Wall clock time and date at job start Tue Mar 31 2020 10:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47465 * 2 1 4 4 C 1.53002 * 109.47173 * 239.99870 * 2 1 3 5 5 C 1.50703 * 109.47006 * 175.00300 * 4 2 1 6 6 H 1.08000 * 119.99884 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99980 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99828 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 119.99996 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47472 * 90.00108 * 9 7 5 11 11 H 1.48503 * 109.47193 * 209.99577 * 9 7 5 12 12 H 1.48497 * 109.47377 * 329.99623 * 9 7 5 13 13 S 1.81401 * 109.47079 * 119.99921 * 2 1 3 14 14 C 1.76203 * 103.00168 * 295.00023 * 13 2 1 15 15 N 1.31081 * 125.99206 * 359.97236 * 14 13 2 16 16 N 1.40071 * 108.02655 * 180.02562 * 15 14 13 17 17 C 1.31376 * 108.02458 * 0.02562 * 16 15 14 18 18 N 1.38432 * 143.43712 * 180.02562 * 17 16 15 19 19 C 1.46506 * 125.96049 * 359.96964 * 18 17 16 20 20 C 1.39133 * 108.07424 * 180.24107 * 18 17 16 21 21 C 1.38871 * 132.70625 * 180.49714 * 20 18 17 22 22 C 1.38032 * 119.89634 * 179.59085 * 21 20 18 23 23 C 1.38445 * 120.25527 * 359.69169 * 22 21 20 24 24 C 1.38082 * 120.26773 * 0.02562 * 23 22 21 25 25 C 1.38745 * 119.91930 * 359.97438 * 24 23 22 26 26 N 1.36645 * 107.93689 * 359.97438 * 17 16 15 27 27 H 1.08999 * 109.47465 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47103 * 300.00099 * 1 2 3 29 29 H 1.08998 * 109.47031 * 59.99821 * 1 2 3 30 30 H 1.08994 * 109.46932 * 294.99695 * 4 2 1 31 31 H 1.08995 * 109.47029 * 55.00183 * 4 2 1 32 32 H 0.96995 * 120.00073 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46871 * 90.02896 * 19 18 17 34 34 H 1.08994 * 109.46947 * 210.02604 * 19 18 17 35 35 H 1.08997 * 109.47271 * 330.03120 * 19 18 17 36 36 H 1.08005 * 120.05187 * 359.28526 * 21 20 18 37 37 H 1.08004 * 119.87670 * 179.71326 * 22 21 20 38 38 H 1.08001 * 119.86520 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.04380 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1927 -2.3582 8 7 3.5764 -1.8370 -3.2999 9 14 6.0919 -1.0604 -2.4372 10 1 6.7009 -2.2130 -1.7259 11 1 6.5290 -1.0678 -3.8565 12 1 6.5261 0.2048 -1.7923 13 16 2.1346 -0.8551 1.4812 14 6 1.5827 0.1846 2.7923 15 7 0.9023 1.2971 2.6589 16 7 0.6643 1.8156 3.9381 17 6 1.2085 1.0020 4.8143 18 7 1.4103 0.8004 6.1689 19 6 0.9447 1.6755 7.2477 20 6 2.1379 -0.3750 6.3268 21 6 2.6052 -1.0503 7.4466 22 6 3.3093 -2.2280 7.2959 23 6 3.5461 -2.7422 6.0325 24 6 3.0804 -2.0810 4.9133 25 6 2.3716 -0.8966 5.0542 26 7 1.7899 -0.0271 4.1286 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.7517 -1.7715 -1.2055 31 1 1.6054 -0.2618 -2.1369 32 1 4.0607 -2.2438 -4.0353 33 1 -0.0488 1.3610 7.5674 34 1 1.6341 1.6126 8.0896 35 1 0.9023 2.7037 6.8888 36 1 2.4223 -0.6521 8.4338 37 1 3.6766 -2.7505 8.1668 38 1 4.0981 -3.6639 5.9218 39 1 3.2669 -2.4856 3.9295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413002467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:39 Heat of formation + Delta-G solvation = 145.924087 kcal Electronic energy + Delta-G solvation = -23220.605546 eV Core-core repulsion = 19871.111664 eV Total energy + Delta-G solvation = -3349.493882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.21430 -39.61378 -36.95927 -34.67848 -34.13990 -32.11131 -30.91397 -30.34298 -29.44089 -27.53911 -27.10248 -23.86102 -23.33035 -22.75134 -21.47346 -21.38742 -20.36094 -18.37190 -17.63898 -16.86170 -16.54354 -16.39470 -15.79705 -15.08605 -14.71701 -14.54091 -14.52302 -14.40930 -14.33571 -13.24918 -13.05146 -12.88490 -12.63300 -12.47518 -11.88624 -11.67519 -11.61137 -11.57018 -11.32633 -11.14119 -11.03992 -10.96849 -10.81028 -10.57455 -10.50423 -9.85141 -9.54120 -9.50526 -9.19675 -8.75163 -8.42580 -8.21177 -7.05570 -6.07380 -4.09937 0.73482 0.97169 1.33112 1.77154 2.16638 2.52854 2.67317 2.87958 3.30626 3.37040 3.39346 3.41616 3.86409 4.30496 4.42303 4.54957 4.62472 4.87445 4.89329 4.92927 5.02575 5.06004 5.19181 5.30151 5.48404 5.53257 5.68429 5.70525 5.82501 6.04550 6.11586 6.13072 6.21954 6.35315 6.50722 6.58775 6.69297 6.76204 7.03135 7.46710 7.51364 7.89648 8.08389 8.24965 8.94915 9.54714 11.03581 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.003863 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.302276 B = 7246.997541 C = 8352.042501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 H 0.092 0.908 4 C 0.039 3.961 5 C -0.525 4.525 6 H 0.064 0.936 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.272 1.272 13 S 0.016 5.984 14 C 0.219 3.781 15 N -0.289 5.289 16 N -0.330 5.330 17 C 0.423 3.577 18 N -0.502 5.502 19 C 0.105 3.895 20 C 0.139 3.861 21 C -0.125 4.125 22 C -0.087 4.087 23 C -0.124 4.124 24 C -0.071 4.071 25 C 0.074 3.926 26 N -0.450 5.450 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 -0.643 24.006 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 H 0.110 0.890 4 C 0.000 4.000 5 C -0.563 4.563 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.197 1.197 13 S 0.245 5.755 14 C -0.159 4.159 15 N -0.122 5.122 16 N -0.171 5.171 17 C 0.063 3.937 18 N -0.208 5.208 19 C -0.036 4.036 20 C 0.036 3.964 21 C -0.147 4.147 22 C -0.106 4.106 23 C -0.144 4.144 24 C -0.092 4.092 25 C -0.027 4.027 26 N -0.146 5.146 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.005 -0.198 23.165 23.360 hybrid contribution 0.960 0.302 0.342 1.063 sum -2.045 0.105 23.507 23.596 Atomic orbital electron populations 1.22131 0.94068 1.02146 1.02458 1.23800 0.97574 1.02794 0.93994 0.89011 1.19101 0.96587 0.95729 0.88589 1.21261 0.91437 1.35009 1.08607 0.91820 1.24973 0.98546 0.95043 0.95455 1.69948 1.35706 1.35519 1.11982 0.86581 0.85587 0.78671 0.77197 1.20522 1.21207 1.19725 1.86027 1.68211 1.28161 0.93116 1.26892 1.02392 1.00666 0.85946 1.78375 1.17279 1.06376 1.10128 1.78243 1.25627 1.20588 0.92659 1.22090 0.97545 0.89427 0.84669 1.43104 1.53834 1.22871 1.01006 1.21854 1.00302 0.93895 0.87527 1.18109 0.97231 0.87127 0.93964 1.20032 1.02510 0.96498 0.95692 1.20955 0.97197 0.94591 0.97904 1.20940 1.01426 1.00807 0.91217 1.20477 0.95995 0.91695 1.01062 1.17951 1.03962 0.95504 0.85248 1.44544 1.44507 1.21005 1.04534 0.92340 0.92085 0.91624 0.95315 0.93794 0.92820 0.91120 0.89521 0.89331 0.84809 0.84494 0.84331 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.06 37.16 0.34 -2.43 16 2 C -0.05 -1.11 2.49 -26.73 -0.07 -1.18 16 3 H 0.09 2.02 8.14 -51.92 -0.42 1.60 16 4 C 0.04 0.96 4.45 -27.88 -0.12 0.84 16 5 C -0.52 -14.25 8.53 -34.44 -0.29 -14.54 16 6 H 0.06 1.72 7.60 -52.49 -0.40 1.32 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 S 0.02 0.32 20.90 -107.50 -2.25 -1.93 16 14 C 0.22 4.32 8.17 -88.19 -0.72 3.60 16 15 N -0.29 -6.03 10.64 30.71 0.33 -5.70 16 16 N -0.33 -6.46 12.73 30.35 0.39 -6.07 16 17 C 0.42 7.23 9.20 -318.62 -2.93 4.30 16 18 N -0.50 -6.33 3.28 -122.21 -0.40 -6.73 16 19 C 0.10 0.79 11.14 59.85 0.67 1.45 16 20 C 0.14 1.65 6.81 -83.84 -0.57 1.08 16 21 C -0.13 -1.01 10.00 -39.42 -0.39 -1.41 16 22 C -0.09 -0.62 10.03 -39.58 -0.40 -1.02 16 23 C -0.12 -1.07 10.03 -39.56 -0.40 -1.47 16 24 C -0.07 -0.87 10.07 -39.45 -0.40 -1.26 16 25 C 0.07 1.07 7.22 -83.62 -0.60 0.46 16 26 N -0.45 -7.99 3.48 -61.32 -0.21 -8.20 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.15 6.25 -51.93 -0.32 0.82 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -33.36 347.38 -12.12 -45.48 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.93 Total: -3.27 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -5.99 Total: -9.96 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.83 Total: -51.90 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.25 Total: -1.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.36 -12.12 -45.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413002467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.408 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds