Wall clock time and date at job start Tue Mar 31 2020 12:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99904 * 2 1 4 4 C 1.53000 * 109.47006 * 180.02562 * 3 2 1 5 5 N 1.46512 * 109.46984 * 65.00385 * 4 3 2 6 6 C 1.36807 * 119.99457 * 269.99899 * 5 4 3 7 7 H 1.07993 * 120.00672 * 18.68909 * 6 5 4 8 8 C 1.39078 * 119.99529 * 198.69399 * 6 5 4 9 9 N 1.31358 * 119.99719 * 12.34623 * 8 6 5 10 10 Si 1.86797 * 119.99932 * 192.35119 * 8 6 5 11 11 H 1.48500 * 109.47226 * 89.99493 * 10 8 6 12 12 H 1.48504 * 109.47079 * 209.99935 * 10 8 6 13 13 H 1.48503 * 109.47106 * 329.99616 * 10 8 6 14 14 C 1.34768 * 119.99671 * 89.99914 * 5 4 3 15 15 O 1.21700 * 119.99732 * 233.81460 * 14 5 4 16 16 C 1.46980 * 120.00484 * 53.82301 * 14 5 4 17 17 C 1.43196 * 120.00036 * 5.19373 * 16 14 5 18 18 N 5.79237 * 151.40124 * 359.97438 * 2 1 3 19 19 C 1.37899 * 120.00136 * 185.19984 * 16 14 5 20 20 C 1.46413 * 119.99867 * 185.03200 * 19 16 14 21 21 C 1.40260 * 120.13051 * 213.98526 * 20 19 16 22 22 C 1.36598 * 119.85323 * 179.71578 * 21 20 19 23 23 C 1.39122 * 120.13921 * 0.56231 * 22 21 20 24 24 O 1.35681 * 119.86245 * 179.73703 * 23 22 21 25 25 C 1.39118 * 120.27650 * 359.71749 * 23 22 21 26 26 C 1.36607 * 120.13556 * 359.97438 * 25 23 22 27 27 H 1.08999 * 109.46639 * 299.99299 * 1 2 3 28 28 H 1.08991 * 109.47528 * 59.99609 * 1 2 3 29 29 H 1.09002 * 109.46614 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46641 * 60.00692 * 3 2 1 31 31 H 1.08997 * 109.47266 * 300.00368 * 3 2 1 32 32 H 1.08992 * 109.47414 * 305.00492 * 4 3 2 33 33 H 1.09000 * 109.47110 * 185.00060 * 4 3 2 34 34 H 0.96994 * 119.99456 * 184.97823 * 9 8 6 35 35 H 1.08001 * 120.00078 * 5.30838 * 19 16 14 36 36 H 1.07994 * 120.07461 * 0.02562 * 21 20 19 37 37 H 1.08000 * 119.93327 * 180.28173 * 22 21 20 38 38 H 0.96702 * 114.00270 * 269.97876 * 24 23 22 39 39 H 1.07994 * 119.93534 * 179.97438 * 25 23 22 40 40 H 1.08002 * 120.06713 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2529 6 6 4.0966 -0.7956 -1.3369 7 1 3.5971 -1.4277 -0.6177 8 6 4.8628 -1.3644 -2.3487 9 7 5.6608 -0.6109 -3.0706 10 14 4.7572 -3.1995 -2.6810 11 1 3.6913 -3.4608 -3.6815 12 1 6.0591 -3.6831 -3.2069 13 1 4.4372 -3.9135 -1.4189 14 6 4.2614 1.3339 -2.3218 15 8 3.7210 1.1159 -3.3903 16 6 5.2257 2.4361 -2.1973 17 6 5.9444 2.6238 -0.9731 18 7 6.5146 2.7726 -0.0012 19 6 5.4384 3.2895 -3.2595 20 6 6.4766 4.3184 -3.1753 21 6 6.2916 5.5584 -3.8040 22 6 7.2615 6.5164 -3.7170 23 6 8.4358 6.2598 -3.0166 24 8 9.3978 7.2135 -2.9383 25 6 8.6278 5.0297 -2.3958 26 6 7.6626 4.0659 -2.4703 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 -0.3632 -1.0277 0.0005 30 1 1.6886 1.8463 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5682 0.8408 33 1 3.9785 2.1765 0.0889 34 1 6.1402 -0.9934 -3.8221 35 1 4.8360 3.2018 -4.1516 36 1 5.3822 5.7573 -4.3515 37 1 7.1184 7.4733 -4.1968 38 1 10.0482 7.1758 -3.6529 39 1 9.5416 4.8363 -1.8539 40 1 7.8126 3.1114 -1.9876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491174637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:16 Heat of formation + Delta-G solvation = -42.127661 kcal Electronic energy + Delta-G solvation = -25984.559096 eV Core-core repulsion = 22151.865056 eV Total energy + Delta-G solvation = -3832.694040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01302 -40.43654 -38.68259 -38.25490 -37.29483 -36.23104 -34.25398 -33.84283 -32.22730 -30.58330 -30.10663 -27.35222 -26.73672 -25.17523 -23.97841 -23.61974 -22.37045 -21.72542 -19.73243 -19.41831 -18.08338 -17.28595 -17.24034 -17.10299 -16.62452 -16.46664 -16.30217 -15.86651 -15.76156 -15.57044 -15.47931 -15.12250 -14.61511 -14.33875 -14.00979 -13.82795 -13.53884 -13.52268 -13.29420 -13.28165 -12.99035 -12.81321 -12.76473 -12.75024 -12.68052 -12.49763 -12.09553 -11.91051 -11.42568 -11.00845 -10.72403 -10.55303 -10.39271 -10.12559 -9.35263 -9.13019 -8.21226 -5.63964 -0.69338 0.37767 0.61842 1.42103 1.47899 1.55198 1.66816 1.92476 2.36562 2.54929 2.79587 2.95036 3.06472 3.12163 3.25739 3.33044 3.72641 3.82690 3.92482 4.19657 4.22866 4.29461 4.41415 4.43990 4.48879 4.59893 4.62038 4.64823 4.78201 4.87383 4.92533 4.95899 5.02483 5.04012 5.33974 5.36263 5.52053 5.55033 5.77524 6.10422 6.39997 6.49577 6.83365 6.98197 7.30776 7.63315 8.06109 8.90630 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.004006 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.038337 B = 6988.191328 C = 7929.152073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.055 3.945 4 C 0.119 3.881 5 N -0.523 5.523 6 C -0.282 4.282 7 H 0.087 0.913 8 C -0.027 4.027 9 N -0.896 5.896 10 Si 0.980 3.020 11 H -0.286 1.286 12 H -0.286 1.286 13 H -0.263 1.263 14 C 0.595 3.405 15 O -0.559 6.559 16 C -0.110 4.110 17 C 0.285 3.715 18 N -0.458 5.458 19 C 0.036 3.964 20 C -0.107 4.107 21 C -0.062 4.062 22 C -0.144 4.144 23 C 0.123 3.877 24 O -0.505 6.505 25 C -0.158 4.158 26 C -0.094 4.094 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.265 0.735 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.414 0.586 39 H 0.133 0.867 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 14.022 -1.334 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.023 4.023 4 C -0.005 4.005 5 N -0.247 5.247 6 C -0.410 4.410 7 H 0.105 0.895 8 C -0.227 4.227 9 N -0.538 5.538 10 Si 0.806 3.194 11 H -0.212 1.212 12 H -0.211 1.211 13 H -0.187 1.187 14 C 0.387 3.613 15 O -0.438 6.438 16 C -0.118 4.118 17 C -0.027 4.027 18 N -0.136 5.136 19 C 0.011 3.989 20 C -0.107 4.107 21 C -0.080 4.080 22 C -0.162 4.162 23 C 0.078 3.922 24 O -0.319 6.319 25 C -0.176 4.176 26 C -0.112 4.112 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.182 0.818 36 H 0.184 0.816 37 H 0.182 0.818 38 H 0.275 0.725 39 H 0.151 0.849 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.434 14.038 0.053 14.045 hybrid contribution 0.143 -1.456 -0.884 1.710 sum 0.577 12.582 -0.832 12.623 Atomic orbital electron populations 1.22857 0.80355 1.03270 1.00364 1.88008 1.20776 1.28102 1.95379 1.23054 0.93833 0.85004 1.00420 1.21470 0.93199 0.97821 0.88041 1.42856 1.67444 1.05415 1.09005 1.19582 1.24956 0.81430 1.15040 0.89483 1.25861 0.94806 1.03399 0.98646 1.69476 1.26972 1.38340 1.19025 0.85092 0.76841 0.78953 0.78503 1.21221 1.21140 1.18726 1.16931 0.81075 0.79655 0.83675 1.90508 1.51801 1.70035 1.31494 1.18978 1.02309 1.00392 0.90072 1.25598 0.92117 0.92205 0.92775 1.81120 1.10645 1.10039 1.11814 1.23047 0.92298 0.87742 0.95820 1.19184 0.94281 0.95627 1.01589 1.21332 1.00058 0.90355 0.96267 1.21414 0.93422 1.01287 1.00118 1.18796 0.90477 0.86953 0.95999 1.84693 1.41106 1.51467 1.54664 1.21187 1.00580 0.93224 1.02628 1.21183 0.94001 0.99108 0.96951 0.92324 0.94470 0.89235 0.90060 0.94304 0.91444 0.90713 0.92420 0.81760 0.81615 0.81831 0.72534 0.84937 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -15.56 10.02 -148.98 -1.49 -17.05 16 3 C 0.05 1.93 6.28 71.98 0.45 2.38 16 4 C 0.12 4.91 5.51 86.38 0.48 5.38 16 5 N -0.52 -26.43 2.32 -639.73 -1.48 -27.92 16 6 C -0.28 -15.62 9.11 84.12 0.77 -14.85 16 7 H 0.09 4.77 7.69 -2.91 -0.02 4.75 16 8 C -0.03 -1.52 5.04 84.97 0.43 -1.09 16 9 N -0.90 -51.86 10.77 21.69 0.23 -51.63 16 10 Si 0.98 45.54 29.57 68.60 2.03 47.56 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 14 C 0.59 30.00 4.41 86.54 0.38 30.38 16 15 O -0.56 -31.38 15.83 -4.35 -0.07 -31.45 16 16 C -0.11 -4.64 5.65 -19.82 -0.11 -4.76 16 17 C 0.29 11.96 8.91 88.32 0.79 12.75 16 18 N -0.46 -19.40 18.10 19.01 0.34 -19.05 16 19 C 0.04 1.23 9.44 24.32 0.23 1.46 16 20 C -0.11 -3.09 5.52 -20.17 -0.11 -3.20 16 21 C -0.06 -1.29 9.75 22.38 0.22 -1.07 16 22 C -0.14 -2.66 9.92 22.10 0.22 -2.44 16 23 C 0.12 2.64 6.72 22.69 0.15 2.79 16 24 O -0.51 -8.76 13.48 -89.99 -1.21 -9.98 16 25 C -0.16 -4.16 9.92 22.10 0.22 -3.94 16 26 C -0.09 -2.96 8.24 22.38 0.18 -2.77 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.81 8.04 -2.39 -0.02 2.79 16 33 H 0.07 2.87 5.77 -2.39 -0.01 2.86 16 34 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.17 5.23 7.62 -2.91 -0.02 5.21 16 36 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.41 2.85 9.06 -74.06 -0.67 2.18 16 39 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.10 3.79 5.81 -2.91 -0.02 3.77 16 Total: -1.00 -75.30 354.05 4.30 -70.99 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.42 Total: 15.48 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 5.54 Total: 23.03 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -0.91 Total: -98.60 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -2.78 Total: -58.47 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.30 4.30 -70.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491174637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.865 kcal (2) G-P(sol) polarization free energy of solvation -75.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds