Wall clock time and date at job start Tue Mar 31 2020 10:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47524 * 2 1 4 4 C 1.50697 * 109.47237 * 239.99819 * 2 1 3 5 5 H 1.07998 * 119.99971 * 240.00374 * 4 2 1 6 6 C 1.37878 * 120.00294 * 59.99805 * 4 2 1 7 7 N 1.31515 * 119.99490 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00388 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47064 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47290 * 120.00280 * 8 6 4 11 11 H 1.48498 * 109.47112 * 240.00570 * 8 6 4 12 12 N 1.46500 * 109.46922 * 119.99878 * 2 1 3 13 13 C 1.34779 * 120.00139 * 274.99584 * 12 2 1 14 14 O 1.21281 * 119.99657 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00211 * 180.02562 * 13 12 2 16 16 H 1.09004 * 109.46885 * 300.00314 * 15 13 12 17 17 C 1.53002 * 109.46987 * 59.99982 * 15 13 12 18 18 N 1.46502 * 109.47163 * 180.02562 * 15 13 12 19 19 C 1.34524 * 124.45777 * 119.99875 * 18 15 13 20 20 O 1.21453 * 125.70963 * 359.95841 * 19 18 15 21 21 C 1.47810 * 108.58056 * 180.22060 * 19 18 15 22 22 C 1.38563 * 134.29737 * 180.48941 * 21 19 18 23 23 C 1.38617 * 119.72395 * 179.62649 * 22 21 19 24 24 C 1.38222 * 120.45308 * 359.67397 * 23 22 21 25 25 C 1.38615 * 120.46408 * 0.02562 * 24 23 22 26 26 C 1.38562 * 119.72022 * 0.02562 * 25 24 23 27 27 C 1.34519 * 124.46251 * 299.97719 * 18 15 13 28 28 O 1.21445 * 125.70908 * 0.06005 * 27 18 15 29 29 H 1.08999 * 109.47524 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46873 * 300.00500 * 1 2 3 31 31 H 1.09005 * 109.46949 * 59.99700 * 1 2 3 32 32 H 0.97001 * 119.99595 * 179.97438 * 7 6 4 33 33 H 0.97001 * 119.99830 * 95.00036 * 12 2 1 34 34 H 1.08994 * 109.47344 * 300.00414 * 17 15 13 35 35 H 1.09004 * 109.47037 * 60.00426 * 17 15 13 36 36 H 1.08998 * 109.46809 * 179.97438 * 17 15 13 37 37 H 1.08003 * 120.13924 * 359.30151 * 22 21 19 38 38 H 1.08000 * 119.77033 * 179.70129 * 23 22 21 39 39 H 1.08002 * 119.77265 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.14173 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1466 -0.1876 -4.8164 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6498 -0.7284 3.5875 16 1 1.9776 -1.5508 3.8326 17 6 4.0526 -1.2785 3.3214 18 7 2.6985 0.2128 4.7091 19 6 2.0115 0.0660 5.8563 20 8 1.2636 -0.8533 6.1220 21 6 2.3142 1.2139 6.7369 22 6 1.9164 1.5881 8.0103 23 6 2.4069 2.7588 8.5674 24 6 3.2947 3.5510 7.8641 25 6 3.7064 3.1862 6.5918 26 6 3.2236 2.0192 6.0218 27 6 3.4364 1.3374 4.7276 28 8 4.1559 1.7280 3.8306 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7095 1.1616 -3.4844 33 1 2.2489 -1.6318 1.1526 34 1 4.0160 -1.9788 2.4870 35 1 4.7248 -0.4562 3.0763 36 1 4.4164 -1.7918 4.2114 37 1 1.2229 0.9729 8.5644 38 1 2.0935 3.0536 9.5580 39 1 3.6703 4.4607 8.3089 40 1 4.4006 3.8089 6.0471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411750023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:53 Heat of formation + Delta-G solvation = -73.969506 kcal Electronic energy + Delta-G solvation = -26244.284260 eV Core-core repulsion = 22410.209455 eV Total energy + Delta-G solvation = -3834.074806 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.54684 -40.79563 -39.78374 -39.33120 -37.16434 -36.70007 -34.89671 -34.10014 -32.11240 -31.51801 -30.33847 -27.40280 -26.41769 -26.16142 -24.62020 -23.27588 -22.77632 -21.45332 -20.82890 -19.36928 -18.87658 -18.19878 -17.94706 -17.50737 -17.08838 -16.93007 -16.44864 -16.19707 -15.88874 -15.46874 -15.38088 -15.17310 -15.04594 -14.99957 -14.53805 -14.01983 -13.77682 -13.60347 -13.50364 -13.24362 -13.15046 -13.03881 -12.88956 -12.78173 -12.52504 -12.33034 -12.14022 -11.64354 -11.49640 -11.35388 -11.15469 -10.70587 -10.60120 -10.21108 -10.17817 -9.88450 -8.20979 -6.39014 -1.00281 -0.00217 0.99588 1.05339 1.42957 1.43805 1.55625 1.57383 1.78229 2.28396 2.45404 2.60013 2.67613 3.09746 3.19697 3.60252 3.61376 3.72133 3.77942 4.06578 4.08858 4.19347 4.25726 4.47996 4.55010 4.66008 4.68341 4.83731 4.85127 4.92434 5.01466 5.02385 5.22310 5.27294 5.35030 5.51418 5.53895 5.60547 5.71985 5.82107 6.03024 6.07699 6.48923 6.67413 6.78892 7.24773 7.40012 8.86030 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025951 B = 0.003147 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.696077 B = 8895.277417 C = 9073.568408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.078 0.922 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.257 1.257 10 H -0.277 1.277 11 H -0.285 1.285 12 N -0.694 5.694 13 C 0.491 3.509 14 O -0.585 6.585 15 C 0.122 3.878 16 H 0.150 0.850 17 C -0.152 4.152 18 N -0.567 5.567 19 C 0.575 3.425 20 O -0.492 6.492 21 C -0.160 4.160 22 C -0.041 4.041 23 C -0.081 4.081 24 C -0.080 4.080 25 C -0.052 4.052 26 C -0.159 4.159 27 C 0.568 3.432 28 O -0.487 6.487 29 H 0.044 0.956 30 H 0.007 0.993 31 H 0.068 0.932 32 H 0.266 0.734 33 H 0.408 0.592 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.161 0.839 38 H 0.187 0.813 39 H 0.183 0.817 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.756 -0.055 25.254 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.181 1.181 10 H -0.203 1.203 11 H -0.211 1.211 12 N -0.344 5.344 13 C 0.276 3.724 14 O -0.466 6.466 15 C 0.017 3.983 16 H 0.167 0.833 17 C -0.210 4.210 18 N -0.308 5.308 19 C 0.366 3.634 20 O -0.366 6.366 21 C -0.163 4.163 22 C -0.059 4.059 23 C -0.099 4.099 24 C -0.097 4.097 25 C -0.071 4.071 26 C -0.163 4.163 27 C 0.359 3.641 28 O -0.359 6.359 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.179 0.821 38 H 0.204 0.796 39 H 0.200 0.800 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.455 0.537 24.708 25.309 hybrid contribution 0.044 -0.560 -1.692 1.783 sum 5.499 -0.023 23.017 23.665 Atomic orbital electron populations 1.21899 0.98179 0.99676 0.99428 1.18371 0.91137 0.91796 0.81727 0.98806 1.21557 1.32665 1.13644 0.90508 0.90438 1.25858 0.94820 0.95586 1.02500 1.70072 1.37048 1.23992 1.24629 0.85231 0.78109 0.78505 0.78098 1.18075 1.20286 1.21074 1.46148 1.64774 1.14280 1.09156 1.21100 0.78059 0.87375 0.85898 1.90658 1.52423 1.17939 1.85570 1.21374 1.02826 0.91251 0.82881 0.83269 1.22120 0.91612 1.01999 1.05294 1.46390 1.43373 1.24170 1.16886 1.18817 0.77602 0.85730 0.81218 1.90758 1.33819 1.35370 1.76628 1.20507 1.02293 0.95703 0.97801 1.21215 0.97162 0.96971 0.90584 1.21995 0.94377 0.91742 1.01776 1.21964 0.95122 1.00738 0.91897 1.21164 0.97586 0.92380 0.95951 1.20564 1.02507 0.99441 0.93782 1.18905 0.77911 0.79814 0.87433 1.90767 1.36625 1.66761 1.41786 0.93651 0.97418 0.91299 0.92510 0.75572 0.87607 0.92742 0.88338 0.82127 0.79567 0.79970 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.03 9.26 71.98 0.67 -6.37 16 2 C 0.27 14.77 2.56 44.24 0.11 14.88 16 3 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 4 C -0.55 -29.49 8.73 25.60 0.22 -29.27 16 5 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 8 Si 0.98 42.67 29.54 68.60 2.03 44.69 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 N -0.69 -30.27 4.96 -446.11 -2.21 -32.48 16 13 C 0.49 21.50 6.84 87.66 0.60 22.10 16 14 O -0.59 -31.45 14.57 10.55 0.15 -31.29 16 15 C 0.12 3.98 3.20 44.25 0.14 4.12 16 16 H 0.15 4.17 7.58 -2.38 -0.02 4.15 16 17 C -0.15 -4.01 9.10 71.98 0.65 -3.35 16 18 N -0.57 -19.09 2.31 -744.38 -1.72 -20.81 16 19 C 0.57 17.55 8.02 86.82 0.70 18.25 16 20 O -0.49 -16.15 17.43 -3.57 -0.06 -16.22 16 21 C -0.16 -3.82 6.40 -20.00 -0.13 -3.95 16 22 C -0.04 -0.58 10.09 22.44 0.23 -0.36 16 23 C -0.08 -0.61 10.04 22.36 0.22 -0.39 16 24 C -0.08 -0.70 10.03 22.36 0.22 -0.48 16 25 C -0.05 -0.93 10.09 22.44 0.23 -0.70 16 26 C -0.16 -4.19 6.41 -20.00 -0.13 -4.32 16 27 C 0.57 20.14 6.67 86.82 0.58 20.72 16 28 O -0.49 -20.67 15.57 10.03 0.16 -20.51 16 29 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 3.96 6.07 -2.38 -0.01 3.94 16 32 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 33 H 0.41 14.51 7.96 -92.71 -0.74 13.77 16 34 H 0.11 2.33 7.56 -2.39 -0.02 2.32 16 35 H 0.05 1.73 6.84 -2.38 -0.02 1.71 16 36 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.19 -0.20 8.06 -2.91 -0.02 -0.22 16 39 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -83.17 346.07 3.70 -79.47 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.35 Total: 18.93 kcal Atomic # 6 Polarization: 27.24 SS G_CDS: 4.77 Total: 32.01 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -3.69 Total: -107.07 kcal Atomic # 8 Polarization: -68.27 SS G_CDS: 0.25 Total: -68.02 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -83.17 3.70 -79.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411750023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.497 kcal (2) G-P(sol) polarization free energy of solvation -83.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds