Wall clock time and date at job start Tue Mar 31 2020 11:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 120.00220 * 2 1 4 4 C 1.50693 * 109.47501 * 272.77826 * 3 2 1 5 5 C 1.38259 * 120.00025 * 355.86784 * 4 3 2 6 6 C 1.38209 * 120.00051 * 179.97438 * 5 4 3 7 7 C 1.38260 * 120.00223 * 359.97438 * 6 5 4 8 8 C 1.38208 * 119.99734 * 359.97201 * 7 6 5 9 9 C 1.38211 * 120.00336 * 175.59638 * 4 3 2 10 10 C 1.50698 * 119.99865 * 359.97438 * 9 4 3 11 11 F 1.39899 * 109.47561 * 177.03682 * 10 9 4 12 12 F 1.39903 * 109.47193 * 297.03470 * 10 9 4 13 13 F 1.39907 * 109.47514 * 57.03336 * 10 9 4 14 14 C 1.34778 * 119.99693 * 179.97438 * 2 1 3 15 15 O 1.21588 * 119.99687 * 179.97438 * 14 2 1 16 16 N 1.34777 * 120.00042 * 0.02562 * 14 2 1 17 17 C 1.46503 * 119.99735 * 179.97438 * 16 14 2 18 18 C 1.50698 * 109.46931 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00154 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00075 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99745 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00233 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47248 * 89.99257 * 22 20 18 24 24 H 1.48490 * 109.47149 * 209.99703 * 22 20 18 25 25 H 1.48506 * 109.46756 * 329.99613 * 22 20 18 26 26 H 1.09003 * 109.47157 * 95.30376 * 1 2 3 27 27 H 1.08994 * 109.47187 * 215.30809 * 1 2 3 28 28 H 1.08997 * 109.46992 * 335.30889 * 1 2 3 29 29 H 1.08997 * 109.47323 * 152.77232 * 3 2 1 30 30 H 1.09009 * 109.46678 * 32.78017 * 3 2 1 31 31 H 1.08006 * 119.99822 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.99755 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.99989 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.00108 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99841 * 359.97438 * 16 14 2 36 36 H 1.08998 * 109.47246 * 299.99249 * 17 16 14 37 37 H 1.08999 * 109.46961 * 59.99608 * 17 16 14 38 38 H 0.97001 * 119.99308 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3891 1.7382 -1.4190 5 6 1.9720 0.9451 -2.4719 6 6 2.1472 1.3759 -3.7734 7 6 2.7392 2.6003 -4.0225 8 6 3.1552 3.3936 -2.9700 9 6 2.9768 2.9641 -1.6680 10 6 3.4255 3.8316 -0.5203 11 9 4.0460 4.9817 -1.0197 12 9 2.3159 4.1973 0.2494 13 9 4.3310 3.1212 0.2751 14 6 2.1389 -1.1672 0.0005 15 8 3.3547 -1.1672 0.0001 16 7 1.4649 -2.3344 0.0005 17 6 2.1974 -3.6032 0.0005 18 6 1.2181 -4.7486 0.0012 19 1 0.1563 -4.5512 0.0011 20 6 1.6776 -6.0485 0.0018 21 7 2.9707 -6.2888 0.0014 22 14 0.4637 -7.4683 0.0019 23 1 0.1425 -7.8450 -1.3981 24 1 1.0634 -8.6322 0.7024 25 1 -0.7797 -7.0563 0.7014 26 1 -0.3633 -0.0950 -1.0233 27 1 -0.3633 -0.8386 0.5939 28 1 -0.3633 0.9337 0.4293 29 1 3.1706 1.1264 0.4702 30 1 1.6309 2.0154 0.5565 31 1 1.5091 -0.0112 -2.2773 32 1 1.8217 0.7562 -4.5958 33 1 2.8765 2.9367 -5.0395 34 1 3.6180 4.3498 -3.1646 35 1 0.4949 -2.3343 0.0005 36 1 2.8240 -3.6610 -0.8895 37 1 2.8241 -3.6609 0.8905 38 1 3.2939 -7.2034 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426423015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:55 Heat of formation + Delta-G solvation = -145.669749 kcal Electronic energy + Delta-G solvation = -26650.249231 eV Core-core repulsion = 22271.208529 eV Total energy + Delta-G solvation = -4379.040702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.30847 -47.83663 -47.72363 -40.19846 -38.99036 -35.46791 -34.26041 -32.70852 -32.20242 -31.32620 -27.89042 -27.17622 -26.06771 -25.29572 -22.83357 -22.12278 -21.53607 -19.40178 -18.60184 -18.53769 -18.47234 -17.95599 -16.42188 -16.07738 -15.99557 -15.16221 -15.13161 -14.80581 -14.73863 -14.56945 -14.36989 -14.23541 -13.90512 -13.86477 -13.66508 -13.48511 -13.28537 -13.04408 -12.85439 -12.71478 -12.44485 -12.06450 -11.81253 -11.75869 -11.43643 -11.33102 -10.97206 -10.89838 -10.30885 -9.45099 -9.38336 -9.36303 -8.95138 -8.75347 -8.58684 -7.80958 -6.16751 -4.23627 0.77599 1.11818 2.53114 3.04049 3.23502 3.30064 3.32388 3.34308 3.58381 3.80306 3.89166 4.29682 4.30376 4.53704 4.65224 4.74047 4.83774 5.11782 5.13698 5.19411 5.20060 5.31857 5.41991 5.52809 5.61037 5.72791 5.79770 5.98728 6.15794 6.26491 6.60697 6.66089 7.04141 7.46830 7.49385 7.54897 7.80704 7.99440 8.72034 8.85702 9.26530 9.44772 10.93430 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.003076 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.989335 B = 9102.002390 C = 9421.554418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.640 5.640 3 C 0.155 3.845 4 C -0.041 4.041 5 C -0.102 4.102 6 C -0.084 4.084 7 C -0.130 4.130 8 C -0.073 4.073 9 C -0.187 4.187 10 C 0.508 3.492 11 F -0.179 7.179 12 F -0.178 7.178 13 F -0.172 7.172 14 C 0.693 3.307 15 O -0.591 6.591 16 N -0.726 5.726 17 C 0.266 3.734 18 C -0.542 4.542 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.387 0.613 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 21.440 -5.243 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.379 5.379 3 C 0.031 3.969 4 C -0.043 4.043 5 C -0.120 4.120 6 C -0.102 4.102 7 C -0.148 4.148 8 C -0.091 4.091 9 C -0.189 4.189 10 C 0.454 3.546 11 F -0.160 7.160 12 F -0.159 7.159 13 F -0.153 7.153 14 C 0.394 3.606 15 O -0.469 6.469 16 N -0.379 5.379 17 C 0.145 3.855 18 C -0.581 4.581 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.128 0.872 30 H 0.110 0.890 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.221 0.779 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.764 21.222 -5.180 22.167 hybrid contribution -0.990 -0.689 0.114 1.211 sum -4.754 20.534 -5.066 21.677 Atomic orbital electron populations 1.21732 0.79970 1.03037 1.01633 1.46982 1.06087 1.04606 1.80243 1.20437 0.99685 0.85069 0.91732 1.20253 0.94276 0.91827 0.97918 1.21117 0.99522 0.99903 0.91491 1.21443 0.96022 0.95636 0.97086 1.21119 0.99833 0.94828 0.98976 1.20918 0.97435 1.00038 0.90757 1.19695 1.09089 0.96870 0.93230 1.18329 0.75141 0.78467 0.82642 1.93148 1.83402 1.52183 1.87311 1.93190 1.53188 1.92187 1.77377 1.93247 1.68237 1.78015 1.75781 1.16112 0.85562 0.80434 0.78529 1.90895 1.11639 1.86052 1.58304 1.45861 1.09712 1.05561 1.76787 1.19004 0.92028 0.76810 0.97678 1.21203 0.92925 0.90694 1.53262 0.91996 1.24941 0.95394 0.98894 0.94740 1.69981 1.12564 1.20817 1.48826 0.86417 0.80822 0.81476 0.78192 1.20484 1.21006 1.19765 0.92908 0.91071 0.91040 0.87161 0.88953 0.84665 0.85101 0.85036 0.84639 0.77897 0.95692 0.95693 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 9.78 59.85 0.59 1.46 16 2 N -0.64 -9.70 1.71 -188.74 -0.32 -10.03 16 3 C 0.16 2.17 4.57 -5.20 -0.02 2.15 16 4 C -0.04 -0.55 5.84 -104.63 -0.61 -1.16 16 5 C -0.10 -1.35 9.15 -39.58 -0.36 -1.71 16 6 C -0.08 -0.90 10.05 -39.58 -0.40 -1.30 16 7 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16 8 C -0.07 -0.75 9.43 -39.59 -0.37 -1.12 16 9 C -0.19 -2.25 5.37 -104.63 -0.56 -2.81 16 10 C 0.51 5.96 2.88 36.00 0.10 6.07 16 11 F -0.18 -1.97 15.98 2.25 0.04 -1.93 16 12 F -0.18 -2.01 15.88 2.25 0.04 -1.97 16 13 F -0.17 -2.28 15.65 2.25 0.04 -2.25 16 14 C 0.69 14.16 7.58 -86.92 -0.66 13.50 16 15 O -0.59 -14.68 15.88 5.29 0.08 -14.60 16 16 N -0.73 -15.32 5.41 -66.41 -0.36 -15.68 16 17 C 0.27 7.04 5.43 -5.19 -0.03 7.01 16 18 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 19 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -25.95 13.29 55.43 0.74 -25.22 16 22 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H 0.05 0.52 7.73 -51.93 -0.40 0.12 16 27 H 0.07 0.77 6.65 -51.93 -0.35 0.43 16 28 H 0.07 0.61 7.86 -51.93 -0.41 0.20 16 29 H 0.11 1.80 6.28 -51.93 -0.33 1.47 16 30 H 0.09 1.06 6.63 -51.92 -0.34 0.72 16 31 H 0.14 1.94 5.89 -52.48 -0.31 1.63 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.10 7.16 -52.49 -0.38 0.73 16 35 H 0.39 6.97 6.17 -40.82 -0.25 6.72 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -32.55 332.21 -6.90 -39.45 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.99 Total: 4.34 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -3.14 Total: 7.25 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.05 Total: -50.92 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.08 Total: -14.60 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.11 Total: -6.15 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.55 -6.90 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426423015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.217 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds