Wall clock time and date at job start Tue Mar 31 2020 11:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35979 * 116.99514 * 2 1 4 4 C 1.39227 * 119.88276 * 0.02562 * 3 2 1 5 5 C 1.37720 * 120.55862 * 180.02562 * 4 3 2 6 6 C 1.38963 * 120.01333 * 359.97438 * 5 4 3 7 7 O 1.34937 * 133.29383 * 179.97438 * 6 5 4 8 8 N 1.41347 * 109.32405 * 180.02562 * 7 6 5 9 9 C 1.29743 * 109.73684 * 359.97438 * 8 7 6 10 10 C 1.50704 * 126.28581 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46786 * 90.02864 * 10 9 8 12 12 O 1.21290 * 120.00605 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99793 * 180.02562 * 11 10 9 14 14 C 1.37101 * 119.99953 * 180.27506 * 13 11 10 15 15 H 1.07996 * 120.00309 * 224.10921 * 14 13 11 16 16 C 1.38953 * 120.00065 * 44.11505 * 14 13 11 17 17 N 1.31414 * 119.99811 * 18.27974 * 16 14 13 18 18 Si 1.86802 * 119.99984 * 198.28282 * 16 14 13 19 19 H 1.48501 * 109.47108 * 89.99716 * 18 16 14 20 20 H 1.48500 * 109.46739 * 209.99798 * 18 16 14 21 21 H 1.48502 * 109.46952 * 329.99662 * 18 16 14 22 22 C 1.46504 * 120.00013 * 359.97438 * 13 11 10 23 23 C 1.53001 * 117.49776 * 183.22465 * 22 13 11 24 24 C 1.52995 * 60.00092 * 252.51764 * 23 22 13 25 25 C 1.40409 * 119.62534 * 0.29849 * 6 5 4 26 26 C 1.38056 * 119.86797 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46848 * 300.00027 * 1 2 3 28 28 H 1.08995 * 109.47093 * 59.99798 * 1 2 3 29 29 H 1.08995 * 109.47212 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.71738 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.99228 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47147 * 330.03323 * 10 9 8 33 33 H 1.08997 * 109.47450 * 210.02948 * 10 9 8 34 34 H 0.97003 * 119.99681 * 174.93859 * 17 16 14 35 35 H 1.08996 * 115.55224 * 328.93995 * 22 13 11 36 36 H 1.09000 * 117.49997 * 0.02562 * 23 22 13 37 37 H 1.09005 * 117.49804 * 145.02449 * 23 22 13 38 38 H 1.09002 * 117.49629 * 252.51514 * 24 23 22 39 39 H 1.08995 * 117.52027 * 107.48829 * 24 23 22 40 40 H 1.08001 * 120.18468 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2855 2.3777 0.0005 5 6 1.8961 3.6121 0.0000 6 6 3.2829 3.7016 -0.0005 7 8 4.1430 4.7413 -0.0015 8 7 5.4689 4.2515 -0.0022 9 6 5.4567 2.9541 -0.0012 10 6 6.6630 2.0509 -0.0020 11 6 7.0665 1.7504 1.4186 12 8 6.4362 2.2228 2.3409 13 7 8.1277 0.9567 1.6642 14 6 8.4914 0.6788 2.9565 15 1 9.5318 0.7129 3.2440 16 6 7.5213 0.3532 3.8965 17 7 6.3305 -0.0393 3.5029 18 14 7.9097 0.4734 5.7197 19 1 7.5726 1.8343 6.2090 20 1 7.1096 -0.5324 6.4636 21 1 9.3558 0.2138 5.9359 22 6 8.8887 0.3856 0.5501 23 6 10.0356 -0.5673 0.8930 24 6 10.3392 0.8412 0.3786 25 6 4.0542 2.5284 -0.0069 26 6 3.4251 1.2808 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 0.2074 2.3135 0.0005 31 1 1.2971 4.5107 0.0000 32 1 7.4868 2.5453 -0.5168 33 1 6.4200 1.1205 -0.5152 34 1 5.6775 -0.3367 4.1557 35 1 8.3157 0.1794 -0.3538 36 1 10.2236 -0.7697 1.9474 37 1 10.2171 -1.4010 0.2146 38 1 10.7205 0.9342 -0.6384 39 1 10.7272 1.5660 1.0942 40 1 4.0142 0.3756 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415063704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:51 Heat of formation + Delta-G solvation = 17.458138 kcal Electronic energy + Delta-G solvation = -26348.704886 eV Core-core repulsion = 22518.594680 eV Total energy + Delta-G solvation = -3830.110205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.84042 -40.61383 -40.38536 -37.85267 -37.37886 -35.63784 -34.67363 -32.95627 -31.87030 -30.71814 -30.31384 -27.98021 -26.81978 -24.47051 -23.38428 -23.25229 -22.88055 -22.20194 -20.71391 -19.41519 -18.51789 -18.23584 -17.82992 -17.56184 -17.06816 -16.73206 -16.57675 -16.47560 -16.00865 -15.75299 -15.30529 -15.06953 -14.63402 -14.53050 -14.35447 -13.97377 -13.65541 -13.44111 -13.34995 -13.03155 -12.99638 -12.83513 -12.69425 -12.37383 -12.18658 -12.15103 -12.02521 -11.89013 -11.81005 -11.64890 -11.20925 -10.74573 -10.12014 -10.00847 -9.07871 -9.00077 -8.21669 -5.99297 -0.50323 0.21463 0.92468 1.33365 1.42527 1.46047 1.47052 2.18429 2.25487 2.36177 2.47939 2.93383 3.12789 3.16311 3.22468 3.37450 3.53855 3.82491 3.93436 4.01689 4.14901 4.16870 4.27531 4.31902 4.37047 4.41534 4.46283 4.52052 4.56181 4.74845 4.83095 4.93273 4.94156 5.04695 5.05816 5.10844 5.29725 5.32008 5.47707 5.52676 6.13849 6.18511 6.36992 6.99999 7.14862 7.64824 8.28443 8.86082 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.004501 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.266670 B = 6219.498691 C = 6861.275354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.333 6.333 3 C 0.099 3.901 4 C -0.131 4.131 5 C -0.082 4.082 6 C 0.023 3.977 7 O -0.110 6.110 8 N -0.311 5.311 9 C 0.163 3.837 10 C -0.062 4.062 11 C 0.476 3.524 12 O -0.582 6.582 13 N -0.436 5.436 14 C -0.355 4.355 15 H 0.079 0.921 16 C 0.025 3.975 17 N -0.863 5.863 18 Si 0.964 3.036 19 H -0.297 1.297 20 H -0.280 1.280 21 H -0.252 1.252 22 C 0.039 3.961 23 C -0.167 4.167 24 C -0.181 4.181 25 C -0.162 4.162 26 C -0.090 4.090 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.190 0.810 31 H 0.177 0.823 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.258 0.742 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.343 -1.286 -12.396 15.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.248 6.248 3 C 0.053 3.947 4 C -0.150 4.150 5 C -0.101 4.101 6 C -0.030 4.030 7 O -0.121 6.121 8 N -0.055 5.055 9 C -0.018 4.018 10 C -0.103 4.103 11 C 0.263 3.737 12 O -0.463 6.463 13 N -0.157 5.157 14 C -0.482 4.482 15 H 0.097 0.903 16 C -0.182 4.182 17 N -0.497 5.497 18 Si 0.789 3.211 19 H -0.224 1.224 20 H -0.205 1.205 21 H -0.176 1.176 22 C -0.066 4.066 23 C -0.205 4.205 24 C -0.220 4.220 25 C -0.165 4.165 26 C -0.111 4.111 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.136 0.864 30 H 0.207 0.793 31 H 0.194 0.806 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.067 0.933 35 H 0.151 0.849 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.110 -0.070 -11.864 14.958 hybrid contribution -0.265 -0.510 1.382 1.497 sum -9.375 -0.581 -10.482 14.075 Atomic orbital electron populations 1.23471 0.75766 1.05967 1.02865 1.86119 1.24044 1.25674 1.88929 1.18690 0.91061 0.85858 0.99044 1.21606 1.02251 0.89471 1.01700 1.20212 0.87467 1.00353 1.02072 1.20692 0.94170 0.86524 1.01594 1.89028 1.12219 1.28239 1.82639 1.79704 0.93164 1.11536 1.21123 1.24175 0.95109 0.92015 0.90490 1.20325 0.93370 0.99134 0.97431 1.20080 0.83493 0.80762 0.89342 1.90546 1.54060 1.54120 1.47600 1.42880 1.27157 1.40953 1.04668 1.19060 0.93540 1.50292 0.85315 0.90319 1.25980 0.95125 0.93872 1.03214 1.69913 1.06144 1.38195 1.35470 0.85411 0.79099 0.76893 0.79671 1.22449 1.20519 1.17557 1.22142 0.88560 1.03423 0.92464 1.23110 1.01362 0.93788 1.02234 1.23342 0.98314 0.97407 1.02940 1.20482 0.90892 0.95203 1.09965 1.19847 0.92990 0.96127 1.02102 0.91460 0.90307 0.86421 0.79345 0.80601 0.85092 0.84960 0.93273 0.84855 0.90146 0.86250 0.85512 0.90957 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -8.63 10.49 -93.31 -0.98 -9.61 16 3 C 0.10 2.85 6.68 22.46 0.15 3.00 16 4 C -0.13 -2.89 9.01 22.38 0.20 -2.69 16 5 C -0.08 -2.09 10.05 22.32 0.22 -1.86 16 6 C 0.02 0.84 7.48 22.97 0.17 1.01 16 7 O -0.11 -4.50 12.07 28.70 0.35 -4.15 16 8 N -0.31 -13.67 12.81 -43.46 -0.56 -14.22 16 9 C 0.16 6.85 5.95 45.04 0.27 7.12 16 10 C -0.06 -2.39 4.92 29.10 0.14 -2.24 16 11 C 0.48 24.40 6.95 87.66 0.61 25.01 16 12 O -0.58 -36.15 13.80 -3.06 -0.04 -36.19 16 13 N -0.44 -21.46 2.83 -613.13 -1.74 -23.19 16 14 C -0.35 -19.44 7.93 84.04 0.67 -18.78 16 15 H 0.08 4.19 7.25 -2.91 -0.02 4.17 16 16 C 0.03 1.43 4.38 84.93 0.37 1.81 16 17 N -0.86 -52.22 11.74 21.66 0.25 -51.96 16 18 Si 0.96 46.43 29.59 68.60 2.03 48.46 16 19 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.25 -11.09 7.11 99.48 0.71 -10.39 16 22 C 0.04 1.41 5.87 44.99 0.26 1.67 16 23 C -0.17 -5.43 9.80 30.59 0.30 -5.13 16 24 C -0.18 -5.47 10.36 30.59 0.32 -5.15 16 25 C -0.16 -6.37 6.32 -20.22 -0.13 -6.49 16 26 C -0.09 -3.23 10.03 22.58 0.23 -3.00 16 27 H 0.07 0.78 7.65 -2.38 -0.02 0.76 16 28 H 0.08 0.71 7.65 -2.39 -0.02 0.69 16 29 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.19 2.28 6.26 -2.91 -0.02 2.26 16 31 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.13 4.25 8.11 -2.39 -0.02 4.23 16 33 H 0.13 4.28 7.57 -2.39 -0.02 4.26 16 34 H 0.26 15.22 8.32 -92.71 -0.77 14.45 16 35 H 0.13 3.99 6.96 -2.39 -0.02 3.97 16 36 H 0.08 3.07 6.72 -2.39 -0.02 3.06 16 37 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 38 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -82.58 345.37 5.29 -77.29 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.08 Total: 18.03 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 4.90 Total: -4.44 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -2.04 Total: -89.38 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.67 Total: -49.96 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -82.58 5.29 -77.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415063704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.750 kcal (2) G-P(sol) polarization free energy of solvation -82.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds