Wall clock time and date at job start Tue Mar 31 2020 11:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99960 * 2 1 4 4 C 1.38795 * 120.08006 * 0.02562 * 3 2 1 5 5 C 1.38008 * 119.92099 * 179.80582 * 4 3 2 6 6 C 1.38556 * 120.39510 * 359.92018 * 5 4 3 7 7 C 1.38420 * 119.91217 * 359.94876 * 6 5 4 8 8 C 1.38460 * 120.07720 * 179.72439 * 3 2 1 9 9 O 1.35860 * 121.79827 * 180.32359 * 7 6 5 10 10 C 1.42816 * 117.86146 * 342.76458 * 9 7 6 11 11 C 1.53412 * 108.37225 * 49.20828 * 10 9 7 12 12 H 1.08994 * 109.73088 * 54.97988 * 11 10 9 13 13 C 1.50693 * 109.69950 * 175.55967 * 11 10 9 14 14 O 1.21295 * 120.00356 * 89.34079 * 13 11 10 15 15 N 1.34777 * 119.99978 * 269.33915 * 13 11 10 16 16 C 1.37097 * 120.00098 * 184.30908 * 15 13 11 17 17 H 1.08000 * 120.00090 * 14.98376 * 16 15 13 18 18 C 1.38948 * 120.00097 * 194.98142 * 16 15 13 19 19 N 1.31411 * 120.00073 * 18.01732 * 18 16 15 20 20 Si 1.86800 * 120.00221 * 198.01729 * 18 16 15 21 21 H 1.48498 * 109.47610 * 94.97662 * 20 18 16 22 22 H 1.48506 * 109.47254 * 214.98146 * 20 18 16 23 23 H 1.48508 * 109.46756 * 334.97464 * 20 18 16 24 24 C 1.46504 * 120.00035 * 4.31041 * 15 13 11 25 25 C 1.47201 * 109.46801 * 83.63087 * 24 15 13 26 26 N 8.86273 * 152.70200 * 14.08515 * 2 1 3 27 27 C 1.50784 * 118.70046 * 179.79437 * 6 5 4 28 28 H 1.08994 * 109.47244 * 59.99886 * 1 2 3 29 29 H 1.08998 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46833 * 299.99747 * 1 2 3 31 31 H 1.07995 * 120.03737 * 359.83079 * 4 3 2 32 32 H 1.08000 * 119.79575 * 179.97438 * 5 4 3 33 33 H 1.07995 * 119.90987 * 0.30406 * 8 3 2 34 34 H 1.08992 * 109.69122 * 289.48536 * 10 9 7 35 35 H 1.09001 * 109.71730 * 168.93934 * 10 9 7 36 36 H 0.97006 * 120.00392 * 180.02562 * 19 18 16 37 37 H 1.09000 * 109.46800 * 203.63062 * 24 15 13 38 38 H 1.09000 * 109.46615 * 323.63353 * 24 15 13 39 39 H 1.09010 * 109.43634 * 282.40759 * 27 6 5 40 40 H 1.08997 * 109.43821 * 42.27327 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2916 2.3760 0.0005 5 6 1.9216 3.6039 0.0046 6 6 3.3049 3.6821 0.0098 7 6 4.0618 2.5232 0.0120 8 6 3.4286 1.2852 0.0058 9 8 5.4200 2.5551 0.0236 10 6 6.0619 3.7778 -0.3406 11 6 5.4131 4.9196 0.4524 12 1 5.4558 4.6976 1.5187 13 6 6.1401 6.2095 0.1726 14 8 5.7924 6.9135 -0.7519 15 7 7.1767 6.5811 0.9497 16 6 7.7817 7.7953 0.7511 17 1 7.2939 8.5500 0.1520 18 6 9.0222 8.0548 1.3206 19 7 9.7739 7.0615 1.7391 20 14 9.6216 9.8158 1.4913 21 1 9.2884 10.3230 2.8466 22 1 11.0929 9.8592 1.2944 23 1 8.9600 10.6651 0.4684 24 6 7.6572 5.6875 2.0066 25 6 8.5873 4.7024 1.4310 26 7 9.3047 3.9424 0.9892 27 6 3.9532 5.0434 0.0094 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2131 2.3216 -0.0018 32 1 1.3327 4.5092 0.0046 33 1 4.0165 0.3794 0.0053 34 1 5.9359 3.9547 -1.4087 35 1 7.1237 3.7213 -0.1007 36 1 10.6398 7.2427 2.1371 37 1 8.1723 6.2712 2.7695 38 1 6.8106 5.1685 2.4561 39 1 3.9137 5.4637 -0.9957 40 1 3.4198 5.6994 0.6973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362880033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:54 Heat of formation + Delta-G solvation = -57.122717 kcal Electronic energy + Delta-G solvation = -26201.788341 eV Core-core repulsion = 22368.444067 eV Total energy + Delta-G solvation = -3833.344274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.09545 -40.81360 -39.97140 -37.75859 -37.49164 -36.34778 -35.01821 -33.69403 -31.50787 -31.22138 -29.26942 -28.23979 -26.96818 -26.63762 -24.69686 -23.67792 -21.85096 -20.39889 -19.75746 -19.54687 -18.60407 -18.04593 -17.86056 -17.22260 -16.82981 -16.62705 -16.31039 -16.17984 -15.97017 -15.50031 -15.25208 -14.93379 -14.81013 -14.53190 -14.30305 -14.25392 -14.04440 -13.72587 -13.44469 -13.25722 -13.16671 -12.95191 -12.80594 -12.49357 -12.41646 -12.30235 -12.13105 -12.09682 -11.74881 -11.54522 -11.48764 -11.15312 -10.47606 -9.99165 -9.52020 -8.97231 -8.40906 -5.99319 0.35255 0.36915 1.36430 1.48988 1.59003 1.69859 1.88933 1.95372 2.19434 2.32813 2.61923 2.72407 2.95343 3.01533 3.41536 3.55862 3.67217 3.77207 3.79632 3.99463 4.03748 4.15318 4.19268 4.35823 4.41618 4.44777 4.47091 4.56200 4.65035 4.78298 4.85704 4.92121 4.97456 5.07542 5.19369 5.29793 5.46122 5.47531 5.53743 5.96503 6.29225 6.35324 6.46132 6.90617 7.06739 7.29023 7.83385 8.61174 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.003237 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.150899 B = 8649.221507 C = 9322.029913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.152 3.848 4 C -0.228 4.228 5 C -0.040 4.040 6 C -0.195 4.195 7 C 0.146 3.854 8 C -0.202 4.202 9 O -0.317 6.317 10 C 0.082 3.918 11 C -0.133 4.133 12 H 0.119 0.881 13 C 0.458 3.542 14 O -0.606 6.606 15 N -0.448 5.448 16 C -0.337 4.337 17 H 0.088 0.912 18 C 0.005 3.995 19 N -0.894 5.894 20 Si 0.991 3.009 21 H -0.259 1.259 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.212 3.788 25 C 0.255 3.745 26 N -0.500 5.500 27 C -0.049 4.049 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.132 0.868 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.276 0.724 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.075 0.925 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.210 -8.591 3.111 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.106 3.894 4 C -0.246 4.246 5 C -0.058 4.058 6 C -0.196 4.196 7 C 0.101 3.899 8 C -0.221 4.221 9 O -0.231 6.231 10 C 0.006 3.994 11 C -0.154 4.154 12 H 0.137 0.863 13 C 0.247 3.753 14 O -0.491 6.491 15 N -0.167 5.167 16 C -0.464 4.464 17 H 0.106 0.894 18 C -0.197 4.197 19 N -0.533 5.533 20 Si 0.815 3.185 21 H -0.184 1.184 22 H -0.213 1.213 23 H -0.201 1.201 24 C 0.086 3.914 25 C -0.062 4.062 26 N -0.180 5.180 27 C -0.087 4.087 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.088 0.912 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.150 0.850 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.912 -9.714 2.152 19.622 hybrid contribution 0.709 1.411 -0.055 1.580 sum -16.202 -8.303 2.097 18.326 Atomic orbital electron populations 1.23404 0.75911 1.05703 1.02656 1.86040 1.23874 1.26412 1.88391 1.18594 0.90957 0.85231 0.94599 1.21400 1.01449 0.91050 1.10731 1.20971 0.92052 0.98749 0.94029 1.19855 0.95239 0.93457 1.11068 1.18555 0.82115 0.93371 0.95861 1.19658 0.92554 0.96340 1.13540 1.86003 1.17222 1.36037 1.83835 1.22752 0.96432 0.81558 0.98661 1.21872 0.97334 0.92952 1.03247 0.86323 1.20298 0.84021 0.87961 0.82986 1.90520 1.69561 1.56821 1.32235 1.43829 1.28005 1.15927 1.28936 1.19732 1.02367 0.90579 1.33757 0.89450 1.25916 0.94612 1.02925 0.96259 1.69938 1.11169 1.32006 1.40230 0.84940 0.76693 0.77660 0.79205 1.18412 1.21329 1.20100 1.19236 0.93836 0.87597 0.90723 1.29702 0.92718 0.91206 0.92559 1.80888 1.11894 1.15784 1.09471 1.20215 0.91492 0.93652 1.03296 0.91393 0.86321 0.91230 0.82099 0.82654 0.84971 0.91953 0.88729 0.91356 0.84467 0.85295 0.90668 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.88 10.50 -92.41 -0.97 -7.85 16 3 C 0.15 3.55 6.68 22.46 0.15 3.70 16 4 C -0.23 -4.35 9.04 22.35 0.20 -4.15 16 5 C -0.04 -0.85 9.66 22.29 0.22 -0.63 16 6 C -0.20 -5.36 5.75 -19.72 -0.11 -5.47 16 7 C 0.15 4.47 6.47 22.51 0.15 4.62 16 8 C -0.20 -5.65 9.87 22.52 0.22 -5.43 16 9 O -0.32 -10.90 10.27 -91.97 -0.94 -11.85 16 10 C 0.08 2.95 6.26 72.12 0.45 3.40 16 11 C -0.13 -4.52 2.09 -11.38 -0.02 -4.54 16 12 H 0.12 3.49 6.02 -2.39 -0.01 3.48 16 13 C 0.46 19.96 6.63 87.65 0.58 20.54 16 14 O -0.61 -30.89 15.59 -3.08 -0.05 -30.94 16 15 N -0.45 -20.18 2.61 -645.41 -1.68 -21.87 16 16 C -0.34 -16.95 9.38 84.04 0.79 -16.16 16 17 H 0.09 4.73 7.36 -2.91 -0.02 4.71 16 18 C 0.00 0.23 4.99 84.93 0.42 0.65 16 19 N -0.89 -43.11 9.24 21.66 0.20 -42.91 16 20 Si 0.99 38.99 29.59 68.60 2.03 41.02 16 21 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.29 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 24 C 0.21 8.10 4.92 84.57 0.42 8.51 16 25 C 0.26 10.97 11.67 89.46 1.04 12.01 16 26 N -0.50 -23.23 18.09 19.99 0.36 -22.87 16 27 C -0.05 -1.47 4.99 29.90 0.15 -1.32 16 28 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 29 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.56 7.67 -2.39 -0.02 0.54 16 31 H 0.16 1.94 6.31 -2.91 -0.02 1.92 16 32 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.09 3.72 5.30 -2.39 -0.01 3.71 16 36 H 0.28 12.84 8.31 -92.70 -0.77 12.07 16 37 H 0.14 5.39 6.09 -2.39 -0.01 5.37 16 38 H 0.13 3.68 6.00 -2.39 -0.01 3.66 16 39 H 0.07 2.52 7.42 -2.38 -0.02 2.50 16 40 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -65.87 334.08 5.81 -60.07 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 1.10 Total: 20.17 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 5.77 Total: 17.02 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -1.12 Total: -87.65 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -1.96 Total: -50.63 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -65.87 5.81 -60.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362880033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.943 kcal (2) G-P(sol) polarization free energy of solvation -65.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds