Wall clock time and date at job start Tue Mar 31 2020 10:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47394 * 2 1 4 4 C 1.50697 * 109.47442 * 239.99526 * 2 1 3 5 5 H 1.07996 * 120.00524 * 245.30052 * 4 2 1 6 6 C 1.37874 * 119.99707 * 65.29982 * 4 2 1 7 7 N 1.31512 * 120.00261 * 184.87742 * 6 4 2 8 8 Si 1.86801 * 120.00000 * 5.15776 * 6 4 2 9 9 H 1.48502 * 109.47065 * 269.72250 * 8 6 4 10 10 H 1.48498 * 109.47253 * 29.72290 * 8 6 4 11 11 H 1.48506 * 109.47302 * 149.72604 * 8 6 4 12 12 N 1.46502 * 109.46669 * 119.99657 * 2 1 3 13 13 C 1.46495 * 120.00213 * 60.00427 * 12 2 1 14 14 C 1.34784 * 119.99955 * 239.99741 * 12 2 1 15 15 O 1.21362 * 119.99746 * 5.69364 * 14 12 2 16 16 C 1.49327 * 119.99630 * 185.69003 * 14 12 2 17 17 O 1.21383 * 120.00473 * 5.69625 * 16 14 12 18 18 N 1.34780 * 119.99540 * 185.69507 * 16 14 12 19 19 C 1.39718 * 119.99864 * 185.30452 * 18 16 14 20 20 C 1.39414 * 119.74410 * 34.48092 * 19 18 16 21 21 C 1.36594 * 120.34381 * 179.79460 * 20 19 18 22 22 C 1.39485 * 119.81503 * 0.44493 * 21 20 19 23 23 C 1.46799 * 134.25275 * 179.79290 * 22 21 20 24 24 C 1.33997 * 106.19881 * 180.02562 * 23 22 21 25 25 O 1.34494 * 110.15740 * 359.97438 * 24 23 22 26 26 C 1.34835 * 110.87954 * 0.02562 * 25 24 23 27 27 C 1.38544 * 119.74058 * 214.75786 * 19 18 16 28 28 H 1.09001 * 109.47070 * 174.91231 * 1 2 3 29 29 H 1.08995 * 109.47412 * 294.92043 * 1 2 3 30 30 H 1.09000 * 109.46548 * 54.91905 * 1 2 3 31 31 H 0.97009 * 119.99750 * 355.27756 * 7 6 4 32 32 H 1.09005 * 109.47751 * 95.69603 * 13 12 2 33 33 H 1.09000 * 109.47580 * 215.69752 * 13 12 2 34 34 H 1.09004 * 109.47115 * 335.69892 * 13 12 2 35 35 H 0.97000 * 120.00332 * 5.30113 * 18 16 14 36 36 H 1.08000 * 119.82254 * 0.02562 * 20 19 18 37 37 H 1.07998 * 120.09139 * 180.24928 * 21 20 19 38 38 H 1.08002 * 126.90646 * 0.03556 * 23 22 21 39 39 H 1.07996 * 124.92214 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.12300 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5809 -1.6357 -1.1336 6 6 1.7918 -0.1792 -2.4797 7 7 2.1452 -0.8457 -3.5569 8 14 0.9708 1.4908 -2.6421 9 1 -0.5019 1.3136 -2.7135 10 1 1.3122 2.3270 -1.4634 11 1 1.4494 2.1595 -3.8788 12 7 2.0182 -0.6906 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0835 15 8 3.0015 1.1522 1.9463 16 6 3.3951 -0.7712 3.2351 17 8 3.2731 -1.9762 3.3161 18 7 4.0740 -0.0973 4.1845 19 6 4.7310 -0.7946 5.2014 20 6 5.3130 -2.0315 4.9275 21 6 5.9619 -2.7218 5.9115 22 6 6.0345 -2.1906 7.1991 23 6 6.6289 -2.6441 8.4624 24 6 6.3656 -1.6883 9.3639 25 8 5.6706 -0.6895 8.7908 26 6 5.4465 -0.9469 7.4864 27 6 4.7940 -0.2542 6.4756 28 1 -0.3633 -1.0236 -0.0911 29 1 -0.3634 0.4330 0.9319 30 1 -0.3632 0.5907 -0.8410 31 1 2.6361 -1.6782 -3.4729 32 1 2.4651 -2.7354 1.0613 33 1 1.5245 -2.2608 2.4960 34 1 0.7402 -2.3268 0.8995 35 1 4.1065 0.8719 4.1618 36 1 5.2536 -2.4442 3.9313 37 1 6.4147 -3.6778 5.6938 38 1 7.1699 -3.5634 8.6315 39 1 6.6677 -1.7158 10.4003 40 1 4.3374 0.7026 6.6817 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443702318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:41 Heat of formation + Delta-G solvation = -16.557747 kcal Electronic energy + Delta-G solvation = -25590.503911 eV Core-core repulsion = 21758.918666 eV Total energy + Delta-G solvation = -3831.585245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.64237 -40.89154 -38.94696 -37.57085 -36.02353 -34.70181 -32.83058 -32.49694 -30.69328 -30.37902 -28.87179 -26.48073 -25.23211 -24.57487 -23.65443 -22.30463 -21.68722 -20.63031 -19.35244 -18.01681 -17.78089 -17.57313 -17.32521 -16.48356 -16.31912 -16.22682 -15.49399 -15.24383 -14.70053 -14.38568 -13.98218 -13.91008 -13.79749 -13.26657 -13.13741 -12.89883 -12.71121 -12.65460 -12.35500 -12.06254 -11.83219 -11.72588 -11.43103 -11.37337 -11.01815 -10.77288 -10.61138 -10.10110 -9.92685 -9.80120 -9.12400 -8.98529 -8.74312 -8.58125 -8.12661 -7.98350 -6.54771 -4.24545 0.57488 1.13286 1.66246 2.11918 2.26372 2.77387 3.30208 3.37427 3.41523 3.53611 3.60211 3.81879 4.24664 4.38125 4.43996 4.55461 4.79022 4.88088 5.07520 5.09258 5.18421 5.31066 5.46855 5.76977 5.80254 5.91873 5.98476 6.06847 6.12921 6.15784 6.22856 6.26629 6.35646 6.42457 6.51008 6.75803 6.84216 6.90631 7.05118 7.15215 7.62031 7.74674 8.02825 8.24600 8.37108 8.77037 9.46338 10.83660 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.034478 B = 0.002682 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.918585 B =10438.658036 C =10737.543817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.225 3.775 3 H 0.066 0.934 4 C -0.606 4.606 5 H 0.064 0.936 6 C 0.034 3.966 7 N -0.904 5.904 8 Si 1.049 2.951 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.546 5.546 13 C 0.086 3.914 14 C 0.496 3.504 15 O -0.535 6.535 16 C 0.511 3.489 17 O -0.493 6.493 18 N -0.651 5.651 19 C 0.184 3.816 20 C -0.131 4.131 21 C -0.050 4.050 22 C -0.149 4.149 23 C -0.204 4.204 24 C -0.001 4.001 25 O -0.196 6.196 26 C 0.071 3.929 27 C -0.139 4.139 28 H 0.056 0.944 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.269 0.731 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.424 0.576 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.157 0.843 39 H 0.207 0.793 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.068 -2.024 23.585 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.124 3.876 3 H 0.083 0.917 4 C -0.645 4.645 5 H 0.082 0.918 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.878 3.122 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.276 5.276 13 C -0.057 4.057 14 C 0.277 3.723 15 O -0.414 6.414 16 C 0.294 3.706 17 O -0.365 6.365 18 N -0.298 5.298 19 C 0.089 3.911 20 C -0.151 4.151 21 C -0.069 4.069 22 C -0.151 4.151 23 C -0.223 4.223 24 C -0.066 4.066 25 O -0.097 6.097 26 C 0.023 3.977 27 C -0.160 4.160 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.263 0.737 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.223 0.777 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.345 -0.955 22.445 23.092 hybrid contribution 0.770 -1.040 1.093 1.694 sum 6.116 -1.994 23.538 24.401 Atomic orbital electron populations 1.22416 0.98324 1.01556 0.99489 1.19641 0.90747 0.95304 0.81888 0.91666 1.22228 1.40602 1.10919 0.90702 0.91810 1.25716 0.96382 1.03427 0.91613 1.70820 1.36024 1.16815 1.30128 0.83953 0.76329 0.75653 0.76291 1.20780 1.19971 1.21277 1.47970 1.45410 1.12797 1.21422 1.21926 1.01233 0.81112 1.01412 1.19573 0.81841 0.87212 0.83696 1.90724 1.61001 1.14380 1.75328 1.20818 0.78747 0.87785 0.83231 1.90742 1.56208 1.14063 1.75532 1.43226 1.50126 1.11709 1.24743 1.17247 0.93975 0.93233 0.86620 1.20844 0.98365 0.94704 1.01164 1.20139 0.97239 0.99457 0.90072 1.19970 1.03871 0.95984 0.95246 1.22510 1.06409 1.01915 0.91481 1.23926 0.96599 0.87012 0.99066 1.84012 1.61988 1.42937 1.20757 1.19090 1.00309 0.95177 0.83087 1.19386 1.05468 1.02663 0.88509 0.92469 0.94761 0.92460 0.92100 0.92423 0.90725 0.90996 0.73735 0.83897 0.84947 0.82511 0.77662 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.67 37.16 0.32 -3.00 16 2 C 0.23 5.32 2.20 -69.08 -0.15 5.17 16 3 H 0.07 1.66 5.42 -51.93 -0.28 1.38 16 4 C -0.61 -16.45 8.77 -34.44 -0.30 -16.75 16 5 H 0.06 1.86 7.79 -52.49 -0.41 1.45 16 6 C 0.03 0.96 5.43 -17.82 -0.10 0.87 16 7 N -0.90 -27.08 13.70 55.43 0.76 -26.33 16 8 Si 1.05 24.83 25.28 -169.99 -4.30 20.53 16 9 H -0.28 -6.20 6.82 56.52 0.39 -5.82 16 10 H -0.27 -6.20 6.35 56.52 0.36 -5.84 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.55 -11.41 2.75 -175.81 -0.48 -11.89 16 13 C 0.09 1.56 8.36 59.84 0.50 2.06 16 14 C 0.50 9.76 7.72 -11.64 -0.09 9.67 16 15 O -0.54 -11.47 15.85 5.49 0.09 -11.38 16 16 C 0.51 8.40 7.42 -11.64 -0.09 8.31 16 17 O -0.49 -8.44 11.12 5.47 0.06 -8.38 16 18 N -0.65 -8.75 5.30 -10.28 -0.05 -8.81 16 19 C 0.18 2.36 6.25 -83.71 -0.52 1.84 16 20 C -0.13 -1.69 8.57 -39.74 -0.34 -2.03 16 21 C -0.05 -0.57 10.04 -39.71 -0.40 -0.97 16 22 C -0.15 -1.68 6.40 -105.11 -0.67 -2.36 16 23 C -0.20 -1.74 11.14 -37.61 -0.42 -2.15 16 24 C 0.00 -0.01 11.96 29.24 0.35 0.34 16 25 O -0.20 -2.08 10.58 3.71 0.04 -2.04 16 26 C 0.07 0.84 7.41 -38.50 -0.29 0.56 16 27 C -0.14 -1.60 9.98 -39.25 -0.39 -1.99 16 28 H 0.06 1.14 6.87 -51.93 -0.36 0.78 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.20 4.40 -51.93 -0.23 0.97 16 31 H 0.27 8.03 8.72 -40.82 -0.36 7.67 16 32 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 33 H 0.07 1.23 6.00 -51.93 -0.31 0.92 16 34 H 0.07 1.27 6.54 -51.93 -0.34 0.93 16 35 H 0.42 4.99 8.32 -40.82 -0.34 4.65 16 36 H 0.14 1.98 6.47 -52.49 -0.34 1.64 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.21 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -32.39 334.16 -5.79 -38.17 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.35 Total: 5.52 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.59 Total: -0.44 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.22 Total: -47.02 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.19 Total: -21.80 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.30 Total: 20.53 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.39 -5.79 -38.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443702318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.617 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds