Wall clock time and date at job start Tue Mar 31 2020 12:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00226 * 2 1 4 4 C 1.52998 * 109.47580 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46823 * 64.80785 * 4 3 2 6 6 C 1.36851 * 120.00277 * 264.95471 * 5 4 3 7 7 H 1.07996 * 119.99901 * 139.73985 * 6 5 4 8 8 C 1.39049 * 119.99864 * 319.74064 * 6 5 4 9 9 N 1.31365 * 119.99897 * 167.85164 * 8 6 5 10 10 Si 1.86795 * 120.00131 * 347.84487 * 8 6 5 11 11 H 1.48502 * 109.46939 * 91.28045 * 10 8 6 12 12 H 1.48497 * 109.47179 * 211.28275 * 10 8 6 13 13 H 1.48496 * 109.47373 * 331.28657 * 10 8 6 14 14 C 1.34779 * 119.99869 * 84.96060 * 5 4 3 15 15 O 1.21633 * 119.99945 * 3.89146 * 14 5 4 16 16 C 1.47448 * 119.99855 * 183.89658 * 14 5 4 17 17 C 1.39885 * 120.01135 * 325.68329 * 16 14 5 18 18 C 1.36549 * 119.99667 * 179.72127 * 17 16 14 19 19 C 1.39830 * 120.00674 * 0.28414 * 18 17 16 20 20 C 1.47565 * 119.99648 * 179.97438 * 19 18 17 21 21 C 1.35976 * 126.60049 * 179.70906 * 20 19 18 22 22 N 1.34025 * 107.49111 * 179.89881 * 21 20 19 23 23 C 1.30432 * 108.93197 * 0.37256 * 22 21 20 24 24 O 1.33946 * 109.06787 * 359.76410 * 23 22 21 25 25 C 1.39843 * 120.01254 * 359.97438 * 19 18 17 26 26 C 1.36547 * 120.00791 * 0.04196 * 25 19 18 27 27 H 1.09000 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46846 * 299.99742 * 1 2 3 29 29 H 1.08996 * 109.46805 * 59.99891 * 1 2 3 30 30 H 1.09006 * 109.47275 * 60.00047 * 3 2 1 31 31 H 1.08998 * 109.46899 * 300.00594 * 3 2 1 32 32 H 1.09007 * 109.46579 * 304.81411 * 4 3 2 33 33 H 1.09001 * 109.47590 * 184.81421 * 4 3 2 34 34 H 0.97003 * 120.00114 * 179.97438 * 9 8 6 35 35 H 1.08005 * 120.00227 * 0.02562 * 17 16 14 36 36 H 1.08005 * 119.99700 * 180.29941 * 18 17 16 37 37 H 1.07996 * 126.25370 * 0.03474 * 21 20 19 38 38 H 1.07996 * 125.46579 * 179.74849 * 23 22 21 39 39 H 1.08005 * 119.99591 * 180.02562 * 25 19 18 40 40 H 1.07997 * 120.00338 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9753 0.5602 -1.2508 6 6 4.1958 -0.7894 -1.3010 7 1 3.8873 -1.3551 -2.1677 8 6 4.8169 -1.4325 -0.2361 9 7 4.8169 -2.7445 -0.1707 10 14 5.6516 -0.4308 1.1015 11 1 4.6817 -0.1557 2.1919 12 1 6.8041 -1.1935 1.6448 13 1 6.1324 0.8532 0.5312 14 6 4.1629 1.3151 -2.3515 15 8 4.0359 2.5232 -2.2893 16 6 4.5220 0.6764 -3.6310 17 6 5.3345 -0.4623 -3.6408 18 6 5.6622 -1.0569 -4.8256 19 6 5.1906 -0.5242 -6.0294 20 6 5.5454 -1.1666 -7.3096 21 6 5.1592 -0.7682 -8.5510 22 7 5.6991 -1.6202 -9.4336 23 6 6.3870 -2.5200 -8.7868 24 8 6.3120 -2.2676 -7.4735 25 6 4.3828 0.6173 -6.0203 26 6 4.0551 1.2126 -4.8359 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8516 0.5709 0.8429 33 1 3.9786 2.1768 0.0856 34 1 5.2506 -3.1932 0.5720 35 1 5.6985 -0.8740 -2.7111 36 1 6.2855 -1.9389 -4.8329 37 1 4.5338 0.0810 -8.7835 38 1 6.9298 -3.3375 -9.2378 39 1 4.0184 1.0283 -6.9502 40 1 3.4309 2.0939 -4.8289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457182551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:51 Heat of formation + Delta-G solvation = -1.853507 kcal Electronic energy + Delta-G solvation = -26076.183385 eV Core-core repulsion = 22245.235763 eV Total energy + Delta-G solvation = -3830.947621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.23581 -39.69921 -38.09105 -37.01450 -35.03918 -34.76426 -32.41549 -32.08459 -30.78800 -29.74904 -28.25205 -25.94558 -25.20490 -23.90641 -23.20352 -22.53296 -21.35242 -21.13574 -19.32208 -18.08936 -17.61686 -16.62662 -16.53769 -16.03807 -15.86354 -15.60502 -15.03479 -14.80938 -14.62912 -14.32468 -14.00860 -13.73031 -13.53193 -13.29953 -13.02200 -12.80125 -12.61536 -12.34508 -12.01049 -11.82724 -11.65323 -11.45292 -11.40898 -10.96624 -10.87479 -10.72497 -10.53260 -10.15327 -9.91988 -9.57287 -9.32617 -9.18114 -8.73702 -8.60024 -7.90549 -7.80609 -6.50574 -4.13530 0.69258 1.86973 2.00484 2.70844 2.73284 2.99724 3.15813 3.19056 3.60290 4.03258 4.11827 4.19589 4.31653 4.43523 4.76620 4.94443 5.03745 5.21777 5.24174 5.49517 5.53859 5.59227 5.65326 5.72522 5.75196 5.80730 5.84302 5.85910 5.97540 6.10013 6.14666 6.25166 6.27368 6.32018 6.46264 6.69275 6.91031 7.04241 7.20490 7.34607 7.66008 7.69437 7.97459 8.16076 8.82635 9.19957 9.50936 10.57832 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016074 B = 0.003876 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.492453 B = 7221.302251 C = 7873.163646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.054 3.946 4 C 0.095 3.905 5 N -0.444 5.444 6 C -0.332 4.332 7 H 0.112 0.888 8 C 0.068 3.932 9 N -0.857 5.857 10 Si 0.880 3.120 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.261 1.261 14 C 0.513 3.487 15 O -0.597 6.597 16 C -0.080 4.080 17 C -0.063 4.063 18 C -0.110 4.110 19 C -0.027 4.027 20 C 0.020 3.980 21 C -0.038 4.038 22 N -0.487 5.487 23 C 0.159 3.841 24 O -0.196 6.196 25 C -0.109 4.109 26 C -0.080 4.080 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.276 0.724 35 H 0.170 0.830 36 H 0.126 0.874 37 H 0.185 0.815 38 H 0.248 0.752 39 H 0.125 0.875 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 1.998 -7.351 7.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.024 4.024 4 C -0.027 4.027 5 N -0.162 5.162 6 C -0.459 4.459 7 H 0.129 0.871 8 C -0.140 4.140 9 N -0.491 5.491 10 Si 0.709 3.291 11 H -0.199 1.199 12 H -0.215 1.215 13 H -0.186 1.186 14 C 0.304 3.696 15 O -0.483 6.483 16 C -0.083 4.083 17 C -0.081 4.081 18 C -0.129 4.129 19 C -0.028 4.028 20 C -0.033 4.033 21 C -0.178 4.178 22 N -0.216 5.216 23 C -0.066 4.066 24 O -0.082 6.082 25 C -0.127 4.127 26 C -0.099 4.099 27 H 0.100 0.900 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.187 0.813 36 H 0.144 0.856 37 H 0.202 0.798 38 H 0.264 0.736 39 H 0.143 0.857 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.761 2.191 -7.785 8.124 hybrid contribution 0.127 0.280 1.451 1.483 sum -0.634 2.471 -6.334 6.829 Atomic orbital electron populations 1.22668 0.82792 1.02177 0.98875 1.88180 1.17909 1.26730 1.95063 1.22862 0.94711 0.85223 0.99557 1.21862 0.92456 0.99165 0.89257 1.43537 1.56887 1.08142 1.07627 1.19162 1.38469 0.80625 1.07611 0.87092 1.25305 0.95858 0.95326 0.97499 1.69648 1.40410 1.07545 1.31530 0.86917 0.79129 0.80911 0.82158 1.19897 1.21520 1.18551 1.18144 0.80830 0.85925 0.84725 1.90650 1.57541 1.13947 1.86154 1.20119 0.98596 0.96009 0.93567 1.22042 0.93913 0.92437 0.99683 1.21021 1.00234 1.00334 0.91281 1.17757 1.00906 0.96044 0.88095 1.21691 0.96910 0.88368 0.96354 1.23273 1.04800 1.02220 0.87508 1.70281 1.11395 1.04766 1.35115 1.28039 1.00996 1.00936 0.76621 1.84499 1.55146 1.38807 1.29786 1.20517 0.98900 0.95004 0.98324 1.20788 0.99010 0.99285 0.90781 0.90028 0.95061 0.94797 0.93667 0.93131 0.90417 0.89546 0.91314 0.81270 0.85587 0.79804 0.73585 0.85719 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.41 10.41 -35.23 -0.37 -7.77 16 3 C 0.05 1.03 6.25 37.16 0.23 1.27 16 4 C 0.10 2.04 4.25 -4.04 -0.02 2.02 16 5 N -0.44 -10.29 2.15 -116.03 -0.25 -10.54 16 6 C -0.33 -8.15 6.43 -15.01 -0.10 -8.24 16 7 H 0.11 2.91 6.44 -52.49 -0.34 2.57 16 8 C 0.07 1.70 5.40 -17.45 -0.09 1.61 16 9 N -0.86 -22.56 13.95 55.50 0.77 -21.78 16 10 Si 0.88 19.67 24.67 -169.99 -4.19 15.48 16 11 H -0.27 -5.91 6.66 56.52 0.38 -5.54 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 13 H -0.26 -5.84 7.02 56.52 0.40 -5.45 16 14 C 0.51 11.71 7.34 -12.51 -0.09 11.61 16 15 O -0.60 -14.39 16.43 5.25 0.09 -14.30 16 16 C -0.08 -1.62 5.48 -104.91 -0.57 -2.19 16 17 C -0.06 -1.22 7.67 -39.58 -0.30 -1.53 16 18 C -0.11 -1.91 9.67 -39.60 -0.38 -2.29 16 19 C -0.03 -0.43 5.88 -104.90 -0.62 -1.04 16 20 C 0.02 0.29 7.06 -36.59 -0.26 0.03 16 21 C -0.04 -0.51 11.29 -17.41 -0.20 -0.71 16 22 N -0.49 -6.49 11.27 -14.66 -0.17 -6.66 16 23 C 0.16 1.76 13.21 52.17 0.69 2.45 16 24 O -0.20 -2.71 10.57 4.25 0.04 -2.67 16 25 C -0.11 -1.63 9.51 -39.59 -0.38 -2.00 16 26 C -0.08 -1.37 9.55 -39.57 -0.38 -1.75 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.71 3.03 -51.93 -0.16 1.56 16 33 H 0.09 1.76 7.52 -51.93 -0.39 1.37 16 34 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.17 3.63 5.59 -52.48 -0.29 3.34 16 36 H 0.13 2.02 7.93 -52.48 -0.42 1.61 16 37 H 0.18 1.96 7.29 -52.49 -0.38 1.58 16 38 H 0.25 1.40 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.44 7.02 -52.48 -0.37 1.07 16 40 H 0.13 2.12 7.98 -52.49 -0.42 1.70 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -30.60 340.10 -4.76 -35.36 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.47 Total: 6.93 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.35 Total: 0.84 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.36 Total: -38.98 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.24 Total: -24.74 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.19 Total: 15.48 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.60 -4.76 -35.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.506 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds