Wall clock time and date at job start Tue Mar 31 2020 10:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47231 * 2 1 4 4 C 1.47201 * 109.47354 * 239.99729 * 2 1 3 5 5 N 2.60798 * 109.47226 * 239.99763 * 2 1 3 6 6 C 1.50707 * 109.47121 * 119.99741 * 2 1 3 7 7 O 1.21288 * 119.99882 * 33.34612 * 6 2 1 8 8 N 1.34774 * 120.00151 * 213.34691 * 6 2 1 9 9 C 1.46494 * 120.00001 * 185.04910 * 8 6 2 10 10 C 1.50705 * 109.47117 * 90.00032 * 9 8 6 11 11 H 1.07994 * 119.99661 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99871 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00238 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99920 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46904 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47066 * 119.99828 * 14 12 10 17 17 H 1.48500 * 109.46875 * 239.99681 * 14 12 10 18 18 C 1.40108 * 119.99760 * 5.04976 * 8 6 2 19 19 C 1.38846 * 120.01637 * 269.64166 * 18 8 6 20 20 C 1.38129 * 120.04063 * 179.77372 * 19 18 8 21 21 C 1.38716 * 120.15423 * 0.54919 * 20 19 18 22 22 C 1.38986 * 119.93836 * 359.64234 * 21 20 19 23 23 C 1.38657 * 119.88420 * 0.11999 * 22 21 20 24 24 O 1.36117 * 120.78972 * 180.26861 * 22 21 20 25 25 C 1.43173 * 116.72546 * 342.80385 * 24 22 21 26 26 C 1.53466 * 108.24612 * 46.19072 * 25 24 22 27 27 O 1.36202 * 119.31540 * 179.55710 * 21 20 19 28 28 H 1.09001 * 109.47153 * 300.00723 * 1 2 3 29 29 H 1.09002 * 109.47429 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47439 * 60.00050 * 1 2 3 31 31 H 1.09004 * 109.47059 * 209.99790 * 9 8 6 32 32 H 1.08992 * 109.47362 * 329.99851 * 9 8 6 33 33 H 0.97004 * 120.00105 * 179.97438 * 13 12 10 34 34 H 1.08006 * 119.98219 * 0.05715 * 19 18 8 35 35 H 1.07993 * 119.92317 * 180.29587 * 20 19 18 36 36 H 1.08000 * 119.99269 * 179.97438 * 23 22 21 37 37 H 1.08995 * 109.70436 * 165.88278 * 25 24 22 38 38 H 1.09000 * 109.70733 * 286.50109 * 25 24 22 39 39 H 1.08997 * 109.71554 * 59.91799 * 26 25 24 40 40 H 1.09001 * 109.70879 * 180.55522 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2295 -2.1293 6 6 2.0323 -0.7104 1.2306 7 8 1.4071 -1.6425 1.6903 8 7 3.1762 -0.3099 1.8201 9 6 3.7228 -1.0675 2.9485 10 6 4.6570 -2.1320 2.4334 11 1 4.8261 -2.2342 1.3717 12 6 5.2948 -2.9760 3.3176 13 7 5.0884 -2.8518 4.6105 14 14 6.4521 -4.2960 2.6791 15 1 6.5112 -4.2277 1.1969 16 1 7.8098 -4.0774 3.2397 17 1 5.9550 -5.6327 3.0932 18 6 3.8424 0.8310 1.3538 19 6 4.8098 0.7147 0.3646 20 6 5.4636 1.8397 -0.0989 21 6 5.1645 3.0869 0.4298 22 6 4.1995 3.2060 1.4229 23 6 3.5400 2.0770 1.8843 24 8 3.8885 4.4218 1.9499 25 6 4.8287 5.4788 1.7294 26 6 5.2373 5.4575 0.2503 27 8 5.8261 4.1836 -0.0334 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 4.2689 -0.3932 3.6083 32 1 2.9080 -1.5354 3.5008 33 1 5.5369 -3.4459 5.2325 34 1 5.0480 -0.2554 -0.0460 35 1 6.2123 1.7477 -0.8717 36 1 2.7901 2.1675 2.6562 37 1 4.3678 6.4368 1.9698 38 1 5.7075 5.3256 2.3558 39 1 4.3576 5.6037 -0.3764 40 1 5.9622 6.2485 0.0577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345798006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:36 Heat of formation + Delta-G solvation = -64.977315 kcal Electronic energy + Delta-G solvation = -26549.521773 eV Core-core repulsion = 22715.836898 eV Total energy + Delta-G solvation = -3833.684875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.32170 -41.36315 -38.95264 -38.20246 -37.81643 -36.29201 -34.79403 -34.00395 -31.95657 -31.34445 -29.72927 -28.75268 -26.47190 -25.62399 -24.60077 -24.01507 -22.48850 -21.00145 -19.86298 -19.15289 -18.73266 -18.37304 -18.11266 -17.69271 -17.13201 -16.36821 -16.19555 -15.93450 -15.78674 -15.47324 -15.33358 -15.13181 -14.87350 -14.84168 -14.45477 -14.31863 -13.99983 -13.90712 -13.60856 -13.37654 -13.12765 -13.03230 -12.85277 -12.81359 -12.66205 -12.46847 -12.24936 -12.06579 -11.92016 -11.77528 -11.45238 -10.92210 -10.66072 -9.82486 -9.67219 -9.05373 -8.25816 -6.38106 0.08860 0.22775 1.12345 1.33993 1.36355 1.47457 1.57667 1.65820 1.95550 2.13037 2.34875 2.43266 2.57082 2.86704 3.05784 3.30341 3.41685 3.69729 3.90512 4.03471 4.04107 4.09253 4.14982 4.24649 4.39554 4.58019 4.66462 4.75364 4.81546 4.83075 4.89291 5.01835 5.05302 5.16749 5.26044 5.34801 5.47782 5.51762 5.74903 5.90683 6.00828 6.31455 6.39236 6.55632 6.68753 7.11810 7.32756 8.82466 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.005135 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.733843 B = 5451.714150 C = 6674.941285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.004 4.004 3 H 0.157 0.843 4 C 0.236 3.764 5 N -0.452 5.452 6 C 0.520 3.480 7 O -0.556 6.556 8 N -0.554 5.554 9 C 0.264 3.736 10 C -0.540 4.540 11 H 0.050 0.950 12 C 0.016 3.984 13 N -0.922 5.922 14 Si 0.958 3.042 15 H -0.273 1.273 16 H -0.269 1.269 17 H -0.279 1.279 18 C 0.127 3.873 19 C -0.109 4.109 20 C -0.103 4.103 21 C 0.056 3.944 22 C 0.062 3.938 23 C -0.111 4.111 24 O -0.316 6.316 25 C 0.012 3.988 26 C 0.014 3.986 27 O -0.318 6.318 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.025 0.975 32 H 0.019 0.981 33 H 0.268 0.732 34 H 0.117 0.883 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.158 0.842 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 22.117 -8.419 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 H 0.174 0.826 4 C -0.082 4.082 5 N -0.129 5.129 6 C 0.306 3.694 7 O -0.434 6.434 8 N -0.282 5.282 9 C 0.145 3.855 10 C -0.579 4.579 11 H 0.068 0.932 12 C -0.184 4.184 13 N -0.562 5.562 14 Si 0.783 3.217 15 H -0.197 1.197 16 H -0.194 1.194 17 H -0.205 1.205 18 C 0.037 3.963 19 C -0.128 4.128 20 C -0.122 4.122 21 C 0.011 3.989 22 C 0.016 3.984 23 C -0.131 4.131 24 O -0.230 6.230 25 C -0.062 4.062 26 C -0.060 4.060 27 O -0.233 6.233 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.176 0.824 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.296 20.798 -9.361 22.923 hybrid contribution 0.773 -0.940 0.616 1.364 sum -1.523 19.858 -8.745 21.752 Atomic orbital electron populations 1.21755 0.86927 1.04257 1.05835 1.19119 1.00937 0.99994 0.82821 0.82587 1.28592 0.92601 0.93092 0.93882 1.81167 1.09321 1.09243 1.13166 1.20549 0.80172 0.83586 0.85054 1.90694 1.57104 1.30015 1.65551 1.45700 1.22669 1.25847 1.33991 1.18935 0.93004 0.90181 0.83382 1.21626 1.26464 1.16632 0.93171 0.93157 1.25691 0.98322 0.99401 0.94956 1.70027 1.44139 1.39673 1.02333 0.85510 0.78896 0.78865 0.78448 1.19712 1.19414 1.20486 1.17296 0.96576 0.85579 0.96877 1.21175 0.95838 0.98625 0.97212 1.20395 1.01742 0.88632 1.01432 1.18885 0.96190 0.88613 0.95257 1.18498 0.98345 0.86522 0.94987 1.20558 1.02808 0.88470 1.01263 1.86300 1.46888 1.16367 1.73484 1.24019 0.94135 0.91278 0.96784 1.24022 1.02150 0.83792 0.96081 1.86326 1.48613 1.13710 1.74641 0.88588 0.92211 0.87603 0.95648 0.96331 0.92297 0.86540 0.82945 0.83672 0.82425 0.90548 0.89418 0.82757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.79 71.98 0.63 -2.09 16 2 C 0.00 -0.12 2.63 -13.35 -0.04 -0.16 16 3 H 0.16 3.43 6.58 -2.39 -0.02 3.42 16 4 C 0.24 7.67 14.63 89.44 1.31 8.97 16 5 N -0.45 -16.48 18.54 20.01 0.37 -16.11 16 6 C 0.52 20.62 6.61 87.66 0.58 21.20 16 7 O -0.56 -26.73 15.79 -3.05 -0.05 -26.78 16 8 N -0.55 -23.19 2.49 -635.27 -1.58 -24.77 16 9 C 0.26 13.92 5.19 85.64 0.44 14.36 16 10 C -0.54 -30.84 9.39 25.60 0.24 -30.60 16 11 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 12 C 0.02 0.92 5.46 84.65 0.46 1.38 16 13 N -0.92 -54.97 13.29 21.45 0.28 -54.69 16 14 Si 0.96 45.41 29.54 68.60 2.03 47.43 16 15 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 18 C 0.13 4.38 3.41 38.09 0.13 4.51 16 19 C -0.11 -3.60 9.96 22.39 0.22 -3.37 16 20 C -0.10 -2.81 9.95 22.36 0.22 -2.59 16 21 C 0.06 1.42 6.49 22.56 0.15 1.56 16 22 C 0.06 1.61 6.49 22.55 0.15 1.75 16 23 C -0.11 -3.24 9.60 22.49 0.22 -3.02 16 24 O -0.32 -6.77 10.42 -82.66 -0.86 -7.63 16 25 C 0.01 0.15 7.26 72.14 0.52 0.68 16 26 C 0.01 0.16 7.26 72.14 0.52 0.68 16 27 O -0.32 -6.67 10.42 -83.63 -0.87 -7.55 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.50 7.85 -2.39 -0.02 1.48 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 1.38 8.05 -2.38 -0.02 1.36 16 32 H 0.02 1.10 7.36 -2.39 -0.02 1.08 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 36 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -76.21 353.91 6.16 -70.05 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.07 Total: 6.78 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.76 Total: 13.26 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -0.92 Total: -95.57 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.78 Total: -41.95 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -76.21 6.16 -70.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345798006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.073 kcal (2) G-P(sol) polarization free energy of solvation -76.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds