Wall clock time and date at job start Tue Mar 31 2020 11:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47008 * 2 1 4 4 C 1.46500 * 119.99811 * 269.99478 * 3 2 1 5 5 C 1.50698 * 109.47539 * 270.00356 * 4 3 2 6 6 H 1.07994 * 119.99937 * 359.97438 * 5 4 3 7 7 C 1.37884 * 120.00112 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99894 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00079 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47046 * 89.99795 * 9 7 5 11 11 H 1.48490 * 109.47356 * 209.99686 * 9 7 5 12 12 H 1.48500 * 109.47038 * 330.00278 * 9 7 5 13 13 C 1.34778 * 120.00177 * 90.00267 * 3 2 1 14 14 O 1.21284 * 120.00015 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99811 * 359.97438 * 13 3 2 16 16 C 1.50703 * 109.47041 * 180.02562 * 15 13 3 17 17 C 1.38220 * 120.41702 * 264.99855 * 16 15 13 18 18 N 1.31860 * 120.76174 * 179.97438 * 17 16 15 19 19 C 1.31880 * 121.72574 * 359.97438 * 18 17 16 20 20 C 1.38185 * 120.76785 * 359.97438 * 19 18 17 21 21 C 1.38625 * 120.41524 * 84.95266 * 16 15 13 22 22 C 1.50699 * 120.79555 * 0.02769 * 21 16 15 23 23 F 1.39901 * 109.46994 * 180.02562 * 22 21 16 24 24 F 1.39899 * 109.46800 * 299.99641 * 22 21 16 25 25 F 1.39896 * 109.47074 * 59.99542 * 22 21 16 26 26 H 1.08999 * 109.47304 * 60.00091 * 1 2 3 27 27 H 1.09007 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46938 * 299.99992 * 1 2 3 29 29 H 1.09004 * 109.46896 * 239.99842 * 2 1 3 30 30 H 1.09006 * 109.46983 * 120.00063 * 2 1 3 31 31 H 1.09002 * 109.47334 * 30.00771 * 4 3 2 32 32 H 1.09003 * 109.46903 * 150.00281 * 4 3 2 33 33 H 0.97001 * 120.00356 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47362 * 59.99777 * 15 13 3 35 35 H 1.09005 * 109.47184 * 299.99847 * 15 13 3 36 36 H 1.08001 * 119.62033 * 359.95681 * 17 16 15 37 37 H 1.08003 * 119.62232 * 180.02562 * 19 18 17 38 38 H 1.07995 * 120.42231 * 179.74997 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1264 -3.6177 9 14 5.9138 2.0974 -3.4164 10 1 5.9777 0.8766 -4.2596 11 1 6.3928 3.2650 -4.1989 12 1 6.7737 1.9174 -2.2191 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9913 1.3063 2.4723 16 6 2.3173 2.2298 3.6177 17 6 3.5619 2.1884 4.2176 18 7 3.8546 2.9936 5.2200 19 6 2.9815 3.8642 5.6878 20 6 1.7178 3.9635 5.1374 21 6 1.3731 3.1321 4.0823 22 6 0.0050 3.2087 3.4551 23 9 -0.7504 4.1924 4.1025 24 9 0.1308 3.5344 2.1003 25 9 -0.6351 1.9711 3.5797 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5817 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.6755 3.5169 -4.4436 34 1 2.6212 0.4185 2.5302 35 1 0.9432 1.0125 2.5299 36 1 4.3031 1.4882 3.8615 37 1 3.2574 4.5078 6.5100 38 1 1.0058 4.6757 5.5275 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584538512.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:43 Heat of formation + Delta-G solvation = -148.347388 kcal Electronic energy + Delta-G solvation = -27666.828650 eV Core-core repulsion = 23287.671837 eV Total energy + Delta-G solvation = -4379.156813 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.24193 -47.81082 -47.57643 -40.62376 -38.93353 -35.37350 -34.04586 -32.87628 -32.42886 -30.11880 -28.82640 -26.99379 -26.28474 -23.49245 -23.00914 -22.80762 -21.86971 -18.80169 -18.67251 -18.49306 -18.30036 -16.73256 -16.43236 -16.32550 -15.88250 -15.45280 -15.12754 -14.67881 -14.56707 -14.40867 -14.27539 -14.09514 -13.96972 -13.76529 -13.65764 -13.45691 -13.31373 -13.05414 -12.63415 -12.30007 -12.10127 -11.98011 -11.74215 -11.54644 -11.19096 -10.92325 -10.74927 -10.52826 -10.25668 -10.13845 -9.77466 -9.64689 -9.36275 -8.86413 -8.43945 -7.68976 -6.04717 -4.09556 0.67324 0.86436 2.51469 3.29273 3.32771 3.36854 3.40285 3.41822 3.56387 3.86122 3.92312 4.21317 4.35899 4.44113 4.52663 4.57377 4.78678 5.01709 5.10294 5.19978 5.27788 5.30252 5.47034 5.53614 5.57365 5.63762 5.74716 5.87321 6.02194 6.21672 6.35499 6.47932 7.04414 7.44781 7.52402 7.69088 7.91346 8.22674 8.37589 8.88140 9.04593 9.55456 11.03379 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.004611 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.177537 B = 6070.632920 C = 6818.484570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.511 3.489 14 O -0.529 6.529 15 C -0.126 4.126 16 C -0.053 4.053 17 C 0.117 3.883 18 N -0.460 5.460 19 C 0.094 3.906 20 C -0.126 4.126 21 C -0.127 4.127 22 C 0.506 3.494 23 F -0.177 7.177 24 F -0.154 7.154 25 F -0.176 7.176 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.244 -4.625 17.436 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.297 3.703 14 O -0.405 6.405 15 C -0.167 4.167 16 C -0.056 4.056 17 C -0.041 4.041 18 N -0.168 5.168 19 C -0.062 4.062 20 C -0.146 4.146 21 C -0.136 4.136 22 C 0.452 3.548 23 F -0.158 7.158 24 F -0.135 7.135 25 F -0.157 7.157 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.240 -3.936 17.594 19.078 hybrid contribution -0.187 -0.105 -0.986 1.009 sum -6.427 -4.040 16.608 18.261 Atomic orbital electron populations 1.22230 0.96746 1.01489 1.02392 1.21455 0.93586 0.84183 1.02760 1.48204 1.63600 1.13245 1.07524 1.19276 0.96252 0.93673 0.77909 1.21421 0.96882 1.31925 1.06270 0.92473 1.24932 0.97822 0.94901 0.96426 1.69931 1.35703 1.33375 1.14307 0.86507 0.84708 0.77675 0.78596 1.20636 1.21109 1.19904 1.19803 0.79186 0.86933 0.84415 1.90707 1.45327 1.17605 1.86903 1.21077 1.05048 0.98734 0.91793 1.20214 0.94382 0.95375 0.95617 1.22728 0.93635 0.96537 0.91195 1.67697 1.34527 1.03757 1.10773 1.22780 0.88849 0.95730 0.98860 1.21983 0.99141 0.98384 0.95106 1.20236 0.93614 1.00450 0.99329 1.18199 0.85356 0.73768 0.77498 1.93159 1.78350 1.62847 1.81481 1.93372 1.95855 1.92233 1.32069 1.93170 1.83703 1.43084 1.95785 0.91928 0.92048 0.93183 0.89723 0.91757 0.94977 0.93857 0.92718 0.87090 0.87714 0.81599 0.81663 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.24 2.46 -175.06 -0.43 -12.67 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.51 10.28 6.24 -10.99 -0.07 10.21 16 14 O -0.53 -12.99 14.82 5.55 0.08 -12.91 16 15 C -0.13 -1.81 3.78 -29.03 -0.11 -1.92 16 16 C -0.05 -0.76 4.36 -104.48 -0.46 -1.22 16 17 C 0.12 1.58 10.84 -17.55 -0.19 1.39 16 18 N -0.46 -6.16 10.36 -13.25 -0.14 -6.30 16 19 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 20 C -0.13 -1.44 9.50 -39.44 -0.37 -1.82 16 21 C -0.13 -1.76 5.40 -104.32 -0.56 -2.32 16 22 C 0.51 7.17 2.85 36.00 0.10 7.27 16 23 F -0.18 -2.29 16.08 2.25 0.04 -2.25 16 24 F -0.15 -2.73 14.54 2.25 0.03 -2.70 16 25 F -0.18 -2.28 15.45 2.25 0.03 -2.24 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.65 7.22 -51.93 -0.37 0.28 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.11 1.26 7.32 -51.93 -0.38 0.88 16 35 H 0.10 1.36 4.96 -51.93 -0.26 1.10 16 36 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.15 1.30 7.27 -52.49 -0.38 0.92 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -34.01 333.48 -5.78 -39.78 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.19 Total: -1.78 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.95 Total: 5.11 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.17 Total: -44.82 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.10 Total: -7.19 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.01 -5.78 -39.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584538512.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.564 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds