Wall clock time and date at job start Tue Mar 31 2020 11:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99960 * 2 1 4 4 C 1.38795 * 120.08006 * 0.02562 * 3 2 1 5 5 C 1.38008 * 119.92099 * 179.80582 * 4 3 2 6 6 C 1.38556 * 120.39510 * 359.92018 * 5 4 3 7 7 C 1.38420 * 119.91217 * 359.94876 * 6 5 4 8 8 C 1.38460 * 120.07720 * 179.72439 * 3 2 1 9 9 O 1.35860 * 121.79827 * 180.32359 * 7 6 5 10 10 C 1.42816 * 117.86146 * 342.76458 * 9 7 6 11 11 C 1.53412 * 108.37225 * 49.20828 * 10 9 7 12 12 H 1.08994 * 109.73088 * 54.97988 * 11 10 9 13 13 C 1.50693 * 109.69950 * 175.55967 * 11 10 9 14 14 O 1.21295 * 120.00356 * 89.34079 * 13 11 10 15 15 N 1.34777 * 119.99978 * 269.33915 * 13 11 10 16 16 C 1.37097 * 120.00098 * 184.30908 * 15 13 11 17 17 H 1.08000 * 120.00090 * 14.98376 * 16 15 13 18 18 C 1.38948 * 120.00097 * 194.98142 * 16 15 13 19 19 N 1.31411 * 120.00073 * 18.01732 * 18 16 15 20 20 Si 1.86800 * 120.00221 * 198.01729 * 18 16 15 21 21 H 1.48498 * 109.47610 * 94.97662 * 20 18 16 22 22 H 1.48506 * 109.47254 * 214.98146 * 20 18 16 23 23 H 1.48508 * 109.46756 * 334.97464 * 20 18 16 24 24 C 1.46504 * 120.00035 * 4.31041 * 15 13 11 25 25 C 1.47201 * 109.46801 * 83.63087 * 24 15 13 26 26 N 8.86273 * 152.70200 * 14.08515 * 2 1 3 27 27 C 1.50784 * 118.70046 * 179.79437 * 6 5 4 28 28 H 1.08994 * 109.47244 * 59.99886 * 1 2 3 29 29 H 1.08998 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46833 * 299.99747 * 1 2 3 31 31 H 1.07995 * 120.03737 * 359.83079 * 4 3 2 32 32 H 1.08000 * 119.79575 * 179.97438 * 5 4 3 33 33 H 1.07995 * 119.90987 * 0.30406 * 8 3 2 34 34 H 1.08992 * 109.69122 * 289.48536 * 10 9 7 35 35 H 1.09001 * 109.71730 * 168.93934 * 10 9 7 36 36 H 0.97006 * 120.00392 * 180.02562 * 19 18 16 37 37 H 1.09000 * 109.46800 * 203.63062 * 24 15 13 38 38 H 1.09000 * 109.46615 * 323.63353 * 24 15 13 39 39 H 1.09010 * 109.43634 * 282.40759 * 27 6 5 40 40 H 1.08997 * 109.43821 * 42.27327 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2916 2.3760 0.0005 5 6 1.9216 3.6039 0.0046 6 6 3.3049 3.6821 0.0098 7 6 4.0618 2.5232 0.0120 8 6 3.4286 1.2852 0.0058 9 8 5.4200 2.5551 0.0236 10 6 6.0619 3.7778 -0.3406 11 6 5.4131 4.9196 0.4524 12 1 5.4558 4.6976 1.5187 13 6 6.1401 6.2095 0.1726 14 8 5.7924 6.9135 -0.7519 15 7 7.1767 6.5811 0.9497 16 6 7.7817 7.7953 0.7511 17 1 7.2939 8.5500 0.1520 18 6 9.0222 8.0548 1.3206 19 7 9.7739 7.0615 1.7391 20 14 9.6216 9.8158 1.4913 21 1 9.2884 10.3230 2.8466 22 1 11.0929 9.8592 1.2944 23 1 8.9600 10.6651 0.4684 24 6 7.6572 5.6875 2.0066 25 6 8.5873 4.7024 1.4310 26 7 9.3047 3.9424 0.9892 27 6 3.9532 5.0434 0.0094 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2131 2.3216 -0.0018 32 1 1.3327 4.5092 0.0046 33 1 4.0165 0.3794 0.0053 34 1 5.9359 3.9547 -1.4087 35 1 7.1237 3.7213 -0.1007 36 1 10.6398 7.2427 2.1371 37 1 8.1723 6.2712 2.7695 38 1 6.8106 5.1685 2.4561 39 1 3.9137 5.4637 -0.9957 40 1 3.4198 5.6994 0.6973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362880033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:55 Heat of formation + Delta-G solvation = -39.340718 kcal Electronic energy + Delta-G solvation = -26201.017255 eV Core-core repulsion = 22368.444067 eV Total energy + Delta-G solvation = -3832.573189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88653 -39.59775 -38.61530 -36.47854 -35.98449 -34.60197 -33.63236 -31.92177 -30.48152 -30.07220 -27.65936 -27.43020 -25.42851 -25.30705 -23.35563 -22.63891 -20.56082 -18.90702 -18.55365 -17.97905 -17.09934 -16.72774 -16.45354 -16.03713 -15.89530 -15.37155 -15.12032 -14.78898 -14.50588 -14.15405 -13.82803 -13.51675 -13.33791 -13.21181 -13.16496 -12.85195 -12.69190 -12.47859 -12.07440 -11.95130 -11.67900 -11.54618 -11.32125 -11.24730 -11.08591 -10.92827 -10.59403 -10.49722 -10.44451 -10.32322 -10.22072 -9.37051 -8.72262 -8.46323 -8.17904 -7.93905 -6.58236 -4.09834 1.35652 1.40150 2.87826 3.02549 3.17200 3.21529 3.38952 3.59407 3.64546 3.77790 3.88949 4.03499 4.54121 4.71262 4.77871 4.83546 4.89074 4.93109 4.94801 4.98510 5.12822 5.17717 5.21895 5.25914 5.37989 5.53366 5.62935 5.73367 5.80364 5.90032 6.03072 6.14937 6.21787 6.25742 6.36423 6.45985 6.54959 6.56682 7.25824 7.37697 7.52373 7.76550 8.17324 8.61161 8.88508 9.08148 9.59852 10.46243 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.003237 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.150899 B = 8649.221507 C = 9322.029913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.151 3.849 4 C -0.240 4.240 5 C -0.045 4.045 6 C -0.184 4.184 7 C 0.172 3.828 8 C -0.185 4.185 9 O -0.307 6.307 10 C 0.074 3.926 11 C -0.143 4.143 12 H 0.098 0.902 13 C 0.459 3.541 14 O -0.568 6.568 15 N -0.438 5.438 16 C -0.310 4.310 17 H 0.111 0.889 18 C 0.031 3.969 19 N -0.881 5.881 20 Si 0.932 3.068 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.211 3.789 25 C 0.245 3.755 26 N -0.468 5.468 27 C -0.056 4.056 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.275 0.725 37 H 0.141 0.859 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.737 -8.284 1.975 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.106 3.894 4 C -0.259 4.259 5 C -0.063 4.063 6 C -0.185 4.185 7 C 0.126 3.874 8 C -0.205 4.205 9 O -0.220 6.220 10 C -0.002 4.002 11 C -0.165 4.165 12 H 0.116 0.884 13 C 0.247 3.753 14 O -0.451 6.451 15 N -0.157 5.157 16 C -0.437 4.437 17 H 0.129 0.871 18 C -0.172 4.172 19 N -0.520 5.520 20 Si 0.759 3.241 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.193 1.193 24 C 0.084 3.916 25 C -0.073 4.073 26 N -0.148 5.148 27 C -0.094 4.094 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.422 -9.377 0.994 17.231 hybrid contribution 0.071 1.425 0.346 1.468 sum -14.351 -7.952 1.341 16.462 Atomic orbital electron populations 1.23037 0.78407 1.03734 1.01426 1.86045 1.21309 1.26952 1.88769 1.18489 0.91363 0.84081 0.95501 1.21038 0.99799 0.92128 1.12899 1.20654 0.92991 0.97201 0.95468 1.19888 0.94172 0.94717 1.09751 1.18333 0.82842 0.92330 0.93942 1.19561 0.91405 0.96860 1.12629 1.86028 1.15894 1.36823 1.83293 1.23023 0.97144 0.80813 0.99195 1.21935 0.96701 0.95803 1.02065 0.88402 1.19616 0.84529 0.87215 0.83969 1.90551 1.68567 1.55252 1.30681 1.43680 1.27934 1.16034 1.28065 1.19822 1.01563 0.89655 1.32696 0.87140 1.25308 0.94999 0.99871 0.97063 1.69853 1.11093 1.30801 1.40255 0.85802 0.77821 0.81623 0.78899 1.20114 1.20981 1.19252 1.18980 0.92662 0.88150 0.91824 1.29297 0.93142 0.91581 0.93285 1.80896 1.10749 1.14561 1.08603 1.20291 0.92627 0.92527 1.03930 0.92636 0.88389 0.92616 0.85522 0.85378 0.84562 0.90921 0.87028 0.91451 0.84183 0.89858 0.88913 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.66 10.50 -19.42 -0.20 -3.86 16 3 C 0.15 1.93 6.68 -39.29 -0.26 1.67 16 4 C -0.24 -2.72 9.04 -39.46 -0.36 -3.08 16 5 C -0.04 -0.55 9.66 -39.55 -0.38 -0.93 16 6 C -0.18 -2.67 5.75 -104.40 -0.60 -3.27 16 7 C 0.17 2.67 6.47 -39.21 -0.25 2.42 16 8 C -0.19 -2.66 9.87 -39.20 -0.39 -3.04 16 9 O -0.31 -5.22 10.27 -19.30 -0.20 -5.42 16 10 C 0.07 1.30 6.26 37.37 0.23 1.53 16 11 C -0.14 -2.47 2.09 -91.53 -0.19 -2.66 16 12 H 0.10 1.52 6.02 -51.93 -0.31 1.21 16 13 C 0.46 9.89 6.63 -10.99 -0.07 9.82 16 14 O -0.57 -14.09 15.59 5.54 0.09 -14.01 16 15 N -0.44 -9.80 2.61 -117.93 -0.31 -10.11 16 16 C -0.31 -7.68 9.38 -14.93 -0.14 -7.82 16 17 H 0.11 2.89 7.36 -52.49 -0.39 2.50 16 18 C 0.03 0.73 4.99 -17.47 -0.09 0.65 16 19 N -0.88 -21.30 9.24 55.50 0.51 -20.79 16 20 Si 0.93 19.06 29.59 -169.99 -5.03 14.03 16 21 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 24 C 0.21 4.10 4.92 -6.83 -0.03 4.06 16 25 C 0.24 5.25 11.67 -20.80 -0.24 5.01 16 26 N -0.47 -10.76 18.09 42.10 0.76 -10.00 16 27 C -0.06 -0.87 4.99 -27.81 -0.14 -1.01 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 31 H 0.13 1.09 6.31 -52.49 -0.33 0.76 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.11 2.14 5.30 -51.93 -0.28 1.86 16 36 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 37 H 0.14 2.80 6.09 -51.93 -0.32 2.49 16 38 H 0.08 1.27 6.00 -51.93 -0.31 0.96 16 39 H 0.09 1.55 7.42 -51.92 -0.39 1.17 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -29.82 334.08 -5.63 -35.45 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.36 Total: 5.13 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.92 Total: 4.54 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.97 Total: -40.90 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.32 Total: -23.29 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.82 -5.63 -35.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362880033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.893 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds