Wall clock time and date at job start Tue Mar 31 2020 11:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99285 * 2 1 4 4 C 1.52997 * 109.47032 * 269.99323 * 3 2 1 5 5 C 1.53003 * 109.47200 * 180.02562 * 4 3 2 6 6 N 1.46507 * 109.47158 * 179.97438 * 5 4 3 7 7 C 1.34516 * 124.46073 * 270.32975 * 6 5 4 8 8 O 1.21451 * 125.71473 * 359.75960 * 7 6 5 9 9 C 1.47821 * 108.58176 * 180.13130 * 7 6 5 10 10 C 1.38557 * 134.30251 * 179.88639 * 9 7 6 11 11 C 1.38612 * 119.72134 * 179.64101 * 10 9 7 12 12 C 1.38226 * 120.45863 * 0.03623 * 11 10 9 13 13 C 1.38612 * 120.46147 * 359.97438 * 12 11 10 14 14 C 1.38567 * 119.71957 * 0.02562 * 13 12 11 15 15 C 1.34525 * 124.45472 * 90.00101 * 6 5 4 16 16 O 1.21439 * 125.71615 * 0.05574 * 15 6 5 17 17 C 1.34769 * 120.00319 * 179.97438 * 2 1 3 18 18 O 1.21689 * 120.00081 * 180.02562 * 17 2 1 19 19 C 1.46372 * 119.99965 * 0.02562 * 17 2 1 20 20 H 1.07999 * 120.00610 * 355.23752 * 19 17 2 21 21 C 1.40057 * 119.99880 * 175.24426 * 19 17 2 22 22 N 1.30665 * 119.99778 * 6.27560 * 21 19 17 23 23 Si 1.86802 * 119.99814 * 186.28385 * 21 19 17 24 24 H 1.48496 * 109.47077 * 94.97940 * 23 21 19 25 25 H 1.48499 * 109.46805 * 214.98004 * 23 21 19 26 26 H 1.48501 * 109.47063 * 334.97567 * 23 21 19 27 27 H 1.08995 * 109.46716 * 90.00841 * 1 2 3 28 28 H 1.09002 * 109.46990 * 210.00295 * 1 2 3 29 29 H 1.08997 * 109.47453 * 330.00097 * 1 2 3 30 30 H 1.09007 * 109.46803 * 149.99626 * 3 2 1 31 31 H 1.09000 * 109.47764 * 29.99916 * 3 2 1 32 32 H 1.08999 * 109.47231 * 60.00198 * 4 3 2 33 33 H 1.09003 * 109.47263 * 300.00096 * 4 3 2 34 34 H 1.09004 * 109.47275 * 60.00519 * 5 4 3 35 35 H 1.08991 * 109.47193 * 299.99842 * 5 4 3 36 36 H 1.07997 * 120.14200 * 359.65704 * 10 9 7 37 37 H 1.08003 * 119.77104 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.77327 * 180.02562 * 12 11 10 39 39 H 1.07996 * 120.14179 * 179.97438 * 13 12 11 40 40 H 0.97007 * 119.99926 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2179 3.0352 -1.4425 6 7 3.4626 3.4578 -2.8238 7 6 4.5471 3.1172 -3.5431 8 8 5.4665 2.4249 -3.1551 9 6 4.4371 3.7341 -4.8819 10 6 5.2343 3.7357 -6.0152 11 6 4.8250 4.4309 -7.1423 12 6 3.6283 5.1227 -7.1428 13 6 2.8206 5.1303 -6.0163 14 6 3.2169 4.4397 -4.8822 15 6 2.6293 4.2322 -3.5418 16 8 1.5718 4.6857 -3.1536 17 6 2.1389 -1.1671 0.0005 18 8 3.3558 -1.1670 0.0010 19 6 1.4072 -2.4348 0.0005 20 1 0.3299 -2.4365 0.0778 21 6 2.1039 -3.6456 -0.0995 22 7 3.4102 -3.6520 -0.0693 23 14 1.1658 -5.2512 -0.2764 24 1 1.0552 -5.6040 -1.7146 25 1 1.8898 -6.3294 0.4436 26 1 -0.1935 -5.0965 0.3014 27 1 -0.3632 -0.0002 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 3.1498 1.1385 0.5139 31 1 1.6083 2.0285 0.5138 32 1 1.5001 1.8406 -1.9564 33 1 3.0417 0.9508 -1.9562 34 1 4.1703 2.9046 -0.9288 35 1 2.6291 3.7950 -0.9287 36 1 6.1704 3.1972 -6.0205 37 1 5.4455 4.4323 -8.0263 38 1 3.3200 5.6603 -8.0272 39 1 1.8869 5.6729 -6.0222 40 1 3.8929 -4.4906 -0.1389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425126508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:10 Heat of formation + Delta-G solvation = -75.699590 kcal Electronic energy + Delta-G solvation = -25494.980022 eV Core-core repulsion = 21660.830194 eV Total energy + Delta-G solvation = -3834.149828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.44739 -39.86377 -39.85907 -39.45964 -37.30763 -36.29173 -34.63396 -34.39766 -32.13644 -31.87376 -28.91998 -27.72731 -26.44422 -26.25258 -24.37002 -23.24944 -22.93563 -21.11299 -20.91758 -18.87722 -18.55788 -18.37427 -17.78103 -17.72737 -17.26668 -16.51270 -16.26748 -16.17402 -15.75297 -15.49272 -15.43493 -15.40825 -15.25123 -15.05686 -14.38744 -13.99299 -13.59327 -13.48038 -13.25890 -13.19822 -13.09093 -13.06777 -12.96549 -12.77360 -12.61472 -12.25089 -12.02351 -11.80822 -11.64724 -11.48846 -11.10182 -10.95342 -10.23595 -10.21944 -9.81847 -9.15676 -8.31961 -6.86701 -1.05883 -0.02514 0.94194 1.16983 1.37021 1.38624 1.54638 1.75546 2.21783 2.43430 2.54559 2.61049 2.82597 3.15750 3.56230 3.57868 3.69140 3.92068 4.01592 4.05322 4.16983 4.17761 4.21047 4.26463 4.44989 4.48193 4.58026 4.61831 4.82993 4.83601 4.87181 4.96000 4.98521 5.12662 5.20614 5.25786 5.35258 5.51605 5.69538 5.73315 6.02296 6.12204 6.36716 6.46059 6.85041 7.37727 8.44463 8.64984 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002994 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.162348 B = 9351.099033 C = 9873.657049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.653 5.653 3 C 0.132 3.868 4 C -0.130 4.130 5 C 0.119 3.881 6 N -0.580 5.580 7 C 0.561 3.439 8 O -0.501 6.501 9 C -0.163 4.163 10 C -0.050 4.050 11 C -0.081 4.081 12 C -0.080 4.080 13 C -0.041 4.041 14 C -0.159 4.159 15 C 0.573 3.427 16 O -0.487 6.487 17 C 0.535 3.465 18 O -0.630 6.630 19 C -0.570 4.570 20 H 0.094 0.906 21 C 0.026 3.974 22 N -0.823 5.823 23 Si 0.998 3.002 24 H -0.265 1.265 25 H -0.272 1.272 26 H -0.244 1.244 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.148 0.852 37 H 0.182 0.818 38 H 0.186 0.814 39 H 0.161 0.839 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 19.993 -16.237 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.389 5.389 3 C 0.008 3.992 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.321 5.321 7 C 0.353 3.647 8 O -0.375 6.375 9 C -0.166 4.166 10 C -0.068 4.068 11 C -0.099 4.099 12 C -0.097 4.097 13 C -0.060 4.060 14 C -0.162 4.162 15 C 0.365 3.635 16 O -0.360 6.360 17 C 0.341 3.659 18 O -0.517 6.517 19 C -0.606 4.606 20 H 0.112 0.888 21 C -0.189 4.189 22 N -0.452 5.452 23 Si 0.817 3.183 24 H -0.190 1.190 25 H -0.197 1.197 26 H -0.167 1.167 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.110 0.890 35 H 0.142 0.858 36 H 0.166 0.834 37 H 0.200 0.800 38 H 0.203 0.797 39 H 0.178 0.822 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.102 19.773 -15.691 25.330 hybrid contribution 0.089 -1.167 0.547 1.292 sum -2.013 18.606 -15.144 24.074 Atomic orbital electron populations 1.21593 0.79249 1.02822 1.00645 1.47880 1.07159 1.05011 1.78868 1.21019 0.97415 0.86424 0.94364 1.22115 0.99747 0.95597 0.99565 1.21734 1.02521 0.96938 0.78981 1.46731 1.21841 1.47548 1.16020 1.19100 0.80619 0.78400 0.86616 1.90825 1.34694 1.35560 1.76378 1.20515 0.98727 1.02735 0.94643 1.21177 0.98952 0.96566 0.90137 1.21965 0.96780 0.93340 0.97798 1.22004 0.92799 0.96705 0.98231 1.21214 1.00648 0.94554 0.89571 1.20550 0.96553 1.03991 0.95150 1.18791 0.82595 0.76124 0.86037 1.90762 1.20580 1.48569 1.76131 1.18727 0.86690 0.84398 0.76096 1.90556 1.16294 1.87589 1.57272 1.21556 0.95199 0.89890 1.53992 0.88780 1.27063 0.95529 1.04986 0.91349 1.70216 1.09824 1.28815 1.36364 0.85014 0.79136 0.75065 0.79126 1.18998 1.19682 1.16709 0.94374 0.91599 0.89864 0.93434 0.87844 0.91426 0.95864 0.89032 0.85824 0.83392 0.80050 0.79675 0.82170 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.67 10.22 127.77 1.31 4.98 16 2 N -0.65 -31.12 2.87 -851.90 -2.45 -33.56 16 3 C 0.13 5.34 5.45 86.38 0.47 5.81 16 4 C -0.13 -5.04 5.86 30.59 0.18 -4.86 16 5 C 0.12 3.75 5.74 86.38 0.50 4.24 16 6 N -0.58 -18.24 2.62 -762.95 -2.00 -20.24 16 7 C 0.56 18.49 8.02 86.82 0.70 19.19 16 8 O -0.50 -20.38 17.68 -3.56 -0.06 -20.44 16 9 C -0.16 -3.89 6.41 -20.00 -0.13 -4.02 16 10 C -0.05 -0.79 10.09 22.44 0.23 -0.56 16 11 C -0.08 -0.61 10.04 22.36 0.22 -0.38 16 12 C -0.08 -0.50 10.04 22.36 0.22 -0.27 16 13 C -0.04 -0.53 10.09 22.44 0.23 -0.30 16 14 C -0.16 -3.47 6.41 -20.00 -0.13 -3.60 16 15 C 0.57 16.26 8.02 86.82 0.70 16.95 16 16 O -0.49 -15.20 17.68 -3.52 -0.06 -15.26 16 17 C 0.53 32.54 7.61 86.36 0.66 33.19 16 18 O -0.63 -44.28 14.62 -4.31 -0.06 -44.35 16 19 C -0.57 -33.33 8.76 24.83 0.22 -33.11 16 20 H 0.09 4.90 5.96 -2.91 -0.02 4.88 16 21 C 0.03 1.48 5.49 85.31 0.47 1.94 16 22 N -0.82 -52.36 11.85 21.84 0.26 -52.10 16 23 Si 1.00 42.19 29.56 68.60 2.03 44.22 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.24 -9.43 7.11 99.48 0.71 -8.72 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 2.50 6.04 -2.39 -0.01 2.49 16 29 H 0.08 2.37 7.89 -2.39 -0.02 2.35 16 30 H 0.05 2.18 7.42 -2.38 -0.02 2.17 16 31 H 0.10 3.17 7.89 -2.39 -0.02 3.15 16 32 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 2.99 7.97 -2.39 -0.02 2.97 16 35 H 0.12 3.15 7.97 -2.39 -0.02 3.14 16 36 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.18 -0.04 8.06 -2.91 -0.02 -0.06 16 38 H 0.19 -0.37 8.06 -2.91 -0.02 -0.40 16 39 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.27 15.77 8.29 -92.70 -0.77 15.00 16 Total: -1.00 -92.23 352.54 4.56 -87.67 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.07 Total: 14.86 kcal Atomic # 6 Polarization: 33.37 SS G_CDS: 5.83 Total: 39.20 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -4.19 Total: -105.91 kcal Atomic # 8 Polarization: -79.86 SS G_CDS: -0.19 Total: -80.05 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -92.23 4.56 -87.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425126508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.968 kcal (2) G-P(sol) polarization free energy of solvation -92.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds