Wall clock time and date at job start Tue Mar 31 2020 11:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99285 * 2 1 4 4 C 1.52997 * 109.47032 * 269.99323 * 3 2 1 5 5 C 1.53003 * 109.47200 * 180.02562 * 4 3 2 6 6 N 1.46507 * 109.47158 * 179.97438 * 5 4 3 7 7 C 1.34516 * 124.46073 * 270.32975 * 6 5 4 8 8 O 1.21451 * 125.71473 * 359.75960 * 7 6 5 9 9 C 1.47821 * 108.58176 * 180.13130 * 7 6 5 10 10 C 1.38557 * 134.30251 * 179.88639 * 9 7 6 11 11 C 1.38612 * 119.72134 * 179.64101 * 10 9 7 12 12 C 1.38226 * 120.45863 * 0.03623 * 11 10 9 13 13 C 1.38612 * 120.46147 * 359.97438 * 12 11 10 14 14 C 1.38567 * 119.71957 * 0.02562 * 13 12 11 15 15 C 1.34525 * 124.45472 * 90.00101 * 6 5 4 16 16 O 1.21439 * 125.71615 * 0.05574 * 15 6 5 17 17 C 1.34769 * 120.00319 * 179.97438 * 2 1 3 18 18 O 1.21689 * 120.00081 * 180.02562 * 17 2 1 19 19 C 1.46372 * 119.99965 * 0.02562 * 17 2 1 20 20 H 1.07999 * 120.00610 * 355.23752 * 19 17 2 21 21 C 1.40057 * 119.99880 * 175.24426 * 19 17 2 22 22 N 1.30665 * 119.99778 * 6.27560 * 21 19 17 23 23 Si 1.86802 * 119.99814 * 186.28385 * 21 19 17 24 24 H 1.48496 * 109.47077 * 94.97940 * 23 21 19 25 25 H 1.48499 * 109.46805 * 214.98004 * 23 21 19 26 26 H 1.48501 * 109.47063 * 334.97567 * 23 21 19 27 27 H 1.08995 * 109.46716 * 90.00841 * 1 2 3 28 28 H 1.09002 * 109.46990 * 210.00295 * 1 2 3 29 29 H 1.08997 * 109.47453 * 330.00097 * 1 2 3 30 30 H 1.09007 * 109.46803 * 149.99626 * 3 2 1 31 31 H 1.09000 * 109.47764 * 29.99916 * 3 2 1 32 32 H 1.08999 * 109.47231 * 60.00198 * 4 3 2 33 33 H 1.09003 * 109.47263 * 300.00096 * 4 3 2 34 34 H 1.09004 * 109.47275 * 60.00519 * 5 4 3 35 35 H 1.08991 * 109.47193 * 299.99842 * 5 4 3 36 36 H 1.07997 * 120.14200 * 359.65704 * 10 9 7 37 37 H 1.08003 * 119.77104 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.77327 * 180.02562 * 12 11 10 39 39 H 1.07996 * 120.14179 * 179.97438 * 13 12 11 40 40 H 0.97007 * 119.99926 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2179 3.0352 -1.4425 6 7 3.4626 3.4578 -2.8238 7 6 4.5471 3.1172 -3.5431 8 8 5.4665 2.4249 -3.1551 9 6 4.4371 3.7341 -4.8819 10 6 5.2343 3.7357 -6.0152 11 6 4.8250 4.4309 -7.1423 12 6 3.6283 5.1227 -7.1428 13 6 2.8206 5.1303 -6.0163 14 6 3.2169 4.4397 -4.8822 15 6 2.6293 4.2322 -3.5418 16 8 1.5718 4.6857 -3.1536 17 6 2.1389 -1.1671 0.0005 18 8 3.3558 -1.1670 0.0010 19 6 1.4072 -2.4348 0.0005 20 1 0.3299 -2.4365 0.0778 21 6 2.1039 -3.6456 -0.0995 22 7 3.4102 -3.6520 -0.0693 23 14 1.1658 -5.2512 -0.2764 24 1 1.0552 -5.6040 -1.7146 25 1 1.8898 -6.3294 0.4436 26 1 -0.1935 -5.0965 0.3014 27 1 -0.3632 -0.0002 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 3.1498 1.1385 0.5139 31 1 1.6083 2.0285 0.5138 32 1 1.5001 1.8406 -1.9564 33 1 3.0417 0.9508 -1.9562 34 1 4.1703 2.9046 -0.9288 35 1 2.6291 3.7950 -0.9287 36 1 6.1704 3.1972 -6.0205 37 1 5.4455 4.4323 -8.0263 38 1 3.3200 5.6603 -8.0272 39 1 1.8869 5.6729 -6.0222 40 1 3.8929 -4.4906 -0.1389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425126508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:10 Heat of formation + Delta-G solvation = -48.997178 kcal Electronic energy + Delta-G solvation = -25493.822119 eV Core-core repulsion = 21660.830194 eV Total energy + Delta-G solvation = -3832.991924 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41718 -38.79316 -38.67063 -37.77230 -36.02527 -34.51824 -33.02856 -32.42140 -31.48470 -30.72034 -27.24611 -25.92076 -25.27031 -24.91468 -23.15037 -22.38389 -21.57505 -19.98130 -19.08231 -17.98403 -17.36405 -16.67132 -16.49964 -16.30679 -15.61160 -15.46548 -14.99718 -14.65467 -14.48249 -14.34737 -14.29914 -14.03907 -13.82109 -13.75721 -13.14816 -12.68721 -12.50552 -12.17746 -12.04504 -11.60930 -11.55838 -11.42213 -11.32372 -11.11663 -10.93148 -10.60925 -10.45012 -10.32307 -10.16615 -10.05993 -9.85012 -9.57863 -9.51525 -8.83040 -7.56228 -7.22460 -6.18365 -4.62457 -0.18437 0.62263 1.79793 2.25729 2.85798 3.14576 3.21678 3.24995 3.27661 3.40849 4.09445 4.12144 4.27277 4.49105 4.57251 4.57370 4.69503 4.86132 4.94591 5.10624 5.29411 5.35153 5.41270 5.52638 5.58943 5.69208 5.71476 5.76946 5.81177 5.96946 6.06846 6.12113 6.21797 6.44605 6.46650 6.56152 6.67926 6.75548 7.11028 7.46755 7.58213 7.64426 8.15734 8.36672 9.03988 9.43606 10.59229 10.78027 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002994 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.162348 B = 9351.099033 C = 9873.657049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.649 5.649 3 C 0.134 3.866 4 C -0.149 4.149 5 C 0.114 3.886 6 N -0.572 5.572 7 C 0.568 3.432 8 O -0.449 6.449 9 C -0.135 4.135 10 C -0.047 4.047 11 C -0.097 4.097 12 C -0.100 4.100 13 C -0.047 4.047 14 C -0.139 4.139 15 C 0.574 3.426 16 O -0.464 6.464 17 C 0.555 3.445 18 O -0.575 6.575 19 C -0.544 4.544 20 H 0.072 0.928 21 C 0.087 3.913 22 N -0.766 5.766 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.264 1.264 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 18.461 -13.516 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.387 5.387 3 C 0.009 3.991 4 C -0.189 4.189 5 C -0.006 4.006 6 N -0.314 5.314 7 C 0.356 3.644 8 O -0.319 6.319 9 C -0.139 4.139 10 C -0.066 4.066 11 C -0.116 4.116 12 C -0.118 4.118 13 C -0.066 4.066 14 C -0.143 4.143 15 C 0.363 3.637 16 O -0.336 6.336 17 C 0.361 3.639 18 O -0.457 6.457 19 C -0.581 4.581 20 H 0.091 0.909 21 C -0.133 4.133 22 N -0.394 5.394 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.189 1.189 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.298 18.172 -12.959 22.321 hybrid contribution -0.633 -0.840 -0.189 1.069 sum -0.336 17.332 -13.147 21.757 Atomic orbital electron populations 1.21397 0.82139 1.01048 0.99562 1.47982 1.05186 1.05280 1.80204 1.20838 0.98102 0.86755 0.93452 1.22379 1.00122 0.95358 1.01026 1.21858 1.02873 0.97971 0.77878 1.46639 1.21362 1.47293 1.16080 1.18392 0.81474 0.79410 0.85102 1.90870 1.32933 1.33015 1.75050 1.20667 0.96949 1.00820 0.95419 1.20839 0.99071 0.96423 0.90244 1.21462 0.96489 0.95613 0.97993 1.21448 0.94049 0.98283 0.98014 1.20798 0.99677 0.95822 0.90288 1.20650 0.96614 1.01622 0.95399 1.18347 0.83193 0.77129 0.85052 1.90794 1.19796 1.47628 1.75379 1.18281 0.87024 0.82291 0.76346 1.90607 1.13960 1.86255 1.54867 1.21015 0.93993 0.89336 1.53762 0.90947 1.25743 0.94605 1.00235 0.92708 1.70031 1.07215 1.27196 1.34994 0.86383 0.80293 0.81445 0.78797 1.19830 1.20444 1.18856 0.95233 0.90979 0.94040 0.90608 0.92631 0.91966 0.90637 0.88315 0.88704 0.83954 0.84116 0.84155 0.84083 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.96 10.22 59.85 0.61 2.58 16 2 N -0.65 -15.11 2.87 -183.25 -0.53 -15.64 16 3 C 0.13 2.62 5.45 -4.04 -0.02 2.60 16 4 C -0.15 -2.72 5.86 -26.73 -0.16 -2.87 16 5 C 0.11 1.70 5.74 -4.04 -0.02 1.68 16 6 N -0.57 -8.45 2.62 -117.61 -0.31 -8.76 16 7 C 0.57 8.60 8.02 -12.46 -0.10 8.50 16 8 O -0.45 -8.22 17.68 5.41 0.10 -8.13 16 9 C -0.13 -1.59 6.41 -104.83 -0.67 -2.26 16 10 C -0.05 -0.41 10.09 -39.33 -0.40 -0.80 16 11 C -0.10 -0.58 10.04 -39.45 -0.40 -0.97 16 12 C -0.10 -0.57 10.04 -39.45 -0.40 -0.96 16 13 C -0.05 -0.38 10.09 -39.32 -0.40 -0.77 16 14 C -0.14 -1.57 6.41 -104.83 -0.67 -2.24 16 15 C 0.57 7.99 8.02 -12.46 -0.10 7.89 16 16 O -0.46 -7.29 17.68 5.42 0.10 -7.19 16 17 C 0.55 16.11 7.61 -12.99 -0.10 16.01 16 18 O -0.57 -18.86 14.62 5.20 0.08 -18.78 16 19 C -0.54 -15.56 8.76 -35.63 -0.31 -15.87 16 20 H 0.07 1.89 5.96 -52.49 -0.31 1.58 16 21 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 22 N -0.77 -23.32 11.85 55.55 0.66 -22.66 16 23 Si 0.91 20.41 29.56 -169.99 -5.03 15.38 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.41 6.04 -51.93 -0.31 1.10 16 29 H 0.04 0.65 7.89 -51.93 -0.41 0.24 16 30 H 0.08 1.63 7.42 -51.93 -0.39 1.24 16 31 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.10 1.46 7.97 -51.93 -0.41 1.05 16 35 H 0.09 1.21 7.97 -51.93 -0.41 0.80 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 38 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 39 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -38.05 352.54 -7.60 -45.65 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.75 Total: -0.05 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: -3.22 Total: 14.87 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.18 Total: -47.06 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: 0.27 Total: -34.10 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.05 -7.60 -45.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425126508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.348 kcal (2) G-P(sol) polarization free energy of solvation -38.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds