Wall clock time and date at job start Tue Mar 31 2020 11:05:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46493 * 109.47008 * 2 1
4 4 C 1.46500 * 119.99811 * 269.99478 * 3 2 1
5 5 C 1.50698 * 109.47539 * 270.00356 * 4 3 2
6 6 H 1.07994 * 119.99937 * 359.97438 * 5 4 3
7 7 C 1.37884 * 120.00112 * 180.02562 * 5 4 3
8 8 N 1.31509 * 119.99894 * 359.97438 * 7 5 4
9 9 Si 1.86794 * 120.00079 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.47046 * 89.99795 * 9 7 5
11 11 H 1.48490 * 109.47356 * 209.99686 * 9 7 5
12 12 H 1.48500 * 109.47038 * 330.00278 * 9 7 5
13 13 C 1.34778 * 120.00177 * 90.00267 * 3 2 1
14 14 O 1.21284 * 120.00015 * 179.97438 * 13 3 2
15 15 C 1.50699 * 119.99811 * 359.97438 * 13 3 2
16 16 C 1.50703 * 109.47041 * 180.02562 * 15 13 3
17 17 C 1.38220 * 120.41702 * 264.99855 * 16 15 13
18 18 N 1.31860 * 120.76174 * 179.97438 * 17 16 15
19 19 C 1.31880 * 121.72574 * 359.97438 * 18 17 16
20 20 C 1.38185 * 120.76785 * 359.97438 * 19 18 17
21 21 C 1.38625 * 120.41524 * 84.95266 * 16 15 13
22 22 C 1.50699 * 120.79555 * 0.02769 * 21 16 15
23 23 F 1.39901 * 109.46994 * 180.02562 * 22 21 16
24 24 F 1.39899 * 109.46800 * 299.99641 * 22 21 16
25 25 F 1.39896 * 109.47074 * 59.99542 * 22 21 16
26 26 H 1.08999 * 109.47304 * 60.00091 * 1 2 3
27 27 H 1.09007 * 109.47175 * 179.97438 * 1 2 3
28 28 H 1.08995 * 109.46938 * 299.99992 * 1 2 3
29 29 H 1.09004 * 109.46896 * 239.99842 * 2 1 3
30 30 H 1.09006 * 109.46983 * 120.00063 * 2 1 3
31 31 H 1.09002 * 109.47334 * 30.00771 * 4 3 2
32 32 H 1.09003 * 109.46903 * 150.00281 * 4 3 2
33 33 H 0.97001 * 120.00356 * 180.02562 * 8 7 5
34 34 H 1.09002 * 109.47362 * 59.99777 * 15 13 3
35 35 H 1.09005 * 109.47184 * 299.99847 * 15 13 3
36 36 H 1.08001 * 119.62033 * 359.95681 * 17 16 15
37 37 H 1.08003 * 119.62232 * 180.02562 * 19 18 17
38 38 H 1.07995 * 120.42231 * 179.74997 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2626 2.0717 -1.2687
5 6 3.6858 1.8349 -1.7038
6 1 4.3429 1.2308 -1.0958
7 6 4.1495 2.3903 -2.8775
8 7 3.3495 3.1264 -3.6177
9 14 5.9138 2.0974 -3.4164
10 1 5.9777 0.8766 -4.2596
11 1 6.3928 3.2650 -4.1989
12 1 6.7737 1.9174 -2.2191
13 6 2.2430 2.0165 1.1672
14 8 2.6477 3.1599 1.1672
15 6 1.9913 1.3063 2.4723
16 6 2.3173 2.2298 3.6177
17 6 3.5619 2.1884 4.2176
18 7 3.8546 2.9936 5.2200
19 6 2.9815 3.8642 5.6878
20 6 1.7178 3.9635 5.1374
21 6 1.3731 3.1321 4.0823
22 6 0.0050 3.2087 3.4551
23 9 -0.7504 4.1924 4.1025
24 9 0.1308 3.5344 2.1003
25 9 -0.6351 1.9711 3.5797
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 1.8933 -0.5139 -0.8900
30 1 1.8934 -0.5139 0.8900
31 1 1.5817 1.6876 -2.0284
32 1 2.0956 3.1410 -1.1384
33 1 3.6755 3.5169 -4.4436
34 1 2.6212 0.4185 2.5302
35 1 0.9432 1.0125 2.5299
36 1 4.3031 1.4882 3.8615
37 1 3.2574 4.5078 6.5100
38 1 1.0058 4.6757 5.5275
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000584538512.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:43
Heat of formation + Delta-G solvation = -148.347388 kcal
Electronic energy + Delta-G solvation = -27666.828650 eV
Core-core repulsion = 23287.671837 eV
Total energy + Delta-G solvation = -4379.156813 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.114 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-50.24193 -47.81082 -47.57643 -40.62376 -38.93353 -35.37350 -34.04586 -32.87628
-32.42886 -30.11880 -28.82640 -26.99379 -26.28474 -23.49245 -23.00914 -22.80762
-21.86971 -18.80169 -18.67251 -18.49306 -18.30036 -16.73256 -16.43236 -16.32550
-15.88250 -15.45280 -15.12754 -14.67881 -14.56707 -14.40867 -14.27539 -14.09514
-13.96972 -13.76529 -13.65764 -13.45691 -13.31373 -13.05414 -12.63415 -12.30007
-12.10127 -11.98011 -11.74215 -11.54644 -11.19096 -10.92325 -10.74927 -10.52826
-10.25668 -10.13845 -9.77466 -9.64689 -9.36275 -8.86413 -8.43945 -7.68976
-6.04717 -4.09556 0.67324 0.86436 2.51469 3.29273 3.32771 3.36854
3.40285 3.41822 3.56387 3.86122 3.92312 4.21317 4.35899 4.44113
4.52663 4.57377 4.78678 5.01709 5.10294 5.19978 5.27788 5.30252
5.47034 5.53614 5.57365 5.63762 5.74716 5.87321 6.02194 6.21672
6.35499 6.47932 7.04414 7.44781 7.52402 7.69088 7.91346 8.22674
8.37589 8.88140 9.04593 9.55456 11.03379
Molecular weight = 316.11amu
Principal moments of inertia in cm(-1)
A = 0.015620 B = 0.004611 C = 0.004105
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1792.177537 B = 6070.632920 C = 6818.484570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.104 3.896
3 N -0.594 5.594
4 C 0.248 3.752
5 C -0.526 4.526
6 H 0.057 0.943
7 C 0.061 3.939
8 N -0.894 5.894
9 Si 0.897 3.103
10 H -0.280 1.280
11 H -0.285 1.285
12 H -0.274 1.274
13 C 0.511 3.489
14 O -0.529 6.529
15 C -0.126 4.126
16 C -0.053 4.053
17 C 0.117 3.883
18 N -0.460 5.460
19 C 0.094 3.906
20 C -0.126 4.126
21 C -0.127 4.127
22 C 0.506 3.494
23 F -0.177 7.177
24 F -0.154 7.154
25 F -0.176 7.176
26 H 0.062 0.938
27 H 0.061 0.939
28 H 0.049 0.951
29 H 0.084 0.916
30 H 0.064 0.936
31 H 0.032 0.968
32 H 0.043 0.957
33 H 0.263 0.737
34 H 0.111 0.889
35 H 0.105 0.895
36 H 0.167 0.833
37 H 0.166 0.834
38 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.244 -4.625 17.436 19.439
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.020 4.020
3 N -0.326 5.326
4 C 0.129 3.871
5 C -0.565 4.565
6 H 0.075 0.925
7 C -0.141 4.141
8 N -0.533 5.533
9 Si 0.725 3.275
10 H -0.206 1.206
11 H -0.211 1.211
12 H -0.199 1.199
13 C 0.297 3.703
14 O -0.405 6.405
15 C -0.167 4.167
16 C -0.056 4.056
17 C -0.041 4.041
18 N -0.168 5.168
19 C -0.062 4.062
20 C -0.146 4.146
21 C -0.136 4.136
22 C 0.452 3.548
23 F -0.158 7.158
24 F -0.135 7.135
25 F -0.157 7.157
26 H 0.081 0.919
27 H 0.080 0.920
28 H 0.068 0.932
29 H 0.103 0.897
30 H 0.082 0.918
31 H 0.050 0.950
32 H 0.061 0.939
33 H 0.073 0.927
34 H 0.129 0.871
35 H 0.123 0.877
36 H 0.184 0.816
37 H 0.183 0.817
38 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -6.240 -3.936 17.594 19.078
hybrid contribution -0.187 -0.105 -0.986 1.009
sum -6.427 -4.040 16.608 18.261
Atomic orbital electron populations
1.22230 0.96746 1.01489 1.02392 1.21455 0.93586 0.84183 1.02760
1.48204 1.63600 1.13245 1.07524 1.19276 0.96252 0.93673 0.77909
1.21421 0.96882 1.31925 1.06270 0.92473 1.24932 0.97822 0.94901
0.96426 1.69931 1.35703 1.33375 1.14307 0.86507 0.84708 0.77675
0.78596 1.20636 1.21109 1.19904 1.19803 0.79186 0.86933 0.84415
1.90707 1.45327 1.17605 1.86903 1.21077 1.05048 0.98734 0.91793
1.20214 0.94382 0.95375 0.95617 1.22728 0.93635 0.96537 0.91195
1.67697 1.34527 1.03757 1.10773 1.22780 0.88849 0.95730 0.98860
1.21983 0.99141 0.98384 0.95106 1.20236 0.93614 1.00450 0.99329
1.18199 0.85356 0.73768 0.77498 1.93159 1.78350 1.62847 1.81481
1.93372 1.95855 1.92233 1.32069 1.93170 1.83703 1.43084 1.95785
0.91928 0.92048 0.93183 0.89723 0.91757 0.94977 0.93857 0.92718
0.87090 0.87714 0.81599 0.81663 0.83356
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16
2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16
3 N -0.59 -12.24 2.46 -175.06 -0.43 -12.67 16
4 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16
5 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16
6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16
7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16
8 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16
9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16
10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16
13 C 0.51 10.28 6.24 -10.99 -0.07 10.21 16
14 O -0.53 -12.99 14.82 5.55 0.08 -12.91 16
15 C -0.13 -1.81 3.78 -29.03 -0.11 -1.92 16
16 C -0.05 -0.76 4.36 -104.48 -0.46 -1.22 16
17 C 0.12 1.58 10.84 -17.55 -0.19 1.39 16
18 N -0.46 -6.16 10.36 -13.25 -0.14 -6.30 16
19 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16
20 C -0.13 -1.44 9.50 -39.44 -0.37 -1.82 16
21 C -0.13 -1.76 5.40 -104.32 -0.56 -2.32 16
22 C 0.51 7.17 2.85 36.00 0.10 7.27 16
23 F -0.18 -2.29 16.08 2.25 0.04 -2.25 16
24 F -0.15 -2.73 14.54 2.25 0.03 -2.70 16
25 F -0.18 -2.28 15.45 2.25 0.03 -2.24 16
26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
28 H 0.05 0.65 7.22 -51.93 -0.37 0.28 16
29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16
30 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16
31 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16
32 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16
33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
34 H 0.11 1.26 7.32 -51.93 -0.38 0.88 16
35 H 0.10 1.36 4.96 -51.93 -0.26 1.10 16
36 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16
37 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16
38 H 0.15 1.30 7.27 -52.49 -0.38 0.92 16
LS Contribution 333.48 15.07 5.03 5.03
Total: -1.00 -34.01 333.48 -5.78 -39.78
By element:
Atomic # 1 Polarization: 2.41 SS G_CDS: -4.19 Total: -1.78 kcal
Atomic # 6 Polarization: 7.06 SS G_CDS: -1.95 Total: 5.11 kcal
Atomic # 7 Polarization: -44.99 SS G_CDS: 0.17 Total: -44.82 kcal
Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal
Atomic # 9 Polarization: -7.29 SS G_CDS: 0.10 Total: -7.19 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -34.01 -5.78 -39.78 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000584538512.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.564 kcal
(2) G-P(sol) polarization free energy of solvation -34.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.572 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds