Wall clock time and date at job start Tue Mar 31 2020 11:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35889 * 117.00445 * 2 1 4 4 C 1.38803 * 119.88320 * 0.02580 * 3 2 1 5 5 C 1.38254 * 119.70901 * 180.17807 * 4 3 2 6 6 C 1.37718 * 120.07487 * 359.97438 * 5 4 3 7 7 C 1.39018 * 120.86535 * 359.59818 * 6 5 4 8 8 C 1.38416 * 119.88826 * 179.97438 * 3 2 1 9 9 O 1.36135 * 111.25962 * 180.62507 * 7 6 5 10 10 C 1.43752 * 109.29045 * 341.40091 * 9 7 6 11 11 C 1.51665 * 132.16591 * 179.63723 * 6 5 4 12 12 H 1.08998 * 110.94530 * 313.85470 * 11 6 5 13 13 C 1.52999 * 110.94483 * 77.51411 * 11 6 5 14 14 C 1.50696 * 109.47148 * 181.97680 * 13 11 6 15 15 O 1.21294 * 119.99995 * 0.02562 * 14 13 11 16 16 N 1.34776 * 120.00223 * 179.97438 * 14 13 11 17 17 C 1.37098 * 120.00580 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99799 * 342.27705 * 17 16 14 19 19 C 1.38946 * 120.00516 * 162.28019 * 17 16 14 20 20 N 1.31410 * 119.99599 * 339.21206 * 19 17 16 21 21 Si 1.86797 * 120.00221 * 159.48910 * 19 17 16 22 22 H 1.48496 * 109.47261 * 179.72565 * 21 19 17 23 23 H 1.48501 * 109.47110 * 299.72351 * 21 19 17 24 24 H 1.48500 * 109.47352 * 59.72166 * 21 19 17 25 25 C 1.46501 * 119.99618 * 0.02562 * 16 14 13 26 26 C 1.47204 * 109.47267 * 276.09356 * 25 16 14 27 27 N 8.95984 * 96.97466 * 25.46703 * 2 1 3 28 28 H 1.08998 * 109.47182 * 59.99840 * 1 2 3 29 29 H 1.08993 * 109.47374 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46804 * 300.00271 * 1 2 3 31 31 H 1.07996 * 120.13863 * 0.19075 * 4 3 2 32 32 H 1.08001 * 119.96678 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.89917 * 0.02562 * 8 3 2 34 34 H 1.09001 * 110.74531 * 269.24474 * 10 9 7 35 35 H 1.09002 * 110.75076 * 145.89986 * 10 9 7 36 36 H 1.09006 * 109.46769 * 61.97738 * 13 11 6 37 37 H 1.09000 * 109.47220 * 301.97899 * 13 11 6 38 38 H 0.97003 * 120.00204 * 180.02562 * 20 19 17 39 39 H 1.08997 * 109.47171 * 36.09416 * 25 16 14 40 40 H 1.09004 * 109.47079 * 156.09157 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 1.2878 2.3733 0.0005 5 6 1.9193 3.6032 -0.0032 6 6 3.2947 3.6728 -0.0069 7 6 4.0673 2.5171 0.0014 8 6 3.4285 1.2804 0.0005 9 8 5.3963 2.8119 0.0097 10 6 5.5845 4.1690 -0.4254 11 6 4.2547 4.8469 -0.0185 12 1 3.9536 5.5891 -0.7578 13 6 4.3649 5.4771 1.3713 14 6 5.2872 6.6673 1.3115 15 8 5.8050 6.9811 0.2605 16 7 5.5358 7.3838 2.4256 17 6 6.3745 8.4670 2.3712 18 1 7.0514 8.5845 1.5379 19 6 6.3537 9.4136 3.3881 20 7 5.3008 9.5176 4.1675 21 14 7.8193 10.5436 3.6424 22 1 7.5466 11.4599 4.7787 23 1 9.0254 9.7303 3.9409 24 1 8.0511 11.3388 2.4099 25 6 4.9099 7.0052 3.6949 26 6 3.5581 7.5834 3.7672 27 7 2.5170 8.0294 3.8241 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2093 2.3173 0.0041 32 1 1.3334 4.5105 -0.0024 33 1 4.0132 0.3724 0.0005 34 1 5.7253 4.2122 -1.5054 35 1 6.4263 4.6277 0.0935 36 1 4.7633 4.7435 2.0723 37 1 3.3779 5.7985 1.7038 38 1 5.2861 10.1787 4.8772 39 1 4.8443 5.9190 3.7579 40 1 5.5108 7.3814 4.5229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341119030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:47 Heat of formation + Delta-G solvation = -51.435846 kcal Electronic energy + Delta-G solvation = -25919.220440 eV Core-core repulsion = 22086.122768 eV Total energy + Delta-G solvation = -3833.097673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.36890 -40.67926 -40.20895 -37.65091 -37.22992 -36.24455 -34.63032 -33.68911 -31.55842 -30.23149 -29.28268 -28.66455 -27.76478 -26.28328 -24.27354 -22.91663 -22.19540 -20.66261 -19.74082 -19.09181 -18.34654 -18.07644 -17.75875 -17.21818 -17.17774 -16.57132 -16.49565 -16.08320 -15.90081 -15.54129 -15.31107 -14.75256 -14.65345 -14.47778 -14.06845 -14.01369 -13.68100 -13.47474 -13.45305 -13.28258 -13.15347 -13.00788 -12.88238 -12.47309 -12.35942 -12.32275 -12.17388 -12.12245 -11.90423 -11.68419 -11.35540 -11.09729 -10.41634 -9.91475 -9.57981 -8.97621 -8.39296 -5.95211 0.31618 0.33744 1.41555 1.49451 1.57757 1.81641 1.93514 2.05667 2.25315 2.35777 2.61121 2.80075 3.00845 3.07425 3.49401 3.56140 3.62016 3.86034 3.89680 4.05114 4.10725 4.15891 4.32476 4.45510 4.46082 4.48167 4.58999 4.65942 4.70796 4.75691 4.80155 4.88872 4.90896 5.05960 5.15625 5.32143 5.39119 5.48952 5.49952 6.04003 6.08250 6.39854 6.42246 6.98891 7.12557 7.36269 7.91962 8.64237 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.023208 B = 0.003244 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.192036 B = 8630.289902 C = 9430.594625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.160 3.840 4 C -0.231 4.231 5 C -0.031 4.031 6 C -0.211 4.211 7 C 0.135 3.865 8 C -0.189 4.189 9 O -0.313 6.313 10 C 0.067 3.933 11 C -0.048 4.048 12 H 0.090 0.910 13 C -0.112 4.112 14 C 0.452 3.548 15 O -0.607 6.607 16 N -0.455 5.455 17 C -0.339 4.339 18 H 0.086 0.914 19 C 0.005 3.995 20 N -0.894 5.894 21 Si 0.985 3.015 22 H -0.281 1.281 23 H -0.261 1.261 24 H -0.282 1.282 25 C 0.220 3.780 26 C 0.258 3.742 27 N -0.506 5.506 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.274 0.726 39 H 0.133 0.867 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 -17.257 -3.788 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.114 3.886 4 C -0.249 4.249 5 C -0.049 4.049 6 C -0.212 4.212 7 C 0.089 3.911 8 C -0.208 4.208 9 O -0.227 6.227 10 C -0.008 4.008 11 C -0.067 4.067 12 H 0.108 0.892 13 C -0.152 4.152 14 C 0.243 3.757 15 O -0.492 6.492 16 N -0.175 5.175 17 C -0.467 4.467 18 H 0.104 0.896 19 C -0.197 4.197 20 N -0.533 5.533 21 Si 0.810 3.190 22 H -0.207 1.207 23 H -0.186 1.186 24 H -0.208 1.208 25 C 0.093 3.907 26 C -0.059 4.059 27 N -0.186 5.186 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.085 0.915 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.150 0.850 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.825 -16.642 -3.990 18.817 hybrid contribution 0.832 1.370 0.170 1.612 sum -6.993 -15.271 -3.820 17.225 Atomic orbital electron populations 1.23410 0.75922 1.05783 1.02573 1.86031 1.23789 1.26167 1.88281 1.18472 0.90969 0.85017 0.94181 1.21343 1.01308 0.90849 1.11420 1.20307 0.91849 0.98535 0.94203 1.20707 0.94974 0.93766 1.11755 1.19306 0.83575 0.93814 0.94411 1.19283 0.92081 0.95838 1.13630 1.86796 1.21066 1.32574 1.82246 1.23879 0.98507 0.77388 1.01008 1.20878 0.93200 0.95444 0.97205 0.89164 1.21533 0.99660 0.95558 0.98417 1.20820 0.84760 0.87026 0.83142 1.90512 1.55413 1.73128 1.30135 1.43797 1.40767 1.26427 1.06466 1.19611 1.16071 1.01663 1.09324 0.89619 1.25869 0.99304 0.98177 0.96348 1.69933 1.26882 1.35850 1.20596 0.85099 0.78827 0.77703 0.77365 1.20658 1.18572 1.20818 1.19054 0.82941 0.98763 0.89907 1.29654 0.93937 0.90866 0.91492 1.80811 1.16473 1.11583 1.09746 0.91399 0.86079 0.91517 0.82278 0.84219 0.84286 0.89456 0.87667 0.87495 0.89305 0.91611 0.84964 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.40 10.49 -92.30 -0.97 -7.37 16 3 C 0.16 3.57 6.67 22.45 0.15 3.72 16 4 C -0.23 -4.63 9.04 22.41 0.20 -4.43 16 5 C -0.03 -0.72 10.02 22.15 0.22 -0.50 16 6 C -0.21 -5.82 5.63 -19.49 -0.11 -5.93 16 7 C 0.13 3.83 7.04 22.69 0.16 3.99 16 8 C -0.19 -4.81 10.00 22.54 0.23 -4.58 16 9 O -0.31 -9.51 11.10 -95.09 -1.06 -10.57 16 10 C 0.07 2.01 7.00 72.57 0.51 2.52 16 11 C -0.05 -1.49 2.68 -10.65 -0.03 -1.52 16 12 H 0.09 2.96 7.97 -2.39 -0.02 2.94 16 13 C -0.11 -3.63 3.83 29.85 0.11 -3.52 16 14 C 0.45 19.24 7.08 87.66 0.62 19.86 16 15 O -0.61 -29.64 14.57 -3.07 -0.04 -29.69 16 16 N -0.45 -20.35 2.60 -645.41 -1.68 -22.03 16 17 C -0.34 -17.13 9.33 84.04 0.78 -16.34 16 18 H 0.09 4.64 7.38 -2.91 -0.02 4.62 16 19 C 0.01 0.24 4.88 84.93 0.41 0.66 16 20 N -0.89 -43.92 9.46 21.66 0.20 -43.71 16 21 Si 0.99 39.46 29.60 68.60 2.03 41.49 16 22 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 25 C 0.22 8.24 4.91 84.57 0.42 8.66 16 26 C 0.26 10.92 12.95 89.47 1.16 12.08 16 27 N -0.51 -23.24 18.52 19.98 0.37 -22.87 16 28 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 29 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.58 7.65 -2.38 -0.02 0.57 16 31 H 0.16 2.20 6.29 -2.91 -0.02 2.18 16 32 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.11 3.43 6.91 -2.39 -0.02 3.41 16 36 H 0.11 3.03 7.42 -2.38 -0.02 3.01 16 37 H 0.09 2.84 7.49 -2.39 -0.02 2.82 16 38 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 39 H 0.13 3.61 6.70 -2.39 -0.02 3.60 16 40 H 0.12 4.83 6.42 -2.38 -0.02 4.81 16 Total: -1.00 -65.25 341.13 5.89 -59.36 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 1.09 Total: 19.43 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.95 Total: 15.96 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.10 Total: -88.61 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -2.07 Total: -47.62 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -65.25 5.89 -59.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341119030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.920 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds