Wall clock time and date at job start Tue Mar 31 2020 11:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35840 * 116.99849 * 2 1 4 4 C 1.39474 * 119.74287 * 359.97438 * 3 2 1 5 5 C 1.36299 * 120.55652 * 179.97438 * 4 3 2 6 6 C 1.40186 * 119.90990 * 0.03624 * 5 4 3 7 7 C 1.41521 * 133.26749 * 179.97438 * 6 5 4 8 8 C 1.35922 * 107.76179 * 180.02562 * 7 6 5 9 9 C 1.46909 * 125.44407 * 180.02562 * 8 7 6 10 10 O 1.21663 * 120.00378 * 0.29346 * 9 8 7 11 11 N 1.34780 * 119.99987 * 180.02562 * 9 8 7 12 12 C 1.47065 * 136.05926 * 359.62356 * 11 9 8 13 13 C 1.53241 * 88.08660 * 207.20965 * 12 11 9 14 14 O 1.42893 * 114.19737 * 87.72417 * 13 12 11 15 15 C 1.50697 * 114.32480 * 220.47223 * 13 12 11 16 16 H 1.07994 * 120.00096 * 99.23175 * 15 13 12 17 17 C 1.37875 * 119.99944 * 279.23464 * 15 13 12 18 18 N 1.31521 * 120.00199 * 10.18602 * 17 15 13 19 19 Si 1.86800 * 120.00178 * 190.18896 * 17 15 13 20 20 H 1.48496 * 109.47044 * 84.99524 * 19 17 15 21 21 H 1.48508 * 109.47035 * 204.99350 * 19 17 15 22 22 H 1.48498 * 109.46947 * 324.99312 * 19 17 15 23 23 C 1.47073 * 136.05787 * 180.02562 * 11 9 8 24 24 N 1.38311 * 109.10930 * 0.25824 * 8 7 6 25 25 H 0.97005 * 125.62669 * 179.71855 * 24 8 7 26 26 C 1.37520 * 108.74698 * 359.57101 * 24 8 7 27 27 C 1.38218 * 119.74082 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47292 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47196 * 299.99818 * 1 2 3 30 30 H 1.09002 * 109.47074 * 59.99901 * 1 2 3 31 31 H 1.07994 * 119.71757 * 359.97438 * 4 3 2 32 32 H 1.08006 * 120.04136 * 179.97438 * 5 4 3 33 33 H 1.08001 * 126.11567 * 359.95760 * 7 6 5 34 34 H 1.09004 * 113.46539 * 321.94317 * 12 11 9 35 35 H 1.08998 * 113.46888 * 92.37205 * 12 11 9 36 36 H 0.96703 * 113.99772 * 90.31495 * 14 13 12 37 37 H 0.96998 * 120.00277 * 180.02562 * 18 17 15 38 38 H 1.09001 * 113.46412 * 267.62060 * 23 11 9 39 39 H 1.09004 * 113.46610 * 38.00006 * 23 11 9 40 40 H 1.08000 * 120.11479 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2104 0.0000 4 6 1.2807 2.3766 -0.0005 5 6 1.8822 3.5998 0.0000 6 6 3.2811 3.6908 0.0003 7 6 4.1821 4.7822 0.0004 8 6 5.4442 4.2778 0.0001 9 6 6.6795 5.0731 0.0007 10 8 6.6206 6.2883 0.0068 11 7 7.8779 4.4565 -0.0001 12 6 8.3527 3.0646 0.0052 13 6 9.6276 3.5562 0.6990 14 8 9.5368 3.6060 2.1242 15 6 10.8936 2.9050 0.2051 16 1 11.5190 3.4154 -0.5124 17 6 11.2535 1.6575 0.6691 18 7 10.4039 0.9507 1.3819 19 14 12.9481 0.9713 0.2854 20 1 13.9226 1.4692 1.2891 21 1 12.9035 -0.5123 0.3322 22 1 13.3650 1.4115 -1.0702 23 6 9.2865 4.8796 0.0005 24 7 5.3798 2.8962 -0.0060 25 1 6.1411 2.2951 -0.0113 26 6 4.0584 2.5154 0.0001 27 6 3.4262 1.2765 -0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2029 2.3099 -0.0014 32 1 1.2818 4.4976 -0.0009 33 1 3.9145 5.8285 -0.0005 34 1 7.7497 2.4027 0.6267 35 1 8.5288 2.6623 -0.9924 36 1 9.8109 2.7898 2.5645 37 1 10.6572 0.0732 1.7086 38 1 9.7141 4.9660 -0.9984 39 1 9.4756 5.7582 0.6172 40 1 4.0122 0.3693 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527010343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:58 Heat of formation + Delta-G solvation = -17.559940 kcal Electronic energy + Delta-G solvation = -25703.454800 eV Core-core repulsion = 21871.826097 eV Total energy + Delta-G solvation = -3831.628703 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.49548 -39.79735 -39.17318 -37.43916 -35.67347 -34.19121 -32.41549 -32.03385 -29.91910 -29.35537 -28.25002 -26.98541 -25.62175 -25.37700 -23.31717 -21.86855 -21.06050 -20.03368 -19.07938 -18.29738 -17.72839 -16.88388 -16.43707 -15.88468 -15.73207 -15.49733 -15.26489 -15.08131 -14.74571 -14.34258 -14.05957 -13.75102 -13.61609 -13.32251 -13.07786 -12.76579 -12.62334 -12.33926 -12.19628 -12.02905 -11.90755 -11.87718 -11.14645 -11.08282 -10.83980 -10.81992 -10.60548 -10.41386 -9.91808 -9.57005 -9.28360 -9.01083 -8.54707 -8.19754 -8.07001 -7.45995 -6.51144 -4.60849 0.88056 1.57790 2.28211 2.82375 3.09788 3.18145 3.19328 3.32143 3.48328 3.69525 3.86705 4.11117 4.61474 4.68399 4.81648 4.86939 4.94367 4.94978 5.14066 5.25331 5.33599 5.37461 5.42032 5.53527 5.70617 5.86709 5.90820 6.02318 6.21075 6.22818 6.29071 6.36244 6.41049 6.47213 6.54837 6.74143 6.91297 6.99533 7.32309 7.50789 7.53078 7.65243 8.26254 8.43504 8.55521 9.10680 9.12704 10.55241 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.003366 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.092540 B = 8316.230504 C = 9782.176084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.148 3.852 4 C -0.227 4.227 5 C -0.023 4.023 6 C -0.147 4.147 7 C -0.114 4.114 8 C 0.034 3.966 9 C 0.601 3.399 10 O -0.545 6.545 11 N -0.635 5.635 12 C 0.070 3.930 13 C 0.243 3.757 14 O -0.564 6.564 15 C -0.542 4.542 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.890 5.890 19 Si 0.906 3.094 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.271 1.271 23 C 0.111 3.889 24 N -0.571 5.571 25 H 0.423 0.577 26 C 0.146 3.854 27 C -0.172 4.172 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.154 0.846 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.388 0.612 37 H 0.273 0.727 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.941 -2.179 -3.031 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.101 3.899 4 C -0.246 4.246 5 C -0.042 4.042 6 C -0.152 4.152 7 C -0.140 4.140 8 C -0.076 4.076 9 C 0.390 3.610 10 O -0.425 6.425 11 N -0.367 5.367 12 C -0.053 4.053 13 C 0.202 3.798 14 O -0.373 6.373 15 C -0.580 4.580 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.528 5.528 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.011 4.011 24 N -0.179 5.179 25 H 0.266 0.734 26 C 0.034 3.966 27 C -0.193 4.193 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.172 0.828 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.239 0.761 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.134 -1.242 -3.057 16.468 hybrid contribution 1.084 -1.385 -0.088 1.761 sum -15.050 -2.627 -3.145 15.598 Atomic orbital electron populations 1.23033 0.78465 1.03722 1.01361 1.86031 1.21253 1.26946 1.88836 1.18431 0.91124 0.84001 0.96320 1.20709 0.99757 0.92035 1.12136 1.20156 0.92070 0.97157 0.94767 1.18139 0.93374 0.92499 1.11162 1.20778 0.89330 0.98821 1.05083 1.20268 0.95274 0.81883 1.10161 1.16628 0.80638 0.86295 0.77413 1.90786 1.86153 1.12540 1.52972 1.49718 1.05049 1.11858 1.70107 1.24260 0.97669 0.81966 1.01427 1.19433 0.90921 0.89556 0.79929 1.86108 1.89674 1.42775 1.18753 1.21330 1.07033 1.02389 1.27212 0.90732 1.25091 0.97800 0.96049 0.94082 1.69746 1.34500 1.12494 1.36026 0.86380 0.83363 0.77821 0.79208 1.20051 1.21011 1.19564 1.23355 0.77099 1.00224 1.00419 1.42514 1.06432 1.06293 1.62618 0.73407 1.17864 0.83739 0.94170 1.00838 1.18946 0.91565 0.95438 1.13397 0.88432 0.92632 0.92667 0.85425 0.85424 0.82829 0.91908 0.89492 0.76119 0.91721 0.89181 0.91096 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.80 101.05 0.99 1.20 16 2 O -0.32 -3.68 10.48 -19.24 -0.20 -3.88 16 3 C 0.15 1.89 6.68 -39.13 -0.26 1.63 16 4 C -0.23 -2.52 8.95 -39.82 -0.36 -2.88 16 5 C -0.02 -0.27 10.05 -39.55 -0.40 -0.67 16 6 C -0.15 -2.20 6.16 -106.90 -0.66 -2.86 16 7 C -0.11 -1.85 10.53 -39.16 -0.41 -2.26 16 8 C 0.03 0.61 6.94 -82.26 -0.57 0.04 16 9 C 0.60 12.55 8.04 -12.75 -0.10 12.45 16 10 O -0.55 -12.57 17.61 5.22 0.09 -12.48 16 11 N -0.63 -13.18 3.69 -186.85 -0.69 -13.87 16 12 C 0.07 1.43 6.66 -8.64 -0.06 1.37 16 13 C 0.24 5.54 1.40 -91.40 -0.13 5.42 16 14 O -0.56 -13.75 13.56 -35.23 -0.48 -14.23 16 15 C -0.54 -12.89 8.65 -34.44 -0.30 -13.18 16 16 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 17 C 0.07 1.75 5.21 -17.82 -0.09 1.66 16 18 N -0.89 -21.46 11.81 55.43 0.65 -20.80 16 19 Si 0.91 18.72 29.55 -169.99 -5.02 13.70 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 23 C 0.11 2.32 8.03 -8.52 -0.07 2.25 16 24 N -0.57 -9.50 6.00 -7.36 -0.04 -9.55 16 25 H 0.42 6.85 5.77 -40.82 -0.24 6.61 16 26 C 0.15 2.28 7.25 -83.98 -0.61 1.67 16 27 C -0.17 -2.44 10.00 -39.27 -0.39 -2.83 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.05 0.33 7.64 -51.93 -0.40 -0.07 16 31 H 0.13 1.04 6.24 -52.49 -0.33 0.71 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.15 2.27 8.06 -52.49 -0.42 1.84 16 34 H 0.06 1.28 6.42 -51.93 -0.33 0.95 16 35 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 36 H 0.39 9.42 7.09 45.56 0.32 9.74 16 37 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 38 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -28.33 342.00 -7.82 -36.15 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -3.87 Total: 16.81 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -3.42 Total: 3.00 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.08 Total: -44.22 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.59 Total: -30.59 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.33 -7.82 -36.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527010343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.589 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds