Wall clock time and date at job start Tue Mar 31 2020 11:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35840 * 116.99849 * 2 1 4 4 C 1.39474 * 119.74287 * 359.97438 * 3 2 1 5 5 C 1.36299 * 120.55652 * 179.97438 * 4 3 2 6 6 C 1.40186 * 119.90990 * 0.03624 * 5 4 3 7 7 C 1.41521 * 133.26749 * 179.97438 * 6 5 4 8 8 C 1.35922 * 107.76179 * 180.02562 * 7 6 5 9 9 C 1.46909 * 125.44407 * 180.02562 * 8 7 6 10 10 O 1.21663 * 120.00378 * 0.29346 * 9 8 7 11 11 N 1.34780 * 119.99987 * 180.02562 * 9 8 7 12 12 C 1.47065 * 136.05926 * 359.62356 * 11 9 8 13 13 C 1.53241 * 88.08660 * 207.20965 * 12 11 9 14 14 O 1.42893 * 114.19737 * 87.72417 * 13 12 11 15 15 C 1.50697 * 114.32480 * 220.47223 * 13 12 11 16 16 H 1.07994 * 120.00096 * 99.23175 * 15 13 12 17 17 C 1.37875 * 119.99944 * 279.23464 * 15 13 12 18 18 N 1.31521 * 120.00199 * 10.18602 * 17 15 13 19 19 Si 1.86800 * 120.00178 * 190.18896 * 17 15 13 20 20 H 1.48496 * 109.47044 * 84.99524 * 19 17 15 21 21 H 1.48508 * 109.47035 * 204.99350 * 19 17 15 22 22 H 1.48498 * 109.46947 * 324.99312 * 19 17 15 23 23 C 1.47073 * 136.05787 * 180.02562 * 11 9 8 24 24 N 1.38311 * 109.10930 * 0.25824 * 8 7 6 25 25 H 0.97005 * 125.62669 * 179.71855 * 24 8 7 26 26 C 1.37520 * 108.74698 * 359.57101 * 24 8 7 27 27 C 1.38218 * 119.74082 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47292 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47196 * 299.99818 * 1 2 3 30 30 H 1.09002 * 109.47074 * 59.99901 * 1 2 3 31 31 H 1.07994 * 119.71757 * 359.97438 * 4 3 2 32 32 H 1.08006 * 120.04136 * 179.97438 * 5 4 3 33 33 H 1.08001 * 126.11567 * 359.95760 * 7 6 5 34 34 H 1.09004 * 113.46539 * 321.94317 * 12 11 9 35 35 H 1.08998 * 113.46888 * 92.37205 * 12 11 9 36 36 H 0.96703 * 113.99772 * 90.31495 * 14 13 12 37 37 H 0.96998 * 120.00277 * 180.02562 * 18 17 15 38 38 H 1.09001 * 113.46412 * 267.62060 * 23 11 9 39 39 H 1.09004 * 113.46610 * 38.00006 * 23 11 9 40 40 H 1.08000 * 120.11479 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2104 0.0000 4 6 1.2807 2.3766 -0.0005 5 6 1.8822 3.5998 0.0000 6 6 3.2811 3.6908 0.0003 7 6 4.1821 4.7822 0.0004 8 6 5.4442 4.2778 0.0001 9 6 6.6795 5.0731 0.0007 10 8 6.6206 6.2883 0.0068 11 7 7.8779 4.4565 -0.0001 12 6 8.3527 3.0646 0.0052 13 6 9.6276 3.5562 0.6990 14 8 9.5368 3.6060 2.1242 15 6 10.8936 2.9050 0.2051 16 1 11.5190 3.4154 -0.5124 17 6 11.2535 1.6575 0.6691 18 7 10.4039 0.9507 1.3819 19 14 12.9481 0.9713 0.2854 20 1 13.9226 1.4692 1.2891 21 1 12.9035 -0.5123 0.3322 22 1 13.3650 1.4115 -1.0702 23 6 9.2865 4.8796 0.0005 24 7 5.3798 2.8962 -0.0060 25 1 6.1411 2.2951 -0.0113 26 6 4.0584 2.5154 0.0001 27 6 3.4262 1.2765 -0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2029 2.3099 -0.0014 32 1 1.2818 4.4976 -0.0009 33 1 3.9145 5.8285 -0.0005 34 1 7.7497 2.4027 0.6267 35 1 8.5288 2.6623 -0.9924 36 1 9.8109 2.7898 2.5645 37 1 10.6572 0.0732 1.7086 38 1 9.7141 4.9660 -0.9984 39 1 9.4756 5.7582 0.6172 40 1 4.0122 0.3693 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527010343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:57 Heat of formation + Delta-G solvation = -37.092945 kcal Electronic energy + Delta-G solvation = -25704.301815 eV Core-core repulsion = 21871.826097 eV Total energy + Delta-G solvation = -3832.475718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.69040 -41.26402 -40.26555 -39.08695 -36.71001 -36.00041 -34.26921 -33.13723 -31.28356 -30.54051 -29.53474 -27.82314 -27.25381 -27.04474 -24.57427 -23.02349 -22.26931 -21.53207 -20.55315 -19.49902 -19.26949 -18.44493 -17.68149 -17.12045 -16.82421 -16.75313 -16.58063 -16.52356 -16.15154 -15.99200 -15.41469 -15.01677 -14.72411 -14.69847 -14.43164 -14.24319 -14.08685 -13.84607 -13.64621 -13.22539 -12.91005 -12.87633 -12.80251 -12.72394 -12.28036 -12.25126 -11.73988 -11.72728 -11.61162 -11.03653 -10.82874 -10.71238 -10.32060 -9.77760 -9.25094 -8.59996 -8.31849 -6.47346 -0.27601 0.55157 1.01325 1.45474 1.49894 1.56972 1.67268 1.82776 2.21957 2.38645 2.52503 2.81554 2.89740 3.30205 3.60546 3.65778 3.97253 4.02080 4.04528 4.24290 4.31725 4.36852 4.46303 4.48842 4.50673 4.52742 4.62832 4.72077 4.73850 4.80920 4.83933 4.92742 5.12828 5.24119 5.40408 5.43047 5.60280 5.66935 5.82812 5.87390 6.28774 6.46497 6.58206 6.63537 6.93266 7.22448 7.26726 8.73870 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.003366 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.092540 B = 8316.230504 C = 9782.176084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.159 3.841 4 C -0.219 4.219 5 C -0.014 4.014 6 C -0.168 4.168 7 C -0.096 4.096 8 C -0.006 4.006 9 C 0.598 3.402 10 O -0.576 6.576 11 N -0.637 5.637 12 C 0.085 3.915 13 C 0.225 3.775 14 O -0.577 6.577 15 C -0.557 4.557 16 H 0.076 0.924 17 C 0.038 3.962 18 N -0.907 5.907 19 Si 0.964 3.036 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.267 1.267 23 C 0.111 3.889 24 N -0.576 5.576 25 H 0.420 0.580 26 C 0.138 3.862 27 C -0.201 4.201 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.384 0.616 37 H 0.274 0.726 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.360 -2.933 -3.622 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.112 3.888 4 C -0.238 4.238 5 C -0.032 4.032 6 C -0.172 4.172 7 C -0.123 4.123 8 C -0.114 4.114 9 C 0.390 3.610 10 O -0.458 6.458 11 N -0.369 5.369 12 C -0.037 4.037 13 C 0.184 3.816 14 O -0.386 6.386 15 C -0.595 4.595 16 H 0.094 0.906 17 C -0.164 4.164 18 N -0.545 5.545 19 Si 0.790 3.210 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.011 4.011 24 N -0.183 5.183 25 H 0.262 0.738 26 C 0.026 3.974 27 C -0.223 4.223 28 H 0.135 0.865 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.183 0.817 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.235 0.765 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.571 -2.006 -3.655 19.034 hybrid contribution 1.606 -1.250 0.112 2.038 sum -16.966 -3.256 -3.543 17.635 Atomic orbital electron populations 1.23420 0.75858 1.05690 1.02783 1.86032 1.23944 1.26480 1.88240 1.18633 0.90807 0.85209 0.94154 1.21109 1.01564 0.90842 1.10313 1.20562 0.90833 0.98955 0.92885 1.18372 0.94767 0.91475 1.12573 1.21036 0.88934 0.99757 1.02571 1.19964 0.94650 0.82575 1.14217 1.17012 0.81244 0.86255 0.76517 1.90744 1.86691 1.13762 1.54603 1.49723 1.05113 1.11796 1.70300 1.24044 0.96398 0.81871 1.01426 1.19663 0.91754 0.90933 0.79253 1.86097 1.89803 1.42708 1.19949 1.21525 1.07629 1.02754 1.27604 0.90585 1.25709 1.00483 0.96247 0.94001 1.69814 1.35616 1.12670 1.36434 0.85466 0.79636 0.77014 0.78912 1.20298 1.20926 1.19165 1.23390 0.77612 0.99032 1.01061 1.42406 1.06937 1.05645 1.63341 0.73810 1.18155 0.83313 0.95146 1.00803 1.19067 0.92708 0.94958 1.15564 0.86485 0.91196 0.91087 0.81631 0.82069 0.81684 0.92170 0.88673 0.76507 0.91613 0.87280 0.91954 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.80 113.37 1.11 1.28 16 2 O -0.33 -6.84 10.48 -91.76 -0.96 -7.81 16 3 C 0.16 3.69 6.68 22.56 0.15 3.84 16 4 C -0.22 -4.02 8.95 22.12 0.20 -3.82 16 5 C -0.01 -0.29 10.05 22.29 0.22 -0.06 16 6 C -0.17 -4.79 6.16 -21.34 -0.13 -4.92 16 7 C -0.10 -3.08 10.53 22.54 0.24 -2.84 16 8 C -0.01 -0.21 6.94 39.85 0.28 0.07 16 9 C 0.60 25.71 8.04 86.51 0.70 26.40 16 10 O -0.58 -27.28 17.61 -4.23 -0.07 -27.35 16 11 N -0.64 -27.18 3.69 -863.78 -3.19 -30.37 16 12 C 0.09 3.59 6.66 83.09 0.55 4.14 16 13 C 0.23 10.47 1.40 -11.30 -0.02 10.45 16 14 O -0.58 -28.92 13.56 -148.98 -2.02 -30.94 16 15 C -0.56 -26.66 8.65 25.60 0.22 -26.44 16 16 H 0.08 3.53 7.83 -2.91 -0.02 3.51 16 17 C 0.04 1.79 5.21 84.65 0.44 2.23 16 18 N -0.91 -44.06 11.81 21.45 0.25 -43.80 16 19 Si 0.96 38.21 29.55 68.60 2.03 40.24 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 23 C 0.11 4.75 8.03 83.17 0.67 5.42 16 24 N -0.58 -19.69 6.00 -177.19 -1.06 -20.75 16 25 H 0.42 14.22 5.77 -92.70 -0.53 13.69 16 26 C 0.14 4.28 7.25 39.11 0.28 4.56 16 27 C -0.20 -5.60 10.00 22.47 0.22 -5.37 16 28 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.54 7.65 -2.38 -0.02 0.52 16 30 H 0.07 0.53 7.64 -2.39 -0.02 0.51 16 31 H 0.17 1.76 6.24 -2.91 -0.02 1.74 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.17 4.73 8.06 -2.91 -0.02 4.71 16 34 H 0.06 2.54 6.42 -2.39 -0.02 2.53 16 35 H 0.10 3.80 8.10 -2.39 -0.02 3.78 16 36 H 0.38 19.27 7.09 -74.06 -0.53 18.75 16 37 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 38 H 0.11 4.18 8.10 -2.39 -0.02 4.16 16 39 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -61.47 342.00 0.16 -61.32 By element: Atomic # 1 Polarization: 44.48 SS G_CDS: 0.05 Total: 44.53 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 5.14 Total: 14.94 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -4.00 Total: -94.92 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -3.06 Total: -66.10 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -61.47 0.16 -61.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527010343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.222 kcal (2) G-P(sol) polarization free energy of solvation -61.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds