Wall clock time and date at job start Tue Mar 31 2020 11:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 120.00220 * 2 1 4 4 C 1.50693 * 109.47501 * 272.77826 * 3 2 1 5 5 C 1.38259 * 120.00025 * 355.86784 * 4 3 2 6 6 C 1.38209 * 120.00051 * 179.97438 * 5 4 3 7 7 C 1.38260 * 120.00223 * 359.97438 * 6 5 4 8 8 C 1.38208 * 119.99734 * 359.97201 * 7 6 5 9 9 C 1.38211 * 120.00336 * 175.59638 * 4 3 2 10 10 C 1.50698 * 119.99865 * 359.97438 * 9 4 3 11 11 F 1.39899 * 109.47561 * 177.03682 * 10 9 4 12 12 F 1.39903 * 109.47193 * 297.03470 * 10 9 4 13 13 F 1.39907 * 109.47514 * 57.03336 * 10 9 4 14 14 C 1.34778 * 119.99693 * 179.97438 * 2 1 3 15 15 O 1.21588 * 119.99687 * 179.97438 * 14 2 1 16 16 N 1.34777 * 120.00042 * 0.02562 * 14 2 1 17 17 C 1.46503 * 119.99735 * 179.97438 * 16 14 2 18 18 C 1.50698 * 109.46931 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00154 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00075 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99745 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00233 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47248 * 89.99257 * 22 20 18 24 24 H 1.48490 * 109.47149 * 209.99703 * 22 20 18 25 25 H 1.48506 * 109.46756 * 329.99613 * 22 20 18 26 26 H 1.09003 * 109.47157 * 95.30376 * 1 2 3 27 27 H 1.08994 * 109.47187 * 215.30809 * 1 2 3 28 28 H 1.08997 * 109.46992 * 335.30889 * 1 2 3 29 29 H 1.08997 * 109.47323 * 152.77232 * 3 2 1 30 30 H 1.09009 * 109.46678 * 32.78017 * 3 2 1 31 31 H 1.08006 * 119.99822 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.99755 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.99989 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.00108 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99841 * 359.97438 * 16 14 2 36 36 H 1.08998 * 109.47246 * 299.99249 * 17 16 14 37 37 H 1.08999 * 109.46961 * 59.99608 * 17 16 14 38 38 H 0.97001 * 119.99308 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3891 1.7382 -1.4190 5 6 1.9720 0.9451 -2.4719 6 6 2.1472 1.3759 -3.7734 7 6 2.7392 2.6003 -4.0225 8 6 3.1552 3.3936 -2.9700 9 6 2.9768 2.9641 -1.6680 10 6 3.4255 3.8316 -0.5203 11 9 4.0460 4.9817 -1.0197 12 9 2.3159 4.1973 0.2494 13 9 4.3310 3.1212 0.2751 14 6 2.1389 -1.1672 0.0005 15 8 3.3547 -1.1672 0.0001 16 7 1.4649 -2.3344 0.0005 17 6 2.1974 -3.6032 0.0005 18 6 1.2181 -4.7486 0.0012 19 1 0.1563 -4.5512 0.0011 20 6 1.6776 -6.0485 0.0018 21 7 2.9707 -6.2888 0.0014 22 14 0.4637 -7.4683 0.0019 23 1 0.1425 -7.8450 -1.3981 24 1 1.0634 -8.6322 0.7024 25 1 -0.7797 -7.0563 0.7014 26 1 -0.3633 -0.0950 -1.0233 27 1 -0.3633 -0.8386 0.5939 28 1 -0.3633 0.9337 0.4293 29 1 3.1706 1.1264 0.4702 30 1 1.6309 2.0154 0.5565 31 1 1.5091 -0.0112 -2.2773 32 1 1.8217 0.7562 -4.5958 33 1 2.8765 2.9367 -5.0395 34 1 3.6180 4.3498 -3.1646 35 1 0.4949 -2.3343 0.0005 36 1 2.8240 -3.6610 -0.8895 37 1 2.8241 -3.6609 0.8905 38 1 3.2939 -7.2034 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426423015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:55 Heat of formation + Delta-G solvation = -165.358567 kcal Electronic energy + Delta-G solvation = -26651.103002 eV Core-core repulsion = 22271.208529 eV Total energy + Delta-G solvation = -4379.894473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.24311 -48.74931 -48.68657 -41.48103 -40.19220 -36.85065 -36.16832 -34.44641 -33.34036 -32.36613 -29.47433 -28.51991 -27.12503 -26.51106 -24.57368 -23.21196 -22.60174 -21.03457 -19.66549 -19.53921 -19.41650 -19.26883 -18.01564 -17.55607 -17.33012 -16.62488 -16.33727 -16.07455 -15.79186 -15.62238 -15.42769 -15.20274 -15.00003 -14.98607 -14.83778 -14.79415 -14.61324 -14.31618 -14.03781 -13.87370 -13.67939 -13.62065 -13.35605 -12.95653 -12.82550 -12.70179 -12.31366 -12.22551 -12.19208 -11.46983 -11.21373 -10.79647 -10.24226 -10.10520 -9.85055 -9.54487 -8.27547 -6.44201 -0.10348 0.24099 1.44140 1.47109 1.57624 1.60814 1.68472 2.16169 2.39197 2.47241 2.66947 2.97914 3.07605 3.20595 3.37235 3.56574 3.83782 4.00178 4.12693 4.26636 4.30406 4.35752 4.47798 4.64167 4.66860 4.84518 4.88612 5.05620 5.12635 5.24913 5.27119 5.39399 5.46423 5.54010 5.68824 5.78575 5.84561 6.04668 6.67109 7.14870 7.26010 7.66208 8.84807 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.003076 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.989335 B = 9102.002390 C = 9421.554418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.626 5.626 3 C 0.155 3.845 4 C -0.059 4.059 5 C -0.124 4.124 6 C -0.086 4.086 7 C -0.119 4.119 8 C -0.072 4.072 9 C -0.196 4.196 10 C 0.510 3.490 11 F -0.173 7.173 12 F -0.175 7.175 13 F -0.185 7.185 14 C 0.692 3.308 15 O -0.642 6.642 16 N -0.719 5.719 17 C 0.286 3.714 18 C -0.554 4.554 19 H 0.084 0.916 20 C 0.005 3.995 21 N -0.931 5.931 22 Si 0.986 3.014 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.255 1.255 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.405 0.595 36 H -0.014 1.014 37 H -0.016 1.016 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 22.597 -6.500 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.363 5.363 3 C 0.032 3.968 4 C -0.061 4.061 5 C -0.142 4.142 6 C -0.104 4.104 7 C -0.137 4.137 8 C -0.090 4.090 9 C -0.198 4.198 10 C 0.456 3.544 11 F -0.154 7.154 12 F -0.157 7.157 13 F -0.166 7.166 14 C 0.393 3.607 15 O -0.524 6.524 16 N -0.374 5.374 17 C 0.163 3.837 18 C -0.591 4.591 19 H 0.102 0.898 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.809 3.191 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.178 1.178 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.169 0.831 33 H 0.185 0.815 34 H 0.177 0.823 35 H 0.242 0.758 36 H 0.004 0.996 37 H 0.001 0.999 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.294 22.452 -6.437 24.190 hybrid contribution -0.192 -0.908 0.460 1.036 sum -6.486 21.544 -5.978 23.280 Atomic orbital electron populations 1.22061 0.76876 1.04962 1.03101 1.46892 1.07865 1.03164 1.78422 1.20506 0.98637 0.84729 0.92964 1.20148 0.95921 0.92806 0.97207 1.21095 1.00869 0.99437 0.92801 1.21726 0.95607 0.96493 0.96541 1.21532 0.97917 0.93737 1.00506 1.21291 0.96645 1.00996 0.90030 1.19783 1.09330 0.96524 0.94155 1.18320 0.74986 0.78544 0.82515 1.93155 1.83317 1.51771 1.87180 1.93189 1.52962 1.92145 1.77360 1.93226 1.68780 1.78424 1.76207 1.16242 0.84977 0.81484 0.77978 1.90853 1.14182 1.87027 1.60378 1.45418 1.10272 1.04374 1.77344 1.18412 0.91836 0.79590 0.93903 1.21575 0.93821 0.90820 1.52932 0.89791 1.26058 0.97347 1.02246 0.93850 1.70151 1.15180 1.21680 1.49932 0.85146 0.78394 0.76992 0.78613 1.19529 1.21093 1.17842 0.91319 0.90778 0.87821 0.90136 0.86318 0.86517 0.83145 0.81468 0.82291 0.75838 0.99637 0.99850 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 9.78 127.77 1.25 2.69 16 2 N -0.63 -19.04 1.71 -869.32 -1.49 -20.53 16 3 C 0.16 4.39 4.57 85.63 0.39 4.78 16 4 C -0.06 -1.56 5.84 -19.87 -0.12 -1.68 16 5 C -0.12 -3.21 9.15 22.27 0.20 -3.01 16 6 C -0.09 -1.69 10.05 22.27 0.22 -1.47 16 7 C -0.12 -1.89 10.05 22.27 0.22 -1.66 16 8 C -0.07 -1.28 9.43 22.27 0.21 -1.07 16 9 C -0.20 -4.49 5.37 -19.87 -0.11 -4.60 16 10 C 0.51 11.54 2.88 71.24 0.21 11.74 16 11 F -0.17 -3.53 15.98 44.97 0.72 -2.81 16 12 F -0.18 -3.74 15.88 44.97 0.71 -3.03 16 13 F -0.18 -5.00 15.65 44.97 0.70 -4.30 16 14 C 0.69 29.44 7.58 179.05 1.36 30.79 16 15 O -0.64 -33.97 15.88 -3.99 -0.06 -34.03 16 16 N -0.72 -31.24 5.41 -482.29 -2.61 -33.85 16 17 C 0.29 15.92 5.43 85.63 0.46 16.39 16 18 C -0.55 -30.02 9.28 25.60 0.24 -29.78 16 19 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 20 C 0.00 0.26 5.46 84.65 0.46 0.72 16 21 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 22 Si 0.99 41.95 29.54 68.60 2.03 43.97 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 26 H 0.07 1.21 7.73 -2.39 -0.02 1.19 16 27 H 0.07 1.47 6.65 -2.39 -0.02 1.45 16 28 H 0.10 1.46 7.86 -2.39 -0.02 1.44 16 29 H 0.08 2.78 6.28 -2.39 -0.02 2.76 16 30 H 0.12 2.62 6.63 -2.38 -0.02 2.60 16 31 H 0.12 3.40 5.89 -2.91 -0.02 3.38 16 32 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.16 2.05 7.16 -2.91 -0.02 2.03 16 35 H 0.40 14.45 6.17 -92.71 -0.57 13.88 16 36 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 38 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -74.73 332.21 5.84 -68.89 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.55 Total: 17.81 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 5.01 Total: 23.85 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -3.81 Total: -110.35 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.06 Total: -34.03 kcal Atomic # 9 Polarization: -12.27 SS G_CDS: 2.14 Total: -10.13 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -74.73 5.84 -68.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426423015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.471 kcal (2) G-P(sol) polarization free energy of solvation -74.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds