Wall clock time and date at job start Tue Mar 31 2020 12:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00226 * 2 1 4 4 C 1.52998 * 109.47580 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46823 * 64.80785 * 4 3 2 6 6 C 1.36851 * 120.00277 * 264.95471 * 5 4 3 7 7 H 1.07996 * 119.99901 * 139.73985 * 6 5 4 8 8 C 1.39049 * 119.99864 * 319.74064 * 6 5 4 9 9 N 1.31365 * 119.99897 * 167.85164 * 8 6 5 10 10 Si 1.86795 * 120.00131 * 347.84487 * 8 6 5 11 11 H 1.48502 * 109.46939 * 91.28045 * 10 8 6 12 12 H 1.48497 * 109.47179 * 211.28275 * 10 8 6 13 13 H 1.48496 * 109.47373 * 331.28657 * 10 8 6 14 14 C 1.34779 * 119.99869 * 84.96060 * 5 4 3 15 15 O 1.21633 * 119.99945 * 3.89146 * 14 5 4 16 16 C 1.47448 * 119.99855 * 183.89658 * 14 5 4 17 17 C 1.39885 * 120.01135 * 325.68329 * 16 14 5 18 18 C 1.36549 * 119.99667 * 179.72127 * 17 16 14 19 19 C 1.39830 * 120.00674 * 0.28414 * 18 17 16 20 20 C 1.47565 * 119.99648 * 179.97438 * 19 18 17 21 21 C 1.35976 * 126.60049 * 179.70906 * 20 19 18 22 22 N 1.34025 * 107.49111 * 179.89881 * 21 20 19 23 23 C 1.30432 * 108.93197 * 0.37256 * 22 21 20 24 24 O 1.33946 * 109.06787 * 359.76410 * 23 22 21 25 25 C 1.39843 * 120.01254 * 359.97438 * 19 18 17 26 26 C 1.36547 * 120.00791 * 0.04196 * 25 19 18 27 27 H 1.09000 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46846 * 299.99742 * 1 2 3 29 29 H 1.08996 * 109.46805 * 59.99891 * 1 2 3 30 30 H 1.09006 * 109.47275 * 60.00047 * 3 2 1 31 31 H 1.08998 * 109.46899 * 300.00594 * 3 2 1 32 32 H 1.09007 * 109.46579 * 304.81411 * 4 3 2 33 33 H 1.09001 * 109.47590 * 184.81421 * 4 3 2 34 34 H 0.97003 * 120.00114 * 179.97438 * 9 8 6 35 35 H 1.08005 * 120.00227 * 0.02562 * 17 16 14 36 36 H 1.08005 * 119.99700 * 180.29941 * 18 17 16 37 37 H 1.07996 * 126.25370 * 0.03474 * 21 20 19 38 38 H 1.07996 * 125.46579 * 179.74849 * 23 22 21 39 39 H 1.08005 * 119.99591 * 180.02562 * 25 19 18 40 40 H 1.07997 * 120.00338 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9753 0.5602 -1.2508 6 6 4.1958 -0.7894 -1.3010 7 1 3.8873 -1.3551 -2.1677 8 6 4.8169 -1.4325 -0.2361 9 7 4.8169 -2.7445 -0.1707 10 14 5.6516 -0.4308 1.1015 11 1 4.6817 -0.1557 2.1919 12 1 6.8041 -1.1935 1.6448 13 1 6.1324 0.8532 0.5312 14 6 4.1629 1.3151 -2.3515 15 8 4.0359 2.5232 -2.2893 16 6 4.5220 0.6764 -3.6310 17 6 5.3345 -0.4623 -3.6408 18 6 5.6622 -1.0569 -4.8256 19 6 5.1906 -0.5242 -6.0294 20 6 5.5454 -1.1666 -7.3096 21 6 5.1592 -0.7682 -8.5510 22 7 5.6991 -1.6202 -9.4336 23 6 6.3870 -2.5200 -8.7868 24 8 6.3120 -2.2676 -7.4735 25 6 4.3828 0.6173 -6.0203 26 6 4.0551 1.2126 -4.8359 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8516 0.5709 0.8429 33 1 3.9786 2.1768 0.0856 34 1 5.2506 -3.1932 0.5720 35 1 5.6985 -0.8740 -2.7111 36 1 6.2855 -1.9389 -4.8329 37 1 4.5338 0.0810 -8.7835 38 1 6.9298 -3.3375 -9.2378 39 1 4.0184 1.0283 -6.9502 40 1 3.4309 2.0939 -4.8289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457182551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:50 Heat of formation + Delta-G solvation = -23.791547 kcal Electronic energy + Delta-G solvation = -26077.134689 eV Core-core repulsion = 22245.235763 eV Total energy + Delta-G solvation = -3831.898926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.23780 -41.32372 -39.55109 -38.52540 -36.83326 -35.77426 -34.01573 -33.67521 -32.15269 -31.22219 -29.50095 -27.29422 -26.97346 -25.29285 -24.41021 -23.90366 -22.58807 -22.37800 -21.01705 -19.58727 -18.86758 -18.28600 -17.62135 -17.55855 -17.10758 -17.06219 -16.57714 -16.31205 -16.23156 -15.68908 -15.35963 -15.05846 -14.93611 -14.69004 -14.50320 -14.30017 -14.12806 -13.74689 -13.61798 -13.28831 -13.19334 -13.01164 -12.60025 -12.41487 -12.39661 -12.06453 -11.92571 -11.66803 -11.57112 -11.13396 -10.82671 -10.65947 -10.45631 -10.00611 -9.71561 -9.03391 -8.42590 -6.07159 -0.54383 0.52397 0.81584 1.20146 1.32159 1.39788 1.69451 1.74777 2.00054 2.19241 2.48754 2.83849 2.92365 3.16656 3.39626 3.65227 3.91569 3.94079 4.00850 4.09051 4.09729 4.16044 4.34650 4.45212 4.46322 4.48482 4.53060 4.56826 4.70822 4.71810 4.82443 4.88431 4.91582 5.12883 5.35090 5.37020 5.41238 5.52303 5.61074 5.90753 6.07815 6.22872 6.34788 6.68601 6.94634 7.34617 7.68098 8.69300 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016074 B = 0.003876 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.492453 B = 7221.302251 C = 7873.163646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.060 3.940 4 C 0.086 3.914 5 N -0.455 5.455 6 C -0.315 4.315 7 H 0.085 0.915 8 C 0.031 3.969 9 N -0.897 5.897 10 Si 0.926 3.074 11 H -0.259 1.259 12 H -0.287 1.287 13 H -0.265 1.265 14 C 0.512 3.488 15 O -0.613 6.613 16 C -0.119 4.119 17 C -0.071 4.071 18 C -0.121 4.121 19 C -0.009 4.009 20 C -0.019 4.019 21 C -0.018 4.018 22 N -0.518 5.518 23 C 0.186 3.814 24 O -0.211 6.211 25 C -0.099 4.099 26 C -0.074 4.074 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.278 0.722 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.210 0.790 38 H 0.296 0.704 39 H 0.168 0.832 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 2.662 -9.366 9.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.018 4.018 4 C -0.037 4.037 5 N -0.174 5.174 6 C -0.443 4.443 7 H 0.103 0.897 8 C -0.172 4.172 9 N -0.534 5.534 10 Si 0.754 3.246 11 H -0.186 1.186 12 H -0.214 1.214 13 H -0.190 1.190 14 C 0.304 3.696 15 O -0.501 6.501 16 C -0.121 4.121 17 C -0.089 4.089 18 C -0.140 4.140 19 C -0.010 4.010 20 C -0.071 4.071 21 C -0.157 4.157 22 N -0.246 5.246 23 C -0.038 4.038 24 O -0.098 6.098 25 C -0.116 4.116 26 C -0.093 4.093 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.226 0.774 38 H 0.311 0.689 39 H 0.185 0.815 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.151 2.870 -9.800 10.276 hybrid contribution 0.255 0.022 1.768 1.787 sum -0.896 2.891 -8.032 8.583 Atomic orbital electron populations 1.22874 0.80309 1.03223 1.00530 1.88114 1.20782 1.27641 1.95390 1.22804 0.92961 0.85109 1.00895 1.22011 0.94531 0.98996 0.88133 1.43613 1.57616 1.07625 1.08550 1.18841 1.37746 0.81085 1.06617 0.89736 1.25759 0.96377 0.95880 0.99228 1.69721 1.42328 1.08740 1.32660 0.86178 0.78501 0.79449 0.80522 1.18572 1.21419 1.18958 1.18592 0.79761 0.85812 0.85465 1.90609 1.58267 1.14568 1.86656 1.20091 1.01092 0.97351 0.93591 1.21698 0.94862 0.92855 0.99489 1.21040 1.00957 1.00637 0.91326 1.17918 0.99207 0.95665 0.88232 1.21494 0.99621 0.89962 0.96067 1.23726 1.03221 1.02032 0.86761 1.70376 1.12911 1.05841 1.35428 1.29263 0.98584 1.00488 0.75502 1.84507 1.55298 1.38790 1.31237 1.20880 0.97637 0.94081 0.99052 1.20955 0.98571 0.99367 0.90449 0.89405 0.92459 0.93958 0.90186 0.93694 0.91191 0.88916 0.91212 0.84136 0.85138 0.77364 0.68876 0.81459 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -16.35 10.41 -148.98 -1.55 -17.90 16 3 C 0.06 2.24 6.25 71.98 0.45 2.69 16 4 C 0.09 3.68 4.25 86.38 0.37 4.04 16 5 N -0.46 -21.74 2.15 -639.24 -1.37 -23.12 16 6 C -0.32 -16.20 6.43 84.10 0.54 -15.66 16 7 H 0.09 4.73 6.44 -2.91 -0.02 4.72 16 8 C 0.03 1.63 5.40 84.96 0.46 2.09 16 9 N -0.90 -49.21 13.95 21.68 0.30 -48.90 16 10 Si 0.93 41.44 24.67 68.60 1.69 43.13 16 11 H -0.26 -10.98 6.66 99.48 0.66 -10.32 16 12 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.27 -11.87 7.02 99.48 0.70 -11.17 16 14 C 0.51 23.98 7.34 86.67 0.64 24.61 16 15 O -0.61 -29.91 16.43 -4.13 -0.07 -29.98 16 16 C -0.12 -4.93 5.48 -20.05 -0.11 -5.04 16 17 C -0.07 -2.90 7.67 22.27 0.17 -2.73 16 18 C -0.12 -4.28 9.67 22.26 0.22 -4.06 16 19 C -0.01 -0.28 5.88 -20.04 -0.12 -0.40 16 20 C -0.02 -0.51 7.06 24.21 0.17 -0.34 16 21 C -0.02 -0.42 11.29 83.83 0.95 0.52 16 22 N -0.52 -11.97 11.27 -315.00 -3.55 -15.52 16 23 C 0.19 3.45 13.21 130.45 1.72 5.17 16 24 O -0.21 -5.36 10.57 -7.72 -0.08 -5.44 16 25 C -0.10 -2.72 9.51 22.26 0.21 -2.51 16 26 C -0.07 -2.51 9.55 22.28 0.21 -2.30 16 27 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 3.09 3.03 -2.38 -0.01 3.08 16 33 H 0.09 3.78 7.52 -2.39 -0.02 3.76 16 34 H 0.28 14.32 8.31 -92.71 -0.77 13.54 16 35 H 0.14 6.52 5.59 -2.91 -0.02 6.50 16 36 H 0.13 4.34 7.93 -2.91 -0.02 4.32 16 37 H 0.21 3.52 7.29 -2.91 -0.02 3.50 16 38 H 0.30 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.17 3.13 7.02 -2.91 -0.02 3.11 16 40 H 0.14 4.39 7.98 -2.91 -0.02 4.37 16 Total: -1.00 -68.78 340.10 3.52 -65.26 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 1.03 Total: 24.33 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 7.12 Total: 8.15 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -4.62 Total: -87.54 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -1.70 Total: -53.32 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.69 Total: 43.13 kcal Total: -68.78 3.52 -65.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.467 kcal (2) G-P(sol) polarization free energy of solvation -68.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds