Wall clock time and date at job start Tue Mar 31 2020 10:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47465 * 2 1 4 4 C 1.53002 * 109.47173 * 239.99870 * 2 1 3 5 5 C 1.50703 * 109.47006 * 175.00300 * 4 2 1 6 6 H 1.08000 * 119.99884 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99980 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99828 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 119.99996 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47472 * 90.00108 * 9 7 5 11 11 H 1.48503 * 109.47193 * 209.99577 * 9 7 5 12 12 H 1.48497 * 109.47377 * 329.99623 * 9 7 5 13 13 S 1.81401 * 109.47079 * 119.99921 * 2 1 3 14 14 C 1.76203 * 103.00168 * 295.00023 * 13 2 1 15 15 N 1.31081 * 125.99206 * 359.97236 * 14 13 2 16 16 N 1.40071 * 108.02655 * 180.02562 * 15 14 13 17 17 C 1.31376 * 108.02458 * 0.02562 * 16 15 14 18 18 N 1.38432 * 143.43712 * 180.02562 * 17 16 15 19 19 C 1.46506 * 125.96049 * 359.96964 * 18 17 16 20 20 C 1.39133 * 108.07424 * 180.24107 * 18 17 16 21 21 C 1.38871 * 132.70625 * 180.49714 * 20 18 17 22 22 C 1.38032 * 119.89634 * 179.59085 * 21 20 18 23 23 C 1.38445 * 120.25527 * 359.69169 * 22 21 20 24 24 C 1.38082 * 120.26773 * 0.02562 * 23 22 21 25 25 C 1.38745 * 119.91930 * 359.97438 * 24 23 22 26 26 N 1.36645 * 107.93689 * 359.97438 * 17 16 15 27 27 H 1.08999 * 109.47465 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47103 * 300.00099 * 1 2 3 29 29 H 1.08998 * 109.47031 * 59.99821 * 1 2 3 30 30 H 1.08994 * 109.46932 * 294.99695 * 4 2 1 31 31 H 1.08995 * 109.47029 * 55.00183 * 4 2 1 32 32 H 0.96995 * 120.00073 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46871 * 90.02896 * 19 18 17 34 34 H 1.08994 * 109.46947 * 210.02604 * 19 18 17 35 35 H 1.08997 * 109.47271 * 330.03120 * 19 18 17 36 36 H 1.08005 * 120.05187 * 359.28526 * 21 20 18 37 37 H 1.08004 * 119.87670 * 179.71326 * 22 21 20 38 38 H 1.08001 * 119.86520 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.04380 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1927 -2.3582 8 7 3.5764 -1.8370 -3.2999 9 14 6.0919 -1.0604 -2.4372 10 1 6.7009 -2.2130 -1.7259 11 1 6.5290 -1.0678 -3.8565 12 1 6.5261 0.2048 -1.7923 13 16 2.1346 -0.8551 1.4812 14 6 1.5827 0.1846 2.7923 15 7 0.9023 1.2971 2.6589 16 7 0.6643 1.8156 3.9381 17 6 1.2085 1.0020 4.8143 18 7 1.4103 0.8004 6.1689 19 6 0.9447 1.6755 7.2477 20 6 2.1379 -0.3750 6.3268 21 6 2.6052 -1.0503 7.4466 22 6 3.3093 -2.2280 7.2959 23 6 3.5461 -2.7422 6.0325 24 6 3.0804 -2.0810 4.9133 25 6 2.3716 -0.8966 5.0542 26 7 1.7899 -0.0271 4.1286 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.7517 -1.7715 -1.2055 31 1 1.6054 -0.2618 -2.1369 32 1 4.0607 -2.2438 -4.0353 33 1 -0.0488 1.3610 7.5674 34 1 1.6341 1.6126 8.0896 35 1 0.9023 2.7037 6.8888 36 1 2.4223 -0.6521 8.4338 37 1 3.6766 -2.7505 8.1668 38 1 4.0981 -3.6639 5.9218 39 1 3.2669 -2.4856 3.9295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413002467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:38 Heat of formation + Delta-G solvation = 130.716708 kcal Electronic energy + Delta-G solvation = -23221.264988 eV Core-core repulsion = 19871.111664 eV Total energy + Delta-G solvation = -3350.153323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.37776 -40.64313 -37.82919 -36.53665 -35.25932 -34.10822 -31.94638 -31.36759 -30.40120 -29.40721 -27.99718 -25.30780 -24.94320 -23.74624 -22.75984 -22.53730 -21.83841 -19.47036 -18.54534 -18.50656 -18.02876 -17.72842 -17.10390 -16.59314 -16.20909 -15.74988 -15.41570 -15.29638 -15.15296 -14.85838 -14.36781 -14.08682 -13.75100 -13.45471 -13.39045 -13.26521 -13.11903 -12.76350 -12.65663 -12.56921 -12.46475 -12.38596 -12.29072 -12.14930 -12.08479 -11.55680 -11.28806 -11.12522 -10.93242 -10.55849 -9.65997 -9.31239 -8.47804 -8.21184 -6.30463 -0.16778 -0.13531 0.17246 0.67870 0.90777 1.21059 1.21672 1.40893 1.41379 1.52618 1.59841 2.41124 2.63050 2.88356 3.13925 3.44346 3.70060 3.73044 3.99712 4.01534 4.12736 4.20411 4.23670 4.31055 4.40163 4.46044 4.50509 4.65237 4.71111 4.84158 4.89956 4.93260 5.15816 5.23109 5.33388 5.36393 5.43226 5.45833 5.57898 5.75431 5.78244 5.99352 6.14541 6.73671 6.80532 7.37815 8.90338 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.003863 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.302276 B = 7246.997541 C = 8352.042501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 H 0.078 0.922 4 C 0.049 3.951 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.012 3.988 8 N -0.926 5.926 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.269 1.269 13 S 0.015 5.985 14 C 0.204 3.796 15 N -0.314 5.314 16 N -0.367 5.367 17 C 0.420 3.580 18 N -0.493 5.493 19 C 0.094 3.906 20 C 0.127 3.873 21 C -0.108 4.108 22 C -0.068 4.068 23 C -0.113 4.113 24 C -0.095 4.095 25 C 0.022 3.978 26 N -0.455 5.455 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.011 0.989 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.166 0.834 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -1.632 28.283 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 H 0.096 0.904 4 C 0.010 3.990 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.187 4.187 8 N -0.566 5.566 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.194 1.194 13 S 0.243 5.757 14 C -0.175 4.175 15 N -0.147 5.147 16 N -0.210 5.210 17 C 0.059 3.941 18 N -0.199 5.199 19 C -0.045 4.045 20 C 0.025 3.975 21 C -0.130 4.130 22 C -0.087 4.087 23 C -0.133 4.133 24 C -0.116 4.116 25 C -0.077 4.077 26 N -0.150 5.150 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.195 0.805 37 H 0.202 0.798 38 H 0.184 0.816 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.560 -1.203 27.507 27.578 hybrid contribution 0.553 0.517 -0.710 1.038 sum -1.006 -0.686 26.798 26.825 Atomic orbital electron populations 1.22028 0.92118 1.02714 1.02840 1.23526 0.99161 1.01489 0.93558 0.90392 1.18864 0.95645 0.94787 0.89706 1.21540 0.92686 1.34787 1.08562 0.92172 1.25782 1.03187 0.94671 0.95076 1.70055 1.37524 1.36427 1.12621 0.85581 0.80045 0.78896 0.77423 1.19539 1.20591 1.19359 1.85774 1.68948 1.28074 0.92867 1.26538 1.03381 1.00705 0.86904 1.78227 1.17807 1.06982 1.11730 1.78079 1.28147 1.22108 0.92639 1.22454 0.96424 0.88579 0.86621 1.43588 1.53177 1.23552 0.99623 1.22292 1.02274 0.92914 0.86978 1.18559 0.97773 0.87054 0.94102 1.20635 1.00389 0.95877 0.96080 1.21560 0.94865 0.93703 0.98554 1.21372 1.00027 1.01083 0.90834 1.20612 0.97290 0.91861 1.01827 1.18538 1.06587 0.96934 0.85639 1.44634 1.44472 1.21930 1.03976 0.91633 0.92230 0.90593 0.97044 0.95582 0.92591 0.89498 0.85562 0.89879 0.80541 0.79785 0.81608 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 9.06 71.98 0.65 -4.71 16 2 C -0.05 -2.14 2.49 30.59 0.08 -2.07 16 3 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 4 C 0.05 2.54 4.45 29.85 0.13 2.67 16 5 C -0.54 -30.13 8.53 25.60 0.22 -29.92 16 6 H 0.06 3.35 7.60 -2.91 -0.02 3.33 16 7 C 0.01 0.66 5.46 84.66 0.46 1.12 16 8 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 9 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 S 0.02 0.63 20.90 -56.49 -1.18 -0.55 16 14 C 0.20 8.49 8.17 179.50 1.47 9.96 16 15 N -0.31 -13.83 10.64 -56.75 -0.60 -14.43 16 16 N -0.37 -14.96 12.73 -57.90 -0.74 -15.70 16 17 C 0.42 14.62 9.20 260.02 2.39 17.01 16 18 N -0.49 -11.65 3.28 -540.55 -1.77 -13.42 16 19 C 0.09 1.14 11.14 127.77 1.42 2.56 16 20 C 0.13 2.72 6.81 38.44 0.26 2.98 16 21 C -0.11 -1.18 10.00 22.37 0.22 -0.96 16 22 C -0.07 -0.57 10.03 22.27 0.22 -0.35 16 23 C -0.11 -1.56 10.03 22.28 0.22 -1.34 16 24 C -0.10 -2.26 10.07 22.35 0.23 -2.03 16 25 C 0.02 0.62 7.22 38.31 0.28 0.90 16 26 N -0.45 -16.69 3.48 -347.92 -1.21 -17.90 16 27 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.06 2.34 6.25 -2.38 -0.01 2.33 16 29 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 37 H 0.18 -0.02 8.06 -2.91 -0.02 -0.05 16 38 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -77.70 347.38 6.13 -71.58 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.06 Total: 3.00 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 8.26 Total: -4.17 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -4.04 Total: -116.14 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -1.18 Total: -0.55 kcal Total: -77.70 6.13 -71.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413002467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.293 kcal (2) G-P(sol) polarization free energy of solvation -77.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds