Wall clock time and date at job start Tue Mar 31 2020 10:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46785 * 2 1 4 4 C 1.47195 * 109.46974 * 120.00280 * 2 1 3 5 5 N 2.60791 * 109.46827 * 120.00184 * 2 1 3 6 6 C 1.50699 * 109.47130 * 240.00235 * 2 1 3 7 7 O 1.21298 * 119.99781 * 324.62409 * 6 2 1 8 8 N 1.34778 * 120.00183 * 144.61934 * 6 2 1 9 9 C 1.46502 * 119.99952 * 184.33203 * 8 6 2 10 10 C 1.50696 * 109.46840 * 90.00191 * 9 8 6 11 11 H 1.08004 * 120.00182 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99894 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00116 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00086 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47268 * 89.99709 * 14 12 10 16 16 H 1.48503 * 109.47519 * 210.00154 * 14 12 10 17 17 H 1.48505 * 109.47203 * 330.00085 * 14 12 10 18 18 C 1.40099 * 119.99372 * 4.33517 * 8 6 2 19 19 C 1.38844 * 120.01767 * 267.37668 * 18 8 6 20 20 C 1.38131 * 120.03530 * 179.78002 * 19 18 8 21 21 C 1.38705 * 120.16234 * 0.54267 * 20 19 18 22 22 C 1.39001 * 119.93421 * 359.65160 * 21 20 19 23 23 C 1.38648 * 119.88096 * 0.11371 * 22 21 20 24 24 O 1.36116 * 120.78344 * 180.26571 * 22 21 20 25 25 C 1.43167 * 116.73204 * 342.80059 * 24 22 21 26 26 C 1.53464 * 108.24758 * 46.18862 * 25 24 22 27 27 O 1.36204 * 119.31929 * 179.55876 * 21 20 19 28 28 H 1.09007 * 109.46793 * 59.99964 * 1 2 3 29 29 H 1.08995 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47187 * 299.99932 * 1 2 3 31 31 H 1.09001 * 109.46876 * 210.00364 * 9 8 6 32 32 H 1.08996 * 109.47139 * 330.00283 * 9 8 6 33 33 H 0.97001 * 119.99678 * 180.02562 * 13 12 10 34 34 H 1.07998 * 119.98068 * 0.05663 * 19 18 8 35 35 H 1.08001 * 119.91841 * 180.28605 * 20 19 18 36 36 H 1.08006 * 119.98726 * 179.97438 * 23 22 21 37 37 H 1.09004 * 109.70690 * 165.88197 * 25 24 22 38 38 H 1.09007 * 109.70381 * 286.50277 * 25 24 22 39 39 H 1.09003 * 109.71271 * 59.92136 * 26 25 24 40 40 H 1.08996 * 109.71259 * 180.55120 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3993 -1.2295 2.1294 6 6 2.0324 -0.7104 -1.2305 7 8 1.4270 -1.6657 -1.6689 8 7 3.1543 -0.2841 -1.8439 9 6 3.5906 -0.9137 -3.0927 10 6 2.9771 -0.1878 -4.2622 11 1 2.3275 0.6581 -4.0923 12 6 3.2459 -0.6030 -5.5492 13 7 2.7109 0.0308 -6.5699 14 14 4.3700 -2.0656 -5.8432 15 1 3.5629 -3.3117 -5.8749 16 1 5.0721 -1.8975 -7.1409 17 1 5.3687 -2.1506 -4.7474 18 6 3.9031 0.7609 -1.2872 19 6 3.6652 2.0714 -1.6792 20 6 4.4002 3.1025 -1.1272 21 6 5.3850 2.8317 -0.1887 22 6 5.6282 1.5203 0.2029 23 6 4.8869 0.4862 -0.3479 24 8 6.5866 1.2354 1.1264 25 6 7.5594 2.2546 1.3804 26 6 6.8233 3.5908 1.5470 27 8 6.1055 3.8606 0.3379 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.6772 -0.8646 -3.1640 32 1 3.2724 -1.9561 -3.1046 33 1 2.8998 -0.2615 -7.4753 34 1 2.9021 2.2852 -2.4129 35 1 4.2104 4.1216 -1.4302 36 1 5.0747 -0.5334 -0.0452 37 1 8.1075 2.0205 2.2931 38 1 8.2522 2.3188 0.5412 39 1 6.1254 3.5245 2.3817 40 1 7.5441 4.3871 1.7321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345798008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:40 Heat of formation + Delta-G solvation = -39.393980 kcal Electronic energy + Delta-G solvation = -26610.726176 eV Core-core repulsion = 22778.150678 eV Total energy + Delta-G solvation = -3832.575498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.33373 -40.04235 -37.76087 -37.30807 -36.53074 -34.82515 -33.07551 -32.46835 -31.04351 -30.29493 -28.61590 -27.61383 -25.17248 -24.68057 -22.95658 -22.45115 -21.40779 -19.67688 -18.76782 -18.02215 -17.45483 -17.14366 -16.89130 -16.49035 -15.69698 -15.33997 -15.09268 -14.63122 -14.48190 -14.29269 -14.11770 -13.84969 -13.81115 -13.65218 -13.27894 -12.84604 -12.78528 -12.57697 -12.40929 -12.06052 -11.90230 -11.80072 -11.70408 -11.42113 -11.26193 -11.15761 -10.95451 -10.60228 -10.58738 -10.26325 -9.65960 -9.44162 -8.65856 -8.58114 -8.16822 -7.96230 -6.15338 -4.15067 1.22322 1.34917 2.52554 2.77347 2.87893 2.94579 3.06068 3.26561 3.32304 3.35031 3.57137 3.68912 4.05334 4.09986 4.34721 4.56290 4.59286 4.64786 4.69028 4.95621 5.02858 5.11094 5.18710 5.23265 5.27976 5.35837 5.50064 5.67008 5.79419 5.83528 6.00496 6.13671 6.19139 6.46684 6.60420 6.69164 6.77976 6.83236 7.06851 7.34568 7.49468 7.51571 7.96623 8.34478 8.58965 8.85514 9.43992 10.97274 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.005380 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.506703 B = 5202.803707 C = 6625.047482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 H 0.129 0.871 4 C 0.222 3.778 5 N -0.422 5.422 6 C 0.529 3.471 7 O -0.510 6.510 8 N -0.548 5.548 9 C 0.216 3.784 10 C -0.531 4.531 11 H 0.080 0.920 12 C 0.077 3.923 13 N -0.893 5.893 14 Si 0.870 3.130 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.266 1.266 18 C 0.146 3.854 19 C -0.093 4.093 20 C -0.105 4.105 21 C 0.048 3.952 22 C 0.055 3.945 23 C -0.115 4.115 24 O -0.307 6.307 25 C 0.020 3.980 26 C 0.021 3.979 27 O -0.307 6.307 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.266 0.734 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.619 8.999 15.628 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 H 0.147 0.853 4 C -0.096 4.096 5 N -0.099 5.099 6 C 0.313 3.687 7 O -0.384 6.384 8 N -0.276 5.276 9 C 0.098 3.902 10 C -0.569 4.569 11 H 0.098 0.902 12 C -0.126 4.126 13 N -0.531 5.531 14 Si 0.697 3.303 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.190 1.190 18 C 0.054 3.946 19 C -0.112 4.112 20 C -0.124 4.124 21 C 0.003 3.997 22 C 0.009 3.991 23 C -0.135 4.135 24 O -0.222 6.222 25 C -0.055 4.055 26 C -0.055 4.055 27 O -0.221 6.221 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.900 7.646 16.581 19.188 hybrid contribution 0.862 -0.371 -0.649 1.141 sum 6.761 7.274 15.932 18.773 Atomic orbital electron populations 1.21672 0.89247 1.04607 1.03580 1.19043 0.99365 0.99862 0.86002 0.85296 1.28396 0.93449 0.93754 0.94029 1.81166 1.08433 1.08732 1.11520 1.19727 0.80739 0.84295 0.83923 1.90728 1.55593 1.26619 1.65455 1.45532 1.23161 1.33677 1.25275 1.19891 0.95598 0.94648 0.80087 1.21219 1.30360 1.16416 0.88927 0.90226 1.24781 0.95532 0.96382 0.95874 1.69874 1.43854 1.40565 0.98769 0.86936 0.81499 0.83746 0.78106 1.19757 1.20947 1.19035 1.17222 0.94219 0.88195 0.94940 1.21425 1.00246 0.90656 0.98895 1.20362 0.94132 1.00520 0.97401 1.18923 0.95994 0.85477 0.99313 1.18555 0.93491 0.91885 0.95125 1.20612 0.96806 0.98449 0.97624 1.86321 1.38396 1.41328 1.56141 1.23613 0.90419 0.87703 1.03793 1.23595 0.96598 0.98771 0.86515 1.86334 1.61470 1.34603 1.39738 0.89742 0.90482 0.91144 0.94711 0.93744 0.92438 0.83356 0.84211 0.84886 0.86291 0.90447 0.90590 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.81 37.16 0.33 -1.22 16 2 C -0.02 -0.25 2.58 -94.56 -0.24 -0.49 16 3 H 0.13 1.53 6.51 -51.93 -0.34 1.19 16 4 C 0.22 3.40 14.63 -20.76 -0.30 3.10 16 5 N -0.42 -7.15 18.54 42.15 0.78 -6.36 16 6 C 0.53 9.95 6.59 -10.99 -0.07 9.87 16 7 O -0.51 -11.40 15.84 5.54 0.09 -11.31 16 8 N -0.55 -10.71 2.49 -114.73 -0.29 -10.99 16 9 C 0.22 5.04 4.26 -5.19 -0.02 5.02 16 10 C -0.53 -14.17 9.94 -34.44 -0.34 -14.51 16 11 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 12 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 13 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 14 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 18 C 0.15 2.43 3.53 -83.66 -0.30 2.13 16 19 C -0.09 -1.40 9.47 -39.40 -0.37 -1.77 16 20 C -0.10 -1.39 9.95 -39.45 -0.39 -1.78 16 21 C 0.05 0.65 6.49 -39.13 -0.25 0.40 16 22 C 0.05 0.80 6.49 -39.15 -0.25 0.54 16 23 C -0.11 -1.82 9.88 -39.24 -0.39 -2.21 16 24 O -0.31 -4.11 10.42 -32.89 -0.34 -4.45 16 25 C 0.02 0.18 7.26 37.40 0.27 0.45 16 26 C 0.02 0.17 7.26 37.40 0.27 0.44 16 27 O -0.31 -3.68 10.42 -33.17 -0.35 -4.03 16 28 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.80 7.11 -51.93 -0.37 0.43 16 32 H 0.04 1.10 6.79 -51.93 -0.35 0.74 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 37 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -33.46 350.15 -5.75 -39.22 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.86 Total: -0.15 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.17 Total: 2.03 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 1.27 Total: -42.80 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.60 Total: -19.79 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.46 -5.75 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345798008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.176 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds