Wall clock time and date at job start Tue Mar 31 2020 10:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47361 * 27.07161 * 3 2 1 5 5 C 1.53001 * 109.46824 * 267.07235 * 3 2 1 6 6 N 1.46497 * 109.47081 * 147.07193 * 3 2 1 7 7 C 1.46504 * 119.99956 * 59.99634 * 6 3 2 8 8 C 1.34781 * 120.00074 * 239.99765 * 6 3 2 9 9 O 1.21360 * 119.99896 * 356.49809 * 8 6 3 10 10 C 1.49351 * 119.99727 * 176.49656 * 8 6 3 11 11 O 1.21376 * 120.00467 * 5.96279 * 10 8 6 12 12 N 1.34780 * 119.99754 * 185.96050 * 10 8 6 13 13 C 1.39718 * 119.99894 * 175.33136 * 12 10 8 14 14 C 1.39019 * 120.03996 * 214.83998 * 13 12 10 15 15 C 1.38151 * 120.05835 * 179.74967 * 14 13 12 16 16 C 1.38176 * 120.14433 * 0.55251 * 15 14 13 17 17 C 1.38927 * 120.08122 * 359.70360 * 16 15 14 18 18 O 1.35751 * 120.02738 * 179.97438 * 17 16 15 19 19 C 1.34834 * 117.00129 * 5.58616 * 18 17 16 20 20 H 1.07992 * 119.99833 * 5.33660 * 19 18 17 21 21 C 1.38647 * 119.99724 * 185.33034 * 19 18 17 22 22 N 1.31560 * 120.00349 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99810 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47276 * 90.00237 * 23 21 19 25 25 H 1.48503 * 109.46879 * 209.99900 * 23 21 19 26 26 H 1.48501 * 109.47078 * 330.00007 * 23 21 19 27 27 C 1.38757 * 119.93905 * 0.02562 * 17 16 15 28 28 H 4.18749 * 15.04096 * 0.02562 * 4 2 1 29 29 H 1.09005 * 109.47091 * 300.00091 * 5 3 2 30 30 H 1.09003 * 109.47508 * 60.00105 * 5 3 2 31 31 H 1.09000 * 109.47159 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.46912 * 95.96890 * 7 6 3 33 33 H 1.08992 * 109.47020 * 215.97052 * 7 6 3 34 34 H 1.09003 * 109.46958 * 335.97299 * 7 6 3 35 35 H 0.97002 * 119.99562 * 355.33534 * 12 10 8 36 36 H 1.08000 * 119.97240 * 0.02562 * 14 13 12 37 37 H 1.07995 * 119.92212 * 180.27654 * 15 14 13 38 38 H 1.08001 * 119.95913 * 179.72264 * 16 15 14 39 39 H 0.97006 * 120.00326 * 179.97438 * 22 21 19 40 40 H 1.08000 * 120.06929 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9143 -0.4677 5 6 3.1559 0.0746 1.4406 6 7 3.1338 1.1602 -0.7508 7 6 2.7792 2.5145 -0.3189 8 6 3.9088 0.9811 -1.8389 9 8 4.2550 -0.1369 -2.1598 10 6 4.3414 2.1585 -2.6495 11 8 4.0872 3.2830 -2.2700 12 7 5.0141 1.9723 -3.8025 13 6 5.3334 3.0671 -4.6096 14 6 5.3358 2.9343 -5.9935 15 6 5.6464 4.0180 -6.7921 16 6 5.9666 5.2336 -6.2184 17 6 5.9712 5.3715 -4.8360 18 8 6.2864 6.5661 -4.2735 19 6 6.4718 7.6069 -5.1104 20 1 6.2840 7.4898 -6.1675 21 6 6.9034 8.8273 -4.6139 22 7 7.1325 8.9698 -3.3263 23 14 7.1596 10.2695 -5.7733 24 1 5.8973 11.0434 -5.8871 25 1 8.2324 11.1478 -5.2413 26 1 7.5527 9.7638 -7.1131 27 6 5.6543 4.2868 -4.0308 28 1 -1.0501 -0.0007 -0.0009 29 1 2.7921 0.9895 1.9084 30 1 2.7930 -0.7882 1.9993 31 1 4.2459 0.0755 1.4407 32 1 3.5818 2.9215 0.2961 33 1 2.6344 3.1485 -1.1936 34 1 1.8575 2.4809 0.2621 35 1 5.2764 1.0781 -4.0719 36 1 5.0903 1.9844 -6.4448 37 1 5.6433 3.9136 -7.8669 38 1 6.2133 6.0776 -6.8454 39 1 7.4349 9.8236 -2.9789 40 1 5.6568 4.3918 -2.9559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491644822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:45 Heat of formation + Delta-G solvation = 12.853020 kcal Electronic energy + Delta-G solvation = -25268.581901 eV Core-core repulsion = 21438.272002 eV Total energy + Delta-G solvation = -3830.309898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13498 -39.49639 -38.44651 -37.06866 -36.56499 -34.30774 -33.25405 -32.27590 -30.82335 -29.66320 -28.67823 -27.19675 -25.73336 -25.20346 -23.43330 -22.04477 -21.22684 -20.06271 -18.50887 -18.34264 -17.80996 -17.19395 -17.02712 -16.27854 -15.74543 -15.37430 -15.13451 -14.91265 -14.60158 -14.24763 -14.09911 -13.83425 -13.58237 -13.34018 -13.09018 -12.88674 -12.75165 -12.55096 -12.41616 -12.00186 -11.74773 -11.62125 -11.43301 -11.16352 -11.05115 -10.92755 -10.74327 -10.55211 -10.47654 -9.89720 -9.56550 -9.26562 -9.02469 -8.83916 -7.79961 -7.24474 -6.45146 -4.04141 1.19944 1.84414 2.13246 2.30098 2.48064 2.73295 3.11314 3.13535 3.16969 3.18616 3.44931 3.91324 3.95968 4.25425 4.54160 4.73947 4.83657 4.99072 5.10022 5.23353 5.26060 5.43313 5.50356 5.58246 5.61571 5.74286 5.77965 5.87299 6.01552 6.06782 6.18786 6.30848 6.54391 6.68216 6.82672 6.96402 7.02908 7.22833 7.29339 7.33586 7.42335 7.62756 7.70883 7.99184 8.04815 8.99870 9.69934 10.72589 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.002844 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.865962 B = 9843.202582 C =10769.524536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.202 4.202 3 C 0.244 3.756 4 H 0.124 0.876 5 C -0.155 4.155 6 N -0.580 5.580 7 C 0.061 3.939 8 C 0.515 3.485 9 O -0.523 6.523 10 C 0.501 3.499 11 O -0.482 6.482 12 N -0.635 5.635 13 C 0.167 3.833 14 C -0.229 4.229 15 C -0.058 4.058 16 C -0.241 4.241 17 C 0.166 3.834 18 O -0.172 6.172 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.184 4.184 28 H 0.221 0.779 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.418 0.582 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.270 0.730 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 -16.160 4.767 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.203 4.203 3 C 0.141 3.859 4 H 0.141 0.859 5 C -0.213 4.213 6 N -0.314 5.314 7 C -0.080 4.080 8 C 0.298 3.702 9 O -0.399 6.399 10 C 0.282 3.718 11 O -0.356 6.356 12 N -0.282 5.282 13 C 0.074 3.926 14 C -0.250 4.250 15 C -0.077 4.077 16 C -0.261 4.261 17 C 0.111 3.889 18 O -0.075 6.075 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.205 4.205 28 H 0.237 0.763 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.085 0.915 35 H 0.255 0.745 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.147 0.853 39 H 0.080 0.920 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.798 -15.685 5.316 18.753 hybrid contribution -0.037 0.296 -0.714 0.774 sum -8.836 -15.389 4.602 18.332 Atomic orbital electron populations 1.25004 0.95871 0.98745 0.99701 1.23150 0.94309 1.01730 1.01159 1.17992 0.83557 0.90609 0.93712 0.85876 1.22095 1.02216 1.03387 0.93595 1.47785 1.48619 1.08441 1.26506 1.22475 1.00665 0.81279 1.03613 1.20163 0.79558 0.89260 0.81199 1.90741 1.54948 1.24959 1.69215 1.19986 0.79920 0.89340 0.82507 1.90767 1.52368 1.24242 1.68228 1.43008 1.53802 1.10819 1.20523 1.17171 0.99574 0.86593 0.89223 1.20306 1.14046 0.99695 0.90975 1.20521 0.96734 0.92038 0.98381 1.21230 1.11049 0.98871 0.94901 1.19116 0.91898 0.86918 0.90997 1.84001 1.74930 1.13344 1.35213 1.21339 1.46802 0.87423 0.91194 0.88981 1.25303 0.96228 0.98190 0.96783 1.70049 1.41867 1.25528 1.11978 0.85708 0.78450 0.79943 0.79295 1.19857 1.20259 1.19168 1.20148 1.08909 0.90995 1.00499 0.76272 0.91478 0.90640 0.90894 0.91452 0.87033 0.91512 0.74528 0.87093 0.86826 0.85310 0.91978 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 19.25 29.55 0.57 -0.91 16 2 C -0.20 -2.02 11.83 -37.12 -0.44 -2.45 16 3 C 0.24 2.43 3.09 -70.72 -0.22 2.21 16 4 H 0.12 1.28 6.90 -51.93 -0.36 0.92 16 5 C -0.16 -1.18 9.15 37.16 0.34 -0.84 16 6 N -0.58 -6.93 2.74 -177.71 -0.49 -7.42 16 7 C 0.06 0.70 8.56 59.85 0.51 1.21 16 8 C 0.52 7.17 7.73 -11.63 -0.09 7.08 16 9 O -0.52 -7.70 15.82 5.49 0.09 -7.61 16 10 C 0.50 7.91 7.61 -11.63 -0.09 7.82 16 11 O -0.48 -8.75 10.57 5.47 0.06 -8.69 16 12 N -0.64 -9.80 5.32 -10.31 -0.05 -9.85 16 13 C 0.17 3.09 6.29 -83.78 -0.53 2.56 16 14 C -0.23 -3.89 9.97 -39.32 -0.39 -4.28 16 15 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 16 C -0.24 -5.17 9.13 -39.35 -0.36 -5.53 16 17 C 0.17 4.05 6.64 -39.13 -0.26 3.79 16 18 O -0.17 -4.96 9.76 0.03 0.00 -4.96 16 19 C -0.39 -10.92 9.44 30.88 0.29 -10.62 16 20 H 0.09 2.36 5.28 -52.49 -0.28 2.08 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 23 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 C -0.18 -4.09 8.64 -39.19 -0.34 -4.43 16 28 H 0.22 1.07 7.80 -54.09 -0.42 0.65 16 29 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.11 1.52 5.36 -51.94 -0.28 1.24 16 34 H 0.07 0.64 7.28 -51.93 -0.38 0.26 16 35 H 0.42 5.33 8.30 -40.82 -0.34 4.99 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.13 2.75 5.70 -52.49 -0.30 2.45 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.14 3.14 6.22 -52.49 -0.33 2.81 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -32.73 351.00 -5.19 -37.92 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.33 Total: 9.27 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.49 Total: -4.84 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.22 Total: -41.77 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.15 Total: -21.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.73 -5.19 -37.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491644822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.770 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds