Wall clock time and date at job start Tue Mar 31 2020 11:39:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46499 * 119.99285 * 2 1
4 4 C 1.52997 * 109.47032 * 269.99323 * 3 2 1
5 5 C 1.53003 * 109.47200 * 180.02562 * 4 3 2
6 6 N 1.46507 * 109.47158 * 179.97438 * 5 4 3
7 7 C 1.34516 * 124.46073 * 270.32975 * 6 5 4
8 8 O 1.21451 * 125.71473 * 359.75960 * 7 6 5
9 9 C 1.47821 * 108.58176 * 180.13130 * 7 6 5
10 10 C 1.38557 * 134.30251 * 179.88639 * 9 7 6
11 11 C 1.38612 * 119.72134 * 179.64101 * 10 9 7
12 12 C 1.38226 * 120.45863 * 0.03623 * 11 10 9
13 13 C 1.38612 * 120.46147 * 359.97438 * 12 11 10
14 14 C 1.38567 * 119.71957 * 0.02562 * 13 12 11
15 15 C 1.34525 * 124.45472 * 90.00101 * 6 5 4
16 16 O 1.21439 * 125.71615 * 0.05574 * 15 6 5
17 17 C 1.34769 * 120.00319 * 179.97438 * 2 1 3
18 18 O 1.21689 * 120.00081 * 180.02562 * 17 2 1
19 19 C 1.46372 * 119.99965 * 0.02562 * 17 2 1
20 20 H 1.07999 * 120.00610 * 355.23752 * 19 17 2
21 21 C 1.40057 * 119.99880 * 175.24426 * 19 17 2
22 22 N 1.30665 * 119.99778 * 6.27560 * 21 19 17
23 23 Si 1.86802 * 119.99814 * 186.28385 * 21 19 17
24 24 H 1.48496 * 109.47077 * 94.97940 * 23 21 19
25 25 H 1.48499 * 109.46805 * 214.98004 * 23 21 19
26 26 H 1.48501 * 109.47063 * 334.97567 * 23 21 19
27 27 H 1.08995 * 109.46716 * 90.00841 * 1 2 3
28 28 H 1.09002 * 109.46990 * 210.00295 * 1 2 3
29 29 H 1.08997 * 109.47453 * 330.00097 * 1 2 3
30 30 H 1.09007 * 109.46803 * 149.99626 * 3 2 1
31 31 H 1.09000 * 109.47764 * 29.99916 * 3 2 1
32 32 H 1.08999 * 109.47231 * 60.00198 * 4 3 2
33 33 H 1.09003 * 109.47263 * 300.00096 * 4 3 2
34 34 H 1.09004 * 109.47275 * 60.00519 * 5 4 3
35 35 H 1.08991 * 109.47193 * 299.99842 * 5 4 3
36 36 H 1.07997 * 120.14200 * 359.65704 * 10 9 7
37 37 H 1.08003 * 119.77104 * 180.02562 * 11 10 9
38 38 H 1.07997 * 119.77327 * 180.02562 * 12 11 10
39 39 H 1.07996 * 120.14179 * 179.97438 * 13 12 11
40 40 H 0.97007 * 119.99926 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 6 2.4524 1.7104 -1.4425
5 6 3.2179 3.0352 -1.4425
6 7 3.4626 3.4578 -2.8238
7 6 4.5471 3.1172 -3.5431
8 8 5.4665 2.4249 -3.1551
9 6 4.4371 3.7341 -4.8819
10 6 5.2343 3.7357 -6.0152
11 6 4.8250 4.4309 -7.1423
12 6 3.6283 5.1227 -7.1428
13 6 2.8206 5.1303 -6.0163
14 6 3.2169 4.4397 -4.8822
15 6 2.6293 4.2322 -3.5418
16 8 1.5718 4.6857 -3.1536
17 6 2.1389 -1.1671 0.0005
18 8 3.3558 -1.1670 0.0010
19 6 1.4072 -2.4348 0.0005
20 1 0.3299 -2.4365 0.0778
21 6 2.1039 -3.6456 -0.0995
22 7 3.4102 -3.6520 -0.0693
23 14 1.1658 -5.2512 -0.2764
24 1 1.0552 -5.6040 -1.7146
25 1 1.8898 -6.3294 0.4436
26 1 -0.1935 -5.0965 0.3014
27 1 -0.3632 -0.0002 -1.0276
28 1 -0.3633 -0.8900 0.5139
29 1 -0.3634 0.8899 0.5138
30 1 3.1498 1.1385 0.5139
31 1 1.6083 2.0285 0.5138
32 1 1.5001 1.8406 -1.9564
33 1 3.0417 0.9508 -1.9562
34 1 4.1703 2.9046 -0.9288
35 1 2.6291 3.7950 -0.9287
36 1 6.1704 3.1972 -6.0205
37 1 5.4455 4.4323 -8.0263
38 1 3.3200 5.6603 -8.0272
39 1 1.8869 5.6729 -6.0222
40 1 3.8929 -4.4906 -0.1389
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000425126508.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:39:10
Heat of formation + Delta-G solvation = -48.997178 kcal
Electronic energy + Delta-G solvation = -25493.822119 eV
Core-core repulsion = 21660.830194 eV
Total energy + Delta-G solvation = -3832.991924 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.126 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-42.41718 -38.79316 -38.67063 -37.77230 -36.02527 -34.51824 -33.02856 -32.42140
-31.48470 -30.72034 -27.24611 -25.92076 -25.27031 -24.91468 -23.15037 -22.38389
-21.57505 -19.98130 -19.08231 -17.98403 -17.36405 -16.67132 -16.49964 -16.30679
-15.61160 -15.46548 -14.99718 -14.65467 -14.48249 -14.34737 -14.29914 -14.03907
-13.82109 -13.75721 -13.14816 -12.68721 -12.50552 -12.17746 -12.04504 -11.60930
-11.55838 -11.42213 -11.32372 -11.11663 -10.93148 -10.60925 -10.45012 -10.32307
-10.16615 -10.05993 -9.85012 -9.57863 -9.51525 -8.83040 -7.56228 -7.22460
-6.18365 -4.62457 -0.18437 0.62263 1.79793 2.25729 2.85798 3.14576
3.21678 3.24995 3.27661 3.40849 4.09445 4.12144 4.27277 4.49105
4.57251 4.57370 4.69503 4.86132 4.94591 5.10624 5.29411 5.35153
5.41270 5.52638 5.58943 5.69208 5.71476 5.76946 5.81177 5.96946
6.06846 6.12113 6.21797 6.44605 6.46650 6.56152 6.67926 6.75548
7.11028 7.46755 7.58213 7.64426 8.15734 8.36672 9.03988 9.43606
10.59229 10.78027
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.017794 B = 0.002994 C = 0.002835
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1573.162348 B = 9351.099033 C = 9873.657049
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.103 3.897
2 N -0.649 5.649
3 C 0.134 3.866
4 C -0.149 4.149
5 C 0.114 3.886
6 N -0.572 5.572
7 C 0.568 3.432
8 O -0.449 6.449
9 C -0.135 4.135
10 C -0.047 4.047
11 C -0.097 4.097
12 C -0.100 4.100
13 C -0.047 4.047
14 C -0.139 4.139
15 C 0.574 3.426
16 O -0.464 6.464
17 C 0.555 3.445
18 O -0.575 6.575
19 C -0.544 4.544
20 H 0.072 0.928
21 C 0.087 3.913
22 N -0.766 5.766
23 Si 0.906 3.094
24 H -0.273 1.273
25 H -0.279 1.279
26 H -0.264 1.264
27 H 0.029 0.971
28 H 0.072 0.928
29 H 0.041 0.959
30 H 0.076 0.924
31 H 0.055 0.945
32 H 0.062 0.938
33 H 0.075 0.925
34 H 0.099 0.901
35 H 0.095 0.905
36 H 0.143 0.857
37 H 0.141 0.859
38 H 0.141 0.859
39 H 0.141 0.859
40 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.468 18.461 -13.516 22.885
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.041 4.041
2 N -0.387 5.387
3 C 0.009 3.991
4 C -0.189 4.189
5 C -0.006 4.006
6 N -0.314 5.314
7 C 0.356 3.644
8 O -0.319 6.319
9 C -0.139 4.139
10 C -0.066 4.066
11 C -0.116 4.116
12 C -0.118 4.118
13 C -0.066 4.066
14 C -0.143 4.143
15 C 0.363 3.637
16 O -0.336 6.336
17 C 0.361 3.639
18 O -0.457 6.457
19 C -0.581 4.581
20 H 0.091 0.909
21 C -0.133 4.133
22 N -0.394 5.394
23 Si 0.731 3.269
24 H -0.198 1.198
25 H -0.204 1.204
26 H -0.189 1.189
27 H 0.048 0.952
28 H 0.090 0.910
29 H 0.060 0.940
30 H 0.094 0.906
31 H 0.074 0.926
32 H 0.080 0.920
33 H 0.094 0.906
34 H 0.117 0.883
35 H 0.113 0.887
36 H 0.160 0.840
37 H 0.159 0.841
38 H 0.158 0.842
39 H 0.159 0.841
40 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 0.298 18.172 -12.959 22.321
hybrid contribution -0.633 -0.840 -0.189 1.069
sum -0.336 17.332 -13.147 21.757
Atomic orbital electron populations
1.21397 0.82139 1.01048 0.99562 1.47982 1.05186 1.05280 1.80204
1.20838 0.98102 0.86755 0.93452 1.22379 1.00122 0.95358 1.01026
1.21858 1.02873 0.97971 0.77878 1.46639 1.21362 1.47293 1.16080
1.18392 0.81474 0.79410 0.85102 1.90870 1.32933 1.33015 1.75050
1.20667 0.96949 1.00820 0.95419 1.20839 0.99071 0.96423 0.90244
1.21462 0.96489 0.95613 0.97993 1.21448 0.94049 0.98283 0.98014
1.20798 0.99677 0.95822 0.90288 1.20650 0.96614 1.01622 0.95399
1.18347 0.83193 0.77129 0.85052 1.90794 1.19796 1.47628 1.75379
1.18281 0.87024 0.82291 0.76346 1.90607 1.13960 1.86255 1.54867
1.21015 0.93993 0.89336 1.53762 0.90947 1.25743 0.94605 1.00235
0.92708 1.70031 1.07215 1.27196 1.34994 0.86383 0.80293 0.81445
0.78797 1.19830 1.20444 1.18856 0.95233 0.90979 0.94040 0.90608
0.92631 0.91966 0.90637 0.88315 0.88704 0.83954 0.84116 0.84155
0.84083 0.92121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.96 10.22 59.85 0.61 2.58 16
2 N -0.65 -15.11 2.87 -183.25 -0.53 -15.64 16
3 C 0.13 2.62 5.45 -4.04 -0.02 2.60 16
4 C -0.15 -2.72 5.86 -26.73 -0.16 -2.87 16
5 C 0.11 1.70 5.74 -4.04 -0.02 1.68 16
6 N -0.57 -8.45 2.62 -117.61 -0.31 -8.76 16
7 C 0.57 8.60 8.02 -12.46 -0.10 8.50 16
8 O -0.45 -8.22 17.68 5.41 0.10 -8.13 16
9 C -0.13 -1.59 6.41 -104.83 -0.67 -2.26 16
10 C -0.05 -0.41 10.09 -39.33 -0.40 -0.80 16
11 C -0.10 -0.58 10.04 -39.45 -0.40 -0.97 16
12 C -0.10 -0.57 10.04 -39.45 -0.40 -0.96 16
13 C -0.05 -0.38 10.09 -39.32 -0.40 -0.77 16
14 C -0.14 -1.57 6.41 -104.83 -0.67 -2.24 16
15 C 0.57 7.99 8.02 -12.46 -0.10 7.89 16
16 O -0.46 -7.29 17.68 5.42 0.10 -7.19 16
17 C 0.55 16.11 7.61 -12.99 -0.10 16.01 16
18 O -0.57 -18.86 14.62 5.20 0.08 -18.78 16
19 C -0.54 -15.56 8.76 -35.63 -0.31 -15.87 16
20 H 0.07 1.89 5.96 -52.49 -0.31 1.58 16
21 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16
22 N -0.77 -23.32 11.85 55.55 0.66 -22.66 16
23 Si 0.91 20.41 29.56 -169.99 -5.03 15.38 16
24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
26 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16
27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
28 H 0.07 1.41 6.04 -51.93 -0.31 1.10 16
29 H 0.04 0.65 7.89 -51.93 -0.41 0.24 16
30 H 0.08 1.63 7.42 -51.93 -0.39 1.24 16
31 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16
32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
33 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16
34 H 0.10 1.46 7.97 -51.93 -0.41 1.05 16
35 H 0.09 1.21 7.97 -51.93 -0.41 0.80 16
36 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16
37 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16
38 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16
39 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16
40 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16
LS Contribution 352.54 15.07 5.31 5.31
Total: -1.00 -38.05 352.54 -7.60 -45.65
By element:
Atomic # 1 Polarization: 4.70 SS G_CDS: -4.75 Total: -0.05 kcal
Atomic # 6 Polarization: 18.09 SS G_CDS: -3.22 Total: 14.87 kcal
Atomic # 7 Polarization: -46.88 SS G_CDS: -0.18 Total: -47.06 kcal
Atomic # 8 Polarization: -34.37 SS G_CDS: 0.27 Total: -34.10 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -38.05 -7.60 -45.65 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000425126508.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.348 kcal
(2) G-P(sol) polarization free energy of solvation -38.050 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.398 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.649 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds