Wall clock time and date at job start Tue Mar 31 2020 10:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47524 * 2 1 4 4 C 1.50697 * 109.47237 * 239.99819 * 2 1 3 5 5 H 1.07998 * 119.99971 * 240.00374 * 4 2 1 6 6 C 1.37878 * 120.00294 * 59.99805 * 4 2 1 7 7 N 1.31515 * 119.99490 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00388 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47064 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47290 * 120.00280 * 8 6 4 11 11 H 1.48498 * 109.47112 * 240.00570 * 8 6 4 12 12 N 1.46500 * 109.46922 * 119.99878 * 2 1 3 13 13 C 1.34779 * 120.00139 * 274.99584 * 12 2 1 14 14 O 1.21281 * 119.99657 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00211 * 180.02562 * 13 12 2 16 16 H 1.09004 * 109.46885 * 300.00314 * 15 13 12 17 17 C 1.53002 * 109.46987 * 59.99982 * 15 13 12 18 18 N 1.46502 * 109.47163 * 180.02562 * 15 13 12 19 19 C 1.34524 * 124.45777 * 119.99875 * 18 15 13 20 20 O 1.21453 * 125.70963 * 359.95841 * 19 18 15 21 21 C 1.47810 * 108.58056 * 180.22060 * 19 18 15 22 22 C 1.38563 * 134.29737 * 180.48941 * 21 19 18 23 23 C 1.38617 * 119.72395 * 179.62649 * 22 21 19 24 24 C 1.38222 * 120.45308 * 359.67397 * 23 22 21 25 25 C 1.38615 * 120.46408 * 0.02562 * 24 23 22 26 26 C 1.38562 * 119.72022 * 0.02562 * 25 24 23 27 27 C 1.34519 * 124.46251 * 299.97719 * 18 15 13 28 28 O 1.21445 * 125.70908 * 0.06005 * 27 18 15 29 29 H 1.08999 * 109.47524 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46873 * 300.00500 * 1 2 3 31 31 H 1.09005 * 109.46949 * 59.99700 * 1 2 3 32 32 H 0.97001 * 119.99595 * 179.97438 * 7 6 4 33 33 H 0.97001 * 119.99830 * 95.00036 * 12 2 1 34 34 H 1.08994 * 109.47344 * 300.00414 * 17 15 13 35 35 H 1.09004 * 109.47037 * 60.00426 * 17 15 13 36 36 H 1.08998 * 109.46809 * 179.97438 * 17 15 13 37 37 H 1.08003 * 120.13924 * 359.30151 * 22 21 19 38 38 H 1.08000 * 119.77033 * 179.70129 * 23 22 21 39 39 H 1.08002 * 119.77265 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.14173 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1466 -0.1876 -4.8164 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6498 -0.7284 3.5875 16 1 1.9776 -1.5508 3.8326 17 6 4.0526 -1.2785 3.3214 18 7 2.6985 0.2128 4.7091 19 6 2.0115 0.0660 5.8563 20 8 1.2636 -0.8533 6.1220 21 6 2.3142 1.2139 6.7369 22 6 1.9164 1.5881 8.0103 23 6 2.4069 2.7588 8.5674 24 6 3.2947 3.5510 7.8641 25 6 3.7064 3.1862 6.5918 26 6 3.2236 2.0192 6.0218 27 6 3.4364 1.3374 4.7276 28 8 4.1559 1.7280 3.8306 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7095 1.1616 -3.4844 33 1 2.2489 -1.6318 1.1526 34 1 4.0160 -1.9788 2.4870 35 1 4.7248 -0.4562 3.0763 36 1 4.4164 -1.7918 4.2114 37 1 1.2229 0.9729 8.5644 38 1 2.0935 3.0536 9.5580 39 1 3.6703 4.4607 8.3089 40 1 4.4006 3.8089 6.0471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411750023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:54 Heat of formation + Delta-G solvation = -50.083777 kcal Electronic energy + Delta-G solvation = -26243.248498 eV Core-core repulsion = 22410.209455 eV Total energy + Delta-G solvation = -3833.039043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.43414 -39.31435 -38.59205 -38.23321 -35.82731 -34.79679 -33.56586 -32.31305 -31.40403 -30.31249 -28.59683 -25.36443 -25.22663 -25.11747 -23.37622 -22.33400 -21.22197 -19.98610 -19.33794 -18.03654 -17.66533 -17.01465 -16.46860 -16.24071 -15.54503 -15.32658 -15.21103 -14.84756 -14.55203 -14.51498 -14.26077 -13.93880 -13.81808 -13.30895 -13.07190 -12.65395 -12.59934 -12.44182 -12.21012 -12.07015 -11.77373 -11.56429 -11.10693 -10.96023 -10.75537 -10.56215 -10.32036 -10.25044 -10.20884 -10.07179 -9.51235 -9.48529 -9.05897 -8.94932 -8.56419 -7.96918 -6.12664 -4.22032 -0.07702 0.70388 1.91024 2.20351 2.96193 3.21678 3.24168 3.31778 3.34461 3.36584 3.50966 3.96579 4.22001 4.35377 4.36116 4.56132 4.76764 4.92920 4.93796 4.95144 5.09971 5.13618 5.19906 5.36877 5.47948 5.62688 5.67983 5.77088 5.85631 5.88149 6.07912 6.29486 6.69042 6.81147 6.94377 7.13270 7.21808 7.40475 7.51006 7.66076 7.71587 7.89899 8.13315 8.58109 8.75005 9.02566 9.45058 10.93490 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025951 B = 0.003147 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.696077 B = 8895.277417 C = 9073.568408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.700 5.700 13 C 0.496 3.504 14 O -0.537 6.537 15 C 0.117 3.883 16 H 0.128 0.872 17 C -0.161 4.161 18 N -0.557 5.557 19 C 0.578 3.422 20 O -0.471 6.471 21 C -0.138 4.138 22 C -0.047 4.047 23 C -0.102 4.102 24 C -0.097 4.097 25 C -0.049 4.049 26 C -0.127 4.127 27 C 0.577 3.423 28 O -0.438 6.438 29 H 0.027 0.973 30 H 0.013 0.987 31 H 0.091 0.909 32 H 0.264 0.736 33 H 0.390 0.610 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.217 0.653 22.509 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.279 3.721 14 O -0.415 6.415 15 C 0.012 3.988 16 H 0.145 0.855 17 C -0.219 4.219 18 N -0.299 5.299 19 C 0.367 3.633 20 O -0.343 6.343 21 C -0.142 4.142 22 C -0.065 4.065 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.067 4.067 26 C -0.131 4.131 27 C 0.365 3.635 28 O -0.307 6.307 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.222 0.778 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.909 1.292 21.918 22.499 hybrid contribution 0.236 -0.909 -0.991 1.365 sum 5.145 0.383 20.927 21.554 Atomic orbital electron populations 1.22083 0.98384 0.99191 1.00924 1.18788 0.91022 0.94073 0.79689 0.93243 1.21231 1.32451 1.13238 0.90208 0.91930 1.24896 0.94800 0.94957 0.99098 1.69917 1.35894 1.22433 1.23802 0.86373 0.78586 0.79511 0.82509 1.19698 1.20873 1.20868 1.46440 1.64836 1.13534 1.10073 1.20219 0.79370 0.87794 0.84759 1.90690 1.50615 1.15562 1.84604 1.21351 1.00961 0.91405 0.85069 0.85469 1.22124 0.94082 1.02542 1.03175 1.46201 1.43104 1.24001 1.16581 1.18330 0.78484 0.85231 0.81236 1.90789 1.32952 1.34340 1.76176 1.20570 1.00702 0.96573 0.96331 1.20781 0.97559 0.95998 0.92202 1.21421 0.96434 0.93730 1.00434 1.21448 0.96497 0.99780 0.93746 1.20824 0.97751 0.93617 0.94546 1.20671 0.99930 0.97339 0.95183 1.18175 0.79038 0.79778 0.86515 1.90814 1.34424 1.65587 1.39825 0.95355 0.96755 0.89042 0.92607 0.77771 0.89451 0.90257 0.91298 0.84118 0.84199 0.84168 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.15 0.34 -3.40 16 2 C 0.27 6.89 2.56 -69.09 -0.18 6.71 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 4 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.18 11.32 55.43 0.63 -24.56 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.70 -14.83 4.96 -54.94 -0.27 -15.10 16 13 C 0.50 10.37 6.84 -10.98 -0.08 10.29 16 14 O -0.54 -13.48 14.57 -8.64 -0.13 -13.60 16 15 C 0.12 1.87 3.20 -69.08 -0.22 1.65 16 16 H 0.13 1.79 7.58 -51.93 -0.39 1.40 16 17 C -0.16 -2.12 9.10 37.16 0.34 -1.78 16 18 N -0.56 -9.01 2.31 -111.74 -0.26 -9.27 16 19 C 0.58 8.68 8.02 -12.46 -0.10 8.58 16 20 O -0.47 -7.71 17.43 5.41 0.09 -7.61 16 21 C -0.14 -1.70 6.40 -104.83 -0.67 -2.37 16 22 C -0.05 -0.41 10.09 -39.32 -0.40 -0.80 16 23 C -0.10 -0.64 10.04 -39.45 -0.40 -1.04 16 24 C -0.10 -0.64 10.03 -39.45 -0.40 -1.03 16 25 C -0.05 -0.47 10.09 -39.32 -0.40 -0.86 16 26 C -0.13 -1.66 6.41 -104.83 -0.67 -2.33 16 27 C 0.58 9.62 6.67 -12.46 -0.08 9.54 16 28 O -0.44 -8.57 15.57 -8.79 -0.14 -8.71 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.39 6.96 7.96 -40.82 -0.32 6.63 16 34 H 0.09 1.01 7.56 -51.93 -0.39 0.62 16 35 H 0.08 1.21 6.84 -51.93 -0.36 0.85 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 38 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 39 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -34.99 346.07 -7.85 -42.84 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.68 Total: 4.71 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -3.30 Total: 10.32 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.10 Total: -48.93 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.17 Total: -29.93 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.99 -7.85 -42.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411750023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.242 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds