Wall clock time and date at job start Tue Mar 31 2020 11:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39518 * 126.27193 * 2 1 4 4 C 1.38592 * 133.30927 * 359.91947 * 3 2 1 5 5 C 1.38359 * 120.16196 * 180.02562 * 4 3 2 6 6 C 1.37976 * 120.38294 * 359.65639 * 5 4 3 7 7 C 1.39641 * 120.14603 * 0.65843 * 6 5 4 8 8 C 1.47582 * 120.20820 * 179.65220 * 7 6 5 9 9 O 1.21576 * 120.00315 * 185.21417 * 8 7 6 10 10 N 1.34782 * 120.00104 * 5.21253 * 8 7 6 11 11 C 1.46494 * 120.00340 * 184.85617 * 10 8 7 12 12 C 1.53000 * 109.47212 * 184.74600 * 11 10 8 13 13 C 1.50698 * 115.55045 * 294.73929 * 12 11 10 14 14 H 1.08000 * 119.99805 * 122.47592 * 13 12 11 15 15 C 1.37872 * 119.99654 * 302.20169 * 13 12 11 16 16 N 1.31517 * 119.99805 * 173.42312 * 15 13 12 17 17 Si 1.86794 * 120.00498 * 353.41861 * 15 13 12 18 18 H 1.48505 * 109.47188 * 94.24462 * 17 15 13 19 19 H 1.48504 * 109.47580 * 214.24607 * 17 15 13 20 20 H 1.48504 * 109.47176 * 334.24663 * 17 15 13 21 21 C 1.53006 * 117.50078 * 80.41079 * 12 11 10 22 22 C 1.53004 * 117.49854 * 149.07156 * 12 11 10 23 23 C 1.39392 * 106.56914 * 179.97438 * 3 2 1 24 24 O 1.35311 * 107.35830 * 359.97438 * 23 3 2 25 25 C 1.34265 * 109.20742 * 359.97438 * 24 23 3 26 26 O 1.21593 * 125.29346 * 180.02562 * 25 24 23 27 27 H 1.08996 * 109.47388 * 89.99920 * 1 2 3 28 28 H 1.09004 * 109.47189 * 210.00399 * 1 2 3 29 29 H 1.09004 * 109.47100 * 329.99616 * 1 2 3 30 30 H 1.07995 * 119.91646 * 0.02923 * 4 3 2 31 31 H 1.07991 * 119.80783 * 180.02562 * 5 4 3 32 32 H 1.08006 * 119.92983 * 180.33785 * 6 5 4 33 33 H 0.97003 * 119.99733 * 4.86199 * 10 8 7 34 34 H 1.08998 * 109.47498 * 64.73951 * 11 10 8 35 35 H 1.09008 * 109.46879 * 304.74421 * 11 10 8 36 36 H 0.97002 * 120.00032 * 180.02562 * 16 15 13 37 37 H 1.08997 * 117.49615 * 215.00163 * 21 12 11 38 38 H 1.09005 * 117.49575 * 0.02562 * 21 12 11 39 39 H 1.09002 * 117.50191 * 359.97139 * 22 12 11 40 40 H 1.08997 * 117.49998 * 144.97654 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2904 1.1248 0.0000 4 6 2.0397 2.4879 -0.0014 5 6 3.0906 3.3879 -0.0015 6 6 4.3948 2.9379 0.0069 7 6 4.6640 1.5677 0.0018 8 6 6.0586 1.0849 0.0031 9 8 6.2903 -0.1044 -0.0971 10 7 7.0755 1.9624 0.1153 11 6 8.4603 1.4963 0.0099 12 6 9.4129 2.6606 0.2889 13 6 9.3767 3.7848 -0.7140 14 1 9.1542 4.7906 -0.3898 15 6 9.6332 3.5301 -2.0444 16 7 9.4756 4.4818 -2.9384 17 14 10.2046 1.8334 -2.5775 18 1 9.0317 1.0257 -2.9985 19 1 11.1498 1.9642 -3.7154 20 1 10.8866 1.1615 -1.4423 21 6 9.6712 3.0270 1.7519 22 6 10.7613 2.3313 0.9326 23 6 3.6027 0.6549 0.0006 24 8 3.5473 -0.6971 0.0015 25 6 2.2624 -1.0866 0.0021 26 8 1.8780 -2.2401 0.0034 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.0217 2.8483 -0.0024 31 1 2.8887 4.4488 -0.0022 32 1 5.2095 3.6470 0.0123 33 1 6.8903 2.9026 0.2659 34 1 8.6393 1.1131 -0.9947 35 1 8.6330 0.7031 0.7373 36 1 9.6557 4.3025 -3.8745 37 1 9.8150 4.0811 1.9888 38 1 9.1628 2.4382 2.5155 39 1 10.9696 1.2853 1.1578 40 1 11.6223 2.9276 0.6305 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431104594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:58 Heat of formation + Delta-G solvation = -37.607560 kcal Electronic energy + Delta-G solvation = -26087.788875 eV Core-core repulsion = 22255.290842 eV Total energy + Delta-G solvation = -3832.498033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.49205 -41.07533 -39.55517 -38.71526 -38.60831 -36.98639 -35.13772 -34.28155 -32.22858 -30.99436 -28.84815 -28.68257 -27.20162 -24.85523 -24.26519 -23.40500 -23.11922 -21.54626 -21.04664 -19.78989 -19.38362 -18.74390 -18.32952 -18.08492 -17.22438 -17.11218 -16.71327 -16.20780 -16.13773 -15.74455 -15.44986 -15.18907 -15.09360 -14.92514 -14.84350 -14.53095 -14.14680 -13.88965 -13.47184 -13.34808 -13.17906 -13.04514 -12.91298 -12.64306 -12.24207 -12.17737 -12.08158 -11.74070 -11.52676 -11.18614 -11.02274 -10.72835 -10.37302 -10.14521 -9.83958 -9.33982 -8.32624 -6.32857 -0.51897 0.00772 0.94238 1.10459 1.27816 1.36938 1.44374 1.65703 1.72753 2.06365 2.31627 2.56773 2.94870 3.16303 3.37772 3.48200 3.67920 3.83545 3.97264 4.06452 4.11550 4.26627 4.32416 4.42812 4.46071 4.49913 4.62713 4.71365 4.76181 4.78228 4.93608 5.03636 5.06034 5.14786 5.22495 5.25011 5.41650 5.48687 5.54456 5.68637 5.97413 6.31016 6.37538 6.54824 6.73919 7.14754 7.34467 8.81171 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018820 B = 0.003660 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.412034 B = 7647.542282 C = 7931.758013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.534 5.534 3 C 0.057 3.943 4 C -0.048 4.048 5 C -0.083 4.083 6 C -0.064 4.064 7 C -0.117 4.117 8 C 0.540 3.460 9 O -0.588 6.588 10 N -0.687 5.687 11 C 0.156 3.844 12 C -0.042 4.042 13 C -0.471 4.471 14 H 0.058 0.942 15 C 0.045 3.955 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.296 1.296 19 H -0.296 1.296 20 H -0.234 1.234 21 C -0.150 4.150 22 C -0.188 4.188 23 C 0.050 3.950 24 O -0.251 6.251 25 C 0.617 3.383 26 O -0.528 6.528 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.193 0.807 31 H 0.197 0.803 32 H 0.162 0.838 33 H 0.417 0.583 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.265 0.735 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 2.405 8.685 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.267 5.267 3 C -0.041 4.041 4 C -0.069 4.069 5 C -0.101 4.101 6 C -0.084 4.084 7 C -0.121 4.121 8 C 0.328 3.672 9 O -0.470 6.470 10 N -0.338 5.338 11 C 0.033 3.967 12 C -0.043 4.043 13 C -0.509 4.509 14 H 0.076 0.924 15 C -0.155 4.155 16 N -0.570 5.570 17 Si 0.735 3.265 18 H -0.224 1.224 19 H -0.223 1.223 20 H -0.156 1.156 21 C -0.187 4.187 22 C -0.226 4.226 23 C 0.002 3.998 24 O -0.156 6.156 25 C 0.372 3.628 26 O -0.414 6.414 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.147 0.853 30 H 0.210 0.790 31 H 0.214 0.786 32 H 0.179 0.821 33 H 0.256 0.744 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.760 0.782 8.422 21.495 hybrid contribution 0.823 -1.091 -0.916 1.645 sum -18.937 -0.309 7.507 20.373 Atomic orbital electron populations 1.22286 0.70506 1.06678 1.05317 1.45873 1.09574 1.03300 1.67945 1.18749 0.86655 0.91401 1.07255 1.20898 1.03496 0.85576 0.96896 1.21548 0.89283 1.02551 0.96762 1.21650 1.00617 0.90784 0.95303 1.19011 0.89279 0.93454 1.10375 1.18651 0.86148 0.85689 0.76710 1.90779 1.86006 1.17872 1.52320 1.45666 1.05160 1.12052 1.70886 1.20976 0.80876 0.96048 0.98844 1.19438 0.95149 0.95310 0.94393 1.20377 1.46586 0.93449 0.90462 0.92362 1.25370 0.94764 0.98379 0.96959 1.69964 1.50047 1.34701 1.02251 0.86436 0.78236 0.82831 0.79038 1.22356 1.22316 1.15646 1.22848 1.02267 1.00885 0.92709 1.23116 0.93500 1.00180 1.05838 1.19151 0.95332 0.79788 1.05563 1.85078 1.28541 1.22619 1.79340 1.18921 0.78687 0.86111 0.79045 1.91074 1.74767 1.17677 1.57911 0.89191 0.89433 0.85259 0.78999 0.78616 0.82072 0.74433 0.95250 0.92201 0.92609 0.88840 0.88444 0.89531 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.07 127.77 1.41 2.28 16 2 N -0.53 -11.44 3.21 -784.50 -2.52 -13.95 16 3 C 0.06 1.17 6.84 38.28 0.26 1.43 16 4 C -0.05 -0.50 10.02 22.38 0.22 -0.27 16 5 C -0.08 -0.88 10.02 22.24 0.22 -0.66 16 6 C -0.06 -1.27 9.51 22.55 0.21 -1.05 16 7 C -0.12 -3.56 5.88 -20.05 -0.12 -3.68 16 8 C 0.54 21.40 7.75 86.71 0.67 22.07 16 9 O -0.59 -28.73 16.08 6.54 0.11 -28.62 16 10 N -0.69 -25.87 5.42 -466.23 -2.53 -28.40 16 11 C 0.16 6.62 5.07 86.38 0.44 7.06 16 12 C -0.04 -1.73 0.85 -52.93 -0.04 -1.77 16 13 C -0.47 -23.50 9.20 25.60 0.24 -23.26 16 14 H 0.06 3.12 8.06 -2.91 -0.02 3.10 16 15 C 0.04 2.42 5.46 84.65 0.46 2.89 16 16 N -0.93 -53.74 13.96 21.45 0.30 -53.44 16 17 Si 0.91 44.29 24.64 68.60 1.69 45.98 16 18 H -0.30 -15.25 6.96 99.48 0.69 -14.56 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 20 H -0.23 -10.55 6.18 99.48 0.61 -9.94 16 21 C -0.15 -5.08 9.96 30.62 0.30 -4.78 16 22 C -0.19 -7.03 8.80 30.62 0.27 -6.76 16 23 C 0.05 1.54 6.94 22.97 0.16 1.70 16 24 O -0.25 -9.62 10.04 15.32 0.15 -9.47 16 25 C 0.62 20.29 9.07 129.79 1.18 21.46 16 26 O -0.53 -19.99 17.81 19.21 0.34 -19.65 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.09 0.95 8.06 -2.38 -0.02 0.93 16 29 H 0.13 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.19 0.04 8.06 -2.91 -0.02 0.01 16 31 H 0.20 0.37 8.06 -2.92 -0.02 0.35 16 32 H 0.16 2.86 6.47 -2.91 -0.02 2.84 16 33 H 0.42 13.55 6.43 -92.71 -0.60 12.96 16 34 H 0.03 1.42 4.13 -2.39 -0.01 1.41 16 35 H 0.06 2.45 8.06 -2.38 -0.02 2.43 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 39 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -82.14 342.32 3.83 -78.31 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.39 Total: 12.59 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 5.89 Total: 16.65 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -4.74 Total: -95.79 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: 0.60 Total: -57.74 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.69 Total: 45.98 kcal Total: -82.14 3.83 -78.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431104594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.701 kcal (2) G-P(sol) polarization free energy of solvation -82.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds