7.30473 7.42530 7.84058 8.22301 8.69184 8.94301 9.14490 9.67093 10.51168 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.023208 B = 0.003244 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.192036 B = 8630.289902 C = 9430.594625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.158 3.842 4 C -0.240 4.240 5 C -0.027 4.027 6 C -0.200 4.200 7 C 0.152 3.848 8 C -0.179 4.179 9 O -0.303 6.303 10 C 0.063 3.937 11 C -0.050 4.050 12 H 0.103 0.897 13 C -0.125 4.125 14 C 0.454 3.546 15 O -0.575 6.575 16 N -0.440 5.440 17 C -0.315 4.315 18 H 0.109 0.891 19 C 0.032 3.968 20 N -0.878 5.878 21 Si 0.928 3.072 22 H -0.285 1.285 23 H -0.271 1.271 24 H -0.273 1.273 25 C 0.219 3.781 26 C 0.247 3.753 27 N -0.472 5.472 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.274 0.726 39 H 0.084 0.916 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.614 -15.773 -4.215 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.112 3.888 4 C -0.258 4.258 5 C -0.045 4.045 6 C -0.201 4.201 7 C 0.106 3.894 8 C -0.199 4.199 9 O -0.217 6.217 10 C -0.011 4.011 11 C -0.069 4.069 12 H 0.121 0.879 13 C -0.165 4.165 14 C 0.243 3.757 15 O -0.458 6.458 16 N -0.160 5.160 17 C -0.442 4.442 18 H 0.127 0.873 19 C -0.171 4.171 20 N -0.516 5.516 21 Si 0.755 3.245 22 H -0.210 1.210 23 H -0.197 1.197 24 H -0.198 1.198 25 C 0.092 3.908 26 C -0.072 4.072 27 N -0.152 5.152 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.644 -15.133 -4.427 17.110 hybrid contribution 0.570 1.005 0.366 1.211 sum -6.074 -14.129 -4.061 15.906 Atomic orbital electron populations 1.23061 0.78194 1.03820 1.01576 1.86029 1.21460 1.26846 1.88683 1.18372 0.91178 0.84123 0.95096 1.21044 0.99870 0.91796 1.13137 1.20069 0.92399 0.97374 0.94671 1.20791 0.94396 0.94771 1.10107 1.19160 0.83968 0.93166 0.93153 1.19100 0.91217 0.96049 1.13500 1.86826 1.20255 1.32771 1.81818 1.23974 0.99182 0.77304 1.00615 1.20983 0.92342 0.95226 0.98367 0.87933 1.21610 1.00828 0.97196 0.96894 1.20049 0.85229 0.86487 0.83936 1.90537 1.54271 1.72115 1.28898 1.43631 1.40613 1.26723 1.05058 1.19684 1.15154 1.00080 1.09276 0.87339 1.25284 0.97541 0.97365 0.96950 1.69852 1.25972 1.35394 1.20413 0.85954 0.81110 0.79381 0.78090 1.21017 1.19665 1.19805 1.18771 0.84519 0.96135 0.91424 1.29221 0.93765 0.91689 0.92502 1.80813 1.15258 1.10489 1.08682 0.92554 0.88301 0.92478 0.85170 0.85451 0.84819 0.90357 0.86385 0.89605 0.89744 0.91522 0.89829 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.50 10.49 -19.39 -0.20 -3.70 16 3 C 0.16 1.95 6.67 -39.31 -0.26 1.68 16 4 C -0.24 -2.75 9.04 -39.37 -0.36 -3.11 16 5 C -0.03 -0.34 10.02 -39.77 -0.40 -0.74 16 6 C -0.20 -2.87 5.63 -104.05 -0.59 -3.46 16 7 C 0.15 2.23 7.04 -38.93 -0.27 1.95 16 8 C -0.18 -2.40 10.00 -39.16 -0.39 -2.79 16 9 O -0.30 -4.66 11.10 -20.17 -0.22 -4.89 16 10 C 0.06 0.95 7.00 38.06 0.27 1.22 16 11 C -0.05 -0.78 2.68 -90.40 -0.24 -1.03 16 12 H 0.10 1.67 7.97 -51.93 -0.41 1.25 16 13 C -0.12 -2.10 3.83 -27.89 -0.11 -2.20 16 14 C 0.45 9.65 7.08 -10.99 -0.08 9.57 16 15 O -0.57 -13.75 14.57 5.55 0.08 -13.67 16 16 N -0.44 -9.89 2.60 -117.93 -0.31 -10.19 16 17 C -0.32 -7.85 9.33 -14.93 -0.14 -7.99 16 18 H 0.11 2.84 7.38 -52.48 -0.39 2.45 16 19 C 0.03 0.78 4.88 -17.47 -0.09 0.69 16 20 N -0.88 -21.70 9.46 55.50 0.52 -21.18 16 21 Si 0.93 19.26 29.60 -169.99 -5.03 14.23 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 C 0.22 4.24 4.91 -6.83 -0.03 4.21 16 26 C 0.25 5.33 12.95 -20.82 -0.27 5.06 16 27 N -0.47 -11.01 18.52 42.08 0.78 -10.23 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.35 7.65 -51.93 -0.40 -0.04 16 31 H 0.13 1.16 6.29 -52.49 -0.33 0.83 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.12 1.88 6.91 -51.93 -0.36 1.53 16 36 H 0.09 1.30 7.42 -51.93 -0.39 0.91 16 37 H 0.08 1.42 7.49 -51.93 -0.39 1.03 16 38 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 39 H 0.08 1.25 6.70 -51.93 -0.35 0.91 16 40 H 0.13 2.56 6.42 -51.93 -0.33 2.22 16 LS Contribution 341.13 15.07 5.14 5.14 Total: -1.00 -30.22 341.13 -5.77 -35.99 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.57 Total: 4.23 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -1.97 Total: 4.26 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 1.00 Total: -41.60 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.35 Total: -22.25 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.22 -5.77 -35.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341119030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.223 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds