Wall clock time and date at job start Tue Mar 31 2020 10:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47361 * 27.07161 * 3 2 1 5 5 C 1.53001 * 109.46824 * 267.07235 * 3 2 1 6 6 N 1.46497 * 109.47081 * 147.07193 * 3 2 1 7 7 C 1.46504 * 119.99956 * 59.99634 * 6 3 2 8 8 C 1.34781 * 120.00074 * 239.99765 * 6 3 2 9 9 O 1.21360 * 119.99896 * 356.49809 * 8 6 3 10 10 C 1.49351 * 119.99727 * 176.49656 * 8 6 3 11 11 O 1.21376 * 120.00467 * 5.96279 * 10 8 6 12 12 N 1.34780 * 119.99754 * 185.96050 * 10 8 6 13 13 C 1.39718 * 119.99894 * 175.33136 * 12 10 8 14 14 C 1.39019 * 120.03996 * 214.83998 * 13 12 10 15 15 C 1.38151 * 120.05835 * 179.74967 * 14 13 12 16 16 C 1.38176 * 120.14433 * 0.55251 * 15 14 13 17 17 C 1.38927 * 120.08122 * 359.70360 * 16 15 14 18 18 O 1.35751 * 120.02738 * 179.97438 * 17 16 15 19 19 C 1.34834 * 117.00129 * 5.58616 * 18 17 16 20 20 H 1.07992 * 119.99833 * 5.33660 * 19 18 17 21 21 C 1.38647 * 119.99724 * 185.33034 * 19 18 17 22 22 N 1.31560 * 120.00349 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99810 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47276 * 90.00237 * 23 21 19 25 25 H 1.48503 * 109.46879 * 209.99900 * 23 21 19 26 26 H 1.48501 * 109.47078 * 330.00007 * 23 21 19 27 27 C 1.38757 * 119.93905 * 0.02562 * 17 16 15 28 28 H 4.18749 * 15.04096 * 0.02562 * 4 2 1 29 29 H 1.09005 * 109.47091 * 300.00091 * 5 3 2 30 30 H 1.09003 * 109.47508 * 60.00105 * 5 3 2 31 31 H 1.09000 * 109.47159 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.46912 * 95.96890 * 7 6 3 33 33 H 1.08992 * 109.47020 * 215.97052 * 7 6 3 34 34 H 1.09003 * 109.46958 * 335.97299 * 7 6 3 35 35 H 0.97002 * 119.99562 * 355.33534 * 12 10 8 36 36 H 1.08000 * 119.97240 * 0.02562 * 14 13 12 37 37 H 1.07995 * 119.92212 * 180.27654 * 15 14 13 38 38 H 1.08001 * 119.95913 * 179.72264 * 16 15 14 39 39 H 0.97006 * 120.00326 * 179.97438 * 22 21 19 40 40 H 1.08000 * 120.06929 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9143 -0.4677 5 6 3.1559 0.0746 1.4406 6 7 3.1338 1.1602 -0.7508 7 6 2.7792 2.5145 -0.3189 8 6 3.9088 0.9811 -1.8389 9 8 4.2550 -0.1369 -2.1598 10 6 4.3414 2.1585 -2.6495 11 8 4.0872 3.2830 -2.2700 12 7 5.0141 1.9723 -3.8025 13 6 5.3334 3.0671 -4.6096 14 6 5.3358 2.9343 -5.9935 15 6 5.6464 4.0180 -6.7921 16 6 5.9666 5.2336 -6.2184 17 6 5.9712 5.3715 -4.8360 18 8 6.2864 6.5661 -4.2735 19 6 6.4718 7.6069 -5.1104 20 1 6.2840 7.4898 -6.1675 21 6 6.9034 8.8273 -4.6139 22 7 7.1325 8.9698 -3.3263 23 14 7.1596 10.2695 -5.7733 24 1 5.8973 11.0434 -5.8871 25 1 8.2324 11.1478 -5.2413 26 1 7.5527 9.7638 -7.1131 27 6 5.6543 4.2868 -4.0308 28 1 -1.0501 -0.0007 -0.0009 29 1 2.7921 0.9895 1.9084 30 1 2.7930 -0.7882 1.9993 31 1 4.2459 0.0755 1.4407 32 1 3.5818 2.9215 0.2961 33 1 2.6344 3.1485 -1.1936 34 1 1.8575 2.4809 0.2621 35 1 5.2764 1.0781 -4.0719 36 1 5.0903 1.9844 -6.4448 37 1 5.6433 3.9136 -7.8669 38 1 6.2133 6.0776 -6.8454 39 1 7.4349 9.8236 -2.9789 40 1 5.6568 4.3918 -2.9559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491644822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:45 Heat of formation + Delta-G solvation = -9.275497 kcal Electronic energy + Delta-G solvation = -25269.541465 eV Core-core repulsion = 21438.272002 eV Total energy + Delta-G solvation = -3831.269463 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.36963 -40.93452 -39.97195 -38.37262 -37.88804 -35.71128 -34.26997 -34.11401 -31.58694 -31.25963 -30.26705 -28.19400 -27.40300 -26.60136 -24.52874 -23.50322 -22.78251 -21.32838 -20.08037 -19.32048 -19.16514 -18.63177 -18.27303 -17.42385 -17.13411 -16.77927 -16.64588 -16.15252 -15.95313 -15.84483 -15.47837 -15.22287 -15.01333 -14.52978 -14.33754 -14.25791 -13.95362 -13.73542 -13.52258 -13.24612 -13.18241 -12.88328 -12.70830 -12.69081 -12.50238 -12.34411 -12.11675 -11.66218 -11.46852 -11.27350 -11.24305 -10.77254 -10.51918 -10.12147 -9.40506 -8.94053 -8.45836 -6.14855 -0.08427 0.58674 0.69262 0.87394 1.36447 1.46129 1.54482 1.77167 1.80383 1.92113 2.18523 2.42701 2.81551 3.01989 3.17267 3.26782 3.53753 4.02563 4.05685 4.11981 4.16150 4.34982 4.37979 4.50025 4.60599 4.61112 4.69982 4.76742 4.86898 4.95829 5.03384 5.11310 5.12646 5.16961 5.32158 5.36982 5.61025 5.71721 5.73278 6.00905 6.04899 6.13916 6.47994 6.56768 6.77148 6.98200 7.79122 8.77595 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.002844 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.865962 B = 9843.202582 C =10769.524536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.244 4.244 3 C 0.241 3.759 4 H 0.118 0.882 5 C -0.150 4.150 6 N -0.573 5.573 7 C 0.065 3.935 8 C 0.520 3.480 9 O -0.531 6.531 10 C 0.498 3.502 11 O -0.509 6.509 12 N -0.626 5.626 13 C 0.174 3.826 14 C -0.200 4.200 15 C -0.047 4.047 16 C -0.249 4.249 17 C 0.128 3.872 18 O -0.231 6.231 19 C -0.413 4.413 20 H 0.106 0.894 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.249 1.249 27 C -0.205 4.205 28 H 0.252 0.748 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.433 0.567 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.126 0.874 39 H 0.272 0.728 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 -18.506 2.821 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.245 4.245 3 C 0.140 3.860 4 H 0.136 0.864 5 C -0.207 4.207 6 N -0.306 5.306 7 C -0.076 4.076 8 C 0.302 3.698 9 O -0.409 6.409 10 C 0.281 3.719 11 O -0.384 6.384 12 N -0.274 5.274 13 C 0.081 3.919 14 C -0.220 4.220 15 C -0.066 4.066 16 C -0.268 4.268 17 C 0.077 3.923 18 O -0.137 6.137 19 C -0.488 4.488 20 H 0.123 0.877 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.172 1.172 27 C -0.227 4.227 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.274 0.726 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.143 0.857 39 H 0.081 0.919 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.278 -18.124 3.364 21.105 hybrid contribution 0.237 0.652 -0.111 0.702 sum -10.041 -17.472 3.253 20.412 Atomic orbital electron populations 1.25826 0.96666 0.96709 0.97874 1.23281 0.94690 1.03577 1.02910 1.18149 0.84177 0.89216 0.94475 0.86431 1.22080 1.02013 1.04375 0.92271 1.47896 1.47541 1.09364 1.25754 1.22384 1.01685 0.80784 1.02753 1.19726 0.80155 0.88227 0.81653 1.90737 1.55682 1.24725 1.69720 1.20466 0.79335 0.89652 0.82459 1.90791 1.53174 1.25648 1.68837 1.42940 1.53516 1.10719 1.20248 1.17283 0.98143 0.86012 0.90504 1.20903 1.09927 1.01361 0.89812 1.21030 0.94390 0.90290 1.00866 1.21391 1.11319 1.00643 0.93471 1.19623 0.93328 0.86473 0.92878 1.83964 1.77980 1.14991 1.36785 1.21874 1.47064 0.88030 0.91878 0.87669 1.26648 0.95643 1.01213 0.98677 1.70209 1.44691 1.26555 1.14523 0.84561 0.78635 0.75519 0.77318 1.18907 1.19734 1.17231 1.20159 1.10571 0.92464 0.99459 0.73219 0.91235 0.88782 0.91154 0.91421 0.89281 0.89406 0.72626 0.82158 0.82116 0.85650 0.91870 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 19.25 74.32 1.43 -0.74 16 2 C -0.24 -4.42 11.83 31.13 0.37 -4.05 16 3 C 0.24 4.55 3.09 43.19 0.13 4.68 16 4 H 0.12 2.33 6.90 -2.38 -0.02 2.32 16 5 C -0.15 -2.09 9.15 71.98 0.66 -1.43 16 6 N -0.57 -13.41 2.74 -834.50 -2.29 -15.70 16 7 C 0.07 1.50 8.56 127.77 1.09 2.59 16 8 C 0.52 14.19 7.73 87.24 0.67 14.87 16 9 O -0.53 -15.04 15.82 -3.28 -0.05 -15.09 16 10 C 0.50 15.75 7.61 87.24 0.66 16.42 16 11 O -0.51 -19.28 10.57 -3.33 -0.04 -19.31 16 12 N -0.63 -18.46 5.32 -304.89 -1.62 -20.09 16 13 C 0.17 6.22 6.29 38.20 0.24 6.46 16 14 C -0.20 -5.94 9.97 22.44 0.22 -5.72 16 15 C -0.05 -1.52 10.03 22.23 0.22 -1.29 16 16 C -0.25 -10.60 9.13 22.42 0.20 -10.39 16 17 C 0.13 6.57 6.64 22.56 0.15 6.72 16 18 O -0.23 -14.28 9.76 -22.79 -0.22 -14.50 16 19 C -0.41 -24.21 9.44 67.92 0.64 -23.57 16 20 H 0.11 5.57 5.28 -2.91 -0.02 5.56 16 21 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 22 N -0.92 -57.54 13.67 21.61 0.30 -57.25 16 23 Si 1.02 42.95 29.55 68.60 2.03 44.98 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 26 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 27 C -0.21 -9.48 8.64 22.52 0.19 -9.28 16 28 H 0.25 1.54 7.80 -4.41 -0.03 1.50 16 29 H 0.07 0.94 7.67 -2.38 -0.02 0.92 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.54 8.14 -2.38 -0.02 1.53 16 33 H 0.09 2.52 5.36 -2.46 -0.01 2.50 16 34 H 0.09 1.62 7.28 -2.39 -0.02 1.60 16 35 H 0.43 9.96 8.30 -92.71 -0.77 9.19 16 36 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.13 5.35 5.70 -2.91 -0.02 5.33 16 39 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 40 H 0.11 5.55 6.22 -2.91 -0.02 5.53 16 Total: -1.00 -77.83 351.00 5.80 -72.04 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.33 Total: 30.59 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 7.37 Total: -5.67 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -3.61 Total: -93.03 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -0.31 Total: -48.91 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -77.83 5.80 -72.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491644822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.762 kcal (2) G-P(sol) polarization free energy of solvation -77.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds