Wall clock time and date at job start Tue Mar 31 2020 10:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47394 * 2 1 4 4 C 1.50697 * 109.47442 * 239.99526 * 2 1 3 5 5 H 1.07996 * 120.00524 * 245.30052 * 4 2 1 6 6 C 1.37874 * 119.99707 * 65.29982 * 4 2 1 7 7 N 1.31512 * 120.00261 * 184.87742 * 6 4 2 8 8 Si 1.86801 * 120.00000 * 5.15776 * 6 4 2 9 9 H 1.48502 * 109.47065 * 269.72250 * 8 6 4 10 10 H 1.48498 * 109.47253 * 29.72290 * 8 6 4 11 11 H 1.48506 * 109.47302 * 149.72604 * 8 6 4 12 12 N 1.46502 * 109.46669 * 119.99657 * 2 1 3 13 13 C 1.46495 * 120.00213 * 60.00427 * 12 2 1 14 14 C 1.34784 * 119.99955 * 239.99741 * 12 2 1 15 15 O 1.21362 * 119.99746 * 5.69364 * 14 12 2 16 16 C 1.49327 * 119.99630 * 185.69003 * 14 12 2 17 17 O 1.21383 * 120.00473 * 5.69625 * 16 14 12 18 18 N 1.34780 * 119.99540 * 185.69507 * 16 14 12 19 19 C 1.39718 * 119.99864 * 185.30452 * 18 16 14 20 20 C 1.39414 * 119.74410 * 34.48092 * 19 18 16 21 21 C 1.36594 * 120.34381 * 179.79460 * 20 19 18 22 22 C 1.39485 * 119.81503 * 0.44493 * 21 20 19 23 23 C 1.46799 * 134.25275 * 179.79290 * 22 21 20 24 24 C 1.33997 * 106.19881 * 180.02562 * 23 22 21 25 25 O 1.34494 * 110.15740 * 359.97438 * 24 23 22 26 26 C 1.34835 * 110.87954 * 0.02562 * 25 24 23 27 27 C 1.38544 * 119.74058 * 214.75786 * 19 18 16 28 28 H 1.09001 * 109.47070 * 174.91231 * 1 2 3 29 29 H 1.08995 * 109.47412 * 294.92043 * 1 2 3 30 30 H 1.09000 * 109.46548 * 54.91905 * 1 2 3 31 31 H 0.97009 * 119.99750 * 355.27756 * 7 6 4 32 32 H 1.09005 * 109.47751 * 95.69603 * 13 12 2 33 33 H 1.09000 * 109.47580 * 215.69752 * 13 12 2 34 34 H 1.09004 * 109.47115 * 335.69892 * 13 12 2 35 35 H 0.97000 * 120.00332 * 5.30113 * 18 16 14 36 36 H 1.08000 * 119.82254 * 0.02562 * 20 19 18 37 37 H 1.07998 * 120.09139 * 180.24928 * 21 20 19 38 38 H 1.08002 * 126.90646 * 0.03556 * 23 22 21 39 39 H 1.07996 * 124.92214 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.12300 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5809 -1.6357 -1.1336 6 6 1.7918 -0.1792 -2.4797 7 7 2.1452 -0.8457 -3.5569 8 14 0.9708 1.4908 -2.6421 9 1 -0.5019 1.3136 -2.7135 10 1 1.3122 2.3270 -1.4634 11 1 1.4494 2.1595 -3.8788 12 7 2.0182 -0.6906 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0835 15 8 3.0015 1.1522 1.9463 16 6 3.3951 -0.7712 3.2351 17 8 3.2731 -1.9762 3.3161 18 7 4.0740 -0.0973 4.1845 19 6 4.7310 -0.7946 5.2014 20 6 5.3130 -2.0315 4.9275 21 6 5.9619 -2.7218 5.9115 22 6 6.0345 -2.1906 7.1991 23 6 6.6289 -2.6441 8.4624 24 6 6.3656 -1.6883 9.3639 25 8 5.6706 -0.6895 8.7908 26 6 5.4465 -0.9469 7.4864 27 6 4.7940 -0.2542 6.4756 28 1 -0.3633 -1.0236 -0.0911 29 1 -0.3634 0.4330 0.9319 30 1 -0.3632 0.5907 -0.8410 31 1 2.6361 -1.6782 -3.4729 32 1 2.4651 -2.7354 1.0613 33 1 1.5245 -2.2608 2.4960 34 1 0.7402 -2.3268 0.8995 35 1 4.1065 0.8719 4.1618 36 1 5.2536 -2.4442 3.9313 37 1 6.4147 -3.6778 5.6938 38 1 7.1699 -3.5634 8.6315 39 1 6.6677 -1.7158 10.4003 40 1 4.3374 0.7026 6.6817 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443702318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:40 Heat of formation + Delta-G solvation = -38.684112 kcal Electronic energy + Delta-G solvation = -25591.463382 eV Core-core repulsion = 21758.918666 eV Total energy + Delta-G solvation = -3832.544716 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.41400 -42.21083 -40.31782 -38.72196 -37.65436 -35.87696 -34.79641 -33.30623 -32.22513 -31.54537 -29.79036 -28.00012 -26.92829 -26.20976 -24.53446 -23.52879 -22.52040 -21.85871 -20.88233 -19.65098 -19.15817 -18.84491 -18.28141 -17.90676 -17.58989 -17.06907 -16.80971 -16.67452 -15.84102 -15.54153 -15.46301 -15.14408 -14.86709 -14.71618 -14.62768 -14.36066 -13.88081 -13.77967 -13.69707 -13.48525 -13.42086 -13.22269 -13.07930 -12.53473 -12.37216 -12.23332 -11.88293 -11.72945 -11.64240 -11.04064 -10.78616 -10.70692 -10.55691 -9.77173 -9.64135 -8.94930 -8.76004 -6.48258 -0.35121 0.17544 0.41002 1.07414 1.41728 1.43655 1.53912 1.68991 1.84593 2.00951 2.42137 2.47669 2.62496 3.02684 3.16303 3.52103 3.72987 3.96948 4.00063 4.24431 4.25951 4.31174 4.42710 4.51491 4.63234 4.66669 4.68896 4.69045 4.87225 4.94662 4.98405 5.02712 5.15209 5.23665 5.30019 5.41995 5.48782 5.56854 5.67724 5.86813 5.96733 6.12518 6.29668 6.45058 6.57469 6.83666 7.31222 8.59355 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.034478 B = 0.002682 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.918585 B =10438.658036 C =10737.543817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.225 3.775 3 H 0.049 0.951 4 C -0.602 4.602 5 H 0.029 0.971 6 C -0.014 4.014 7 N -0.936 5.936 8 Si 1.083 2.917 9 H -0.250 1.250 10 H -0.259 1.259 11 H -0.290 1.290 12 N -0.559 5.559 13 C 0.093 3.907 14 C 0.493 3.507 15 O -0.555 6.555 16 C 0.519 3.481 17 O -0.503 6.503 18 N -0.634 5.634 19 C 0.161 3.839 20 C -0.146 4.146 21 C -0.054 4.054 22 C -0.157 4.157 23 C -0.218 4.218 24 C 0.012 3.988 25 O -0.206 6.206 26 C 0.050 3.950 27 C -0.130 4.130 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.254 0.746 32 H 0.043 0.957 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.432 0.568 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.183 0.817 39 H 0.253 0.747 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.830 -1.462 26.829 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.123 3.877 3 H 0.067 0.933 4 C -0.641 4.641 5 H 0.047 0.953 6 C -0.213 4.213 7 N -0.572 5.572 8 Si 0.905 3.095 9 H -0.175 1.175 10 H -0.183 1.183 11 H -0.217 1.217 12 N -0.289 5.289 13 C -0.049 4.049 14 C 0.275 3.725 15 O -0.435 6.435 16 C 0.302 3.698 17 O -0.377 6.377 18 N -0.281 5.281 19 C 0.067 3.933 20 C -0.165 4.165 21 C -0.072 4.072 22 C -0.159 4.159 23 C -0.236 4.236 24 C -0.051 4.051 25 O -0.107 6.107 26 C 0.002 3.998 27 C -0.150 4.150 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.271 0.729 36 H 0.145 0.855 37 H 0.170 0.830 38 H 0.201 0.799 39 H 0.269 0.731 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.121 -0.408 25.746 26.253 hybrid contribution 1.020 -1.290 0.295 1.671 sum 6.141 -1.698 26.040 26.808 Atomic orbital electron populations 1.22287 0.95615 1.02298 1.00962 1.19403 0.92758 0.93988 0.81550 0.93288 1.22373 1.39447 1.09613 0.92638 0.95259 1.27060 0.96659 1.06135 0.91458 1.70941 1.38028 1.16956 1.31239 0.83547 0.77437 0.71896 0.76593 1.17481 1.18344 1.21710 1.47978 1.46102 1.13709 1.21091 1.21958 1.00780 0.79538 1.02659 1.20085 0.81022 0.87126 0.84274 1.90698 1.61371 1.15366 1.76068 1.20095 0.79280 0.87383 0.83072 1.90738 1.57067 1.14175 1.75753 1.42995 1.49101 1.11991 1.24041 1.17286 0.95412 0.93684 0.86926 1.20822 0.99518 0.95208 1.00996 1.20331 0.96876 1.00077 0.89910 1.20388 1.03430 0.95960 0.96116 1.22879 1.07103 1.03449 0.90204 1.24894 0.94227 0.85395 1.00608 1.84029 1.62443 1.44123 1.20128 1.19273 1.01025 0.95687 0.83855 1.19507 1.04576 1.03079 0.87887 0.91911 0.92057 0.92407 0.93708 0.93803 0.88711 0.90575 0.72853 0.85483 0.83023 0.79921 0.73118 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.09 8.67 71.98 0.62 -5.47 16 2 C 0.23 10.57 2.20 44.24 0.10 10.67 16 3 H 0.05 2.48 5.42 -2.38 -0.01 2.46 16 4 C -0.60 -33.44 8.77 25.60 0.22 -33.21 16 5 H 0.03 1.78 7.79 -2.91 -0.02 1.76 16 6 C -0.01 -0.82 5.43 84.65 0.46 -0.36 16 7 N -0.94 -57.69 13.70 21.45 0.29 -57.40 16 8 Si 1.08 49.41 25.28 68.60 1.73 51.15 16 9 H -0.25 -10.14 6.82 99.48 0.68 -9.46 16 10 H -0.26 -11.09 6.35 99.48 0.63 -10.46 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 N -0.56 -23.35 2.75 -828.51 -2.28 -25.63 16 13 C 0.09 3.37 8.36 127.77 1.07 4.44 16 14 C 0.49 19.37 7.72 87.23 0.67 20.04 16 15 O -0.55 -23.70 15.85 -3.29 -0.05 -23.75 16 16 C 0.52 17.02 7.42 87.23 0.65 17.66 16 17 O -0.50 -17.26 11.12 -3.35 -0.04 -17.30 16 18 N -0.63 -16.79 5.30 -304.78 -1.62 -18.41 16 19 C 0.16 4.04 6.25 38.24 0.24 4.28 16 20 C -0.15 -3.75 8.57 22.17 0.19 -3.56 16 21 C -0.05 -1.16 10.04 22.19 0.22 -0.93 16 22 C -0.16 -3.27 6.40 -20.18 -0.13 -3.40 16 23 C -0.22 -3.02 11.14 23.54 0.26 -2.76 16 24 C 0.01 0.14 11.96 66.85 0.80 0.94 16 25 O -0.21 -3.84 10.58 -9.63 -0.10 -3.94 16 26 C 0.05 1.09 7.41 22.97 0.17 1.26 16 27 C -0.13 -2.82 9.98 22.48 0.22 -2.59 16 28 H 0.06 2.39 6.87 -2.39 -0.02 2.38 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 2.28 4.40 -2.39 -0.01 2.27 16 31 H 0.25 15.89 8.72 -92.70 -0.81 15.08 16 32 H 0.04 1.69 8.09 -2.38 -0.02 1.67 16 33 H 0.09 3.06 6.00 -2.39 -0.01 3.04 16 34 H 0.08 2.66 6.54 -2.38 -0.02 2.64 16 35 H 0.43 9.90 8.32 -92.71 -0.77 9.13 16 36 H 0.13 3.64 6.47 -2.91 -0.02 3.62 16 37 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.25 0.23 8.06 -2.91 -0.02 0.20 16 40 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -71.86 334.16 3.91 -67.95 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.19 Total: 20.31 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 5.77 Total: 7.01 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.60 Total: -101.43 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -0.19 Total: -44.99 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.73 Total: 51.15 kcal Total: -71.86 3.91 -67.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443702318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.266 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds