Wall clock time and date at job start Tue Mar 31 2020 11:05:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46493 * 109.47008 * 2 1
4 4 C 1.46500 * 119.99811 * 269.99478 * 3 2 1
5 5 C 1.50698 * 109.47539 * 270.00356 * 4 3 2
6 6 H 1.07994 * 119.99937 * 359.97438 * 5 4 3
7 7 C 1.37884 * 120.00112 * 180.02562 * 5 4 3
8 8 N 1.31509 * 119.99894 * 359.97438 * 7 5 4
9 9 Si 1.86794 * 120.00079 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.47046 * 89.99795 * 9 7 5
11 11 H 1.48490 * 109.47356 * 209.99686 * 9 7 5
12 12 H 1.48500 * 109.47038 * 330.00278 * 9 7 5
13 13 C 1.34778 * 120.00177 * 90.00267 * 3 2 1
14 14 O 1.21284 * 120.00015 * 179.97438 * 13 3 2
15 15 C 1.50699 * 119.99811 * 359.97438 * 13 3 2
16 16 C 1.50703 * 109.47041 * 180.02562 * 15 13 3
17 17 C 1.38220 * 120.41702 * 264.99855 * 16 15 13
18 18 N 1.31860 * 120.76174 * 179.97438 * 17 16 15
19 19 C 1.31880 * 121.72574 * 359.97438 * 18 17 16
20 20 C 1.38185 * 120.76785 * 359.97438 * 19 18 17
21 21 C 1.38625 * 120.41524 * 84.95266 * 16 15 13
22 22 C 1.50699 * 120.79555 * 0.02769 * 21 16 15
23 23 F 1.39901 * 109.46994 * 180.02562 * 22 21 16
24 24 F 1.39899 * 109.46800 * 299.99641 * 22 21 16
25 25 F 1.39896 * 109.47074 * 59.99542 * 22 21 16
26 26 H 1.08999 * 109.47304 * 60.00091 * 1 2 3
27 27 H 1.09007 * 109.47175 * 179.97438 * 1 2 3
28 28 H 1.08995 * 109.46938 * 299.99992 * 1 2 3
29 29 H 1.09004 * 109.46896 * 239.99842 * 2 1 3
30 30 H 1.09006 * 109.46983 * 120.00063 * 2 1 3
31 31 H 1.09002 * 109.47334 * 30.00771 * 4 3 2
32 32 H 1.09003 * 109.46903 * 150.00281 * 4 3 2
33 33 H 0.97001 * 120.00356 * 180.02562 * 8 7 5
34 34 H 1.09002 * 109.47362 * 59.99777 * 15 13 3
35 35 H 1.09005 * 109.47184 * 299.99847 * 15 13 3
36 36 H 1.08001 * 119.62033 * 359.95681 * 17 16 15
37 37 H 1.08003 * 119.62232 * 180.02562 * 19 18 17
38 38 H 1.07995 * 120.42231 * 179.74997 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2626 2.0717 -1.2687
5 6 3.6858 1.8349 -1.7038
6 1 4.3429 1.2308 -1.0958
7 6 4.1495 2.3903 -2.8775
8 7 3.3495 3.1264 -3.6177
9 14 5.9138 2.0974 -3.4164
10 1 5.9777 0.8766 -4.2596
11 1 6.3928 3.2650 -4.1989
12 1 6.7737 1.9174 -2.2191
13 6 2.2430 2.0165 1.1672
14 8 2.6477 3.1599 1.1672
15 6 1.9913 1.3063 2.4723
16 6 2.3173 2.2298 3.6177
17 6 3.5619 2.1884 4.2176
18 7 3.8546 2.9936 5.2200
19 6 2.9815 3.8642 5.6878
20 6 1.7178 3.9635 5.1374
21 6 1.3731 3.1321 4.0823
22 6 0.0050 3.2087 3.4551
23 9 -0.7504 4.1924 4.1025
24 9 0.1308 3.5344 2.1003
25 9 -0.6351 1.9711 3.5797
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 1.8933 -0.5139 -0.8900
30 1 1.8934 -0.5139 0.8900
31 1 1.5817 1.6876 -2.0284
32 1 2.0956 3.1410 -1.1384
33 1 3.6755 3.5169 -4.4436
34 1 2.6212 0.4185 2.5302
35 1 0.9432 1.0125 2.5299
36 1 4.3031 1.4882 3.8615
37 1 3.2574 4.5078 6.5100
38 1 1.0058 4.6757 5.5275
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000584538512.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:42
Heat of formation + Delta-G solvation = -169.951066 kcal
Electronic energy + Delta-G solvation = -27667.765456 eV
Core-core repulsion = 23287.671837 eV
Total energy + Delta-G solvation = -4380.093619 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.114 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-51.35817 -48.86977 -48.77920 -41.66857 -40.41638 -36.97511 -35.22678 -34.78472
-33.52096 -31.62260 -30.13012 -28.56054 -27.53254 -25.12424 -24.30965 -23.94481
-23.13471 -20.09551 -19.76112 -19.63077 -19.55188 -18.62726 -18.00494 -17.49806
-17.30172 -16.55397 -16.36241 -16.22450 -15.87813 -15.68251 -15.52244 -15.22933
-15.04535 -14.93769 -14.88916 -14.66825 -14.49733 -14.39699 -14.27117 -13.67126
-13.43213 -13.29225 -13.19548 -12.93743 -12.80406 -12.68947 -12.46787 -12.16434
-11.86500 -11.70577 -11.27058 -10.77548 -10.67994 -10.63541 -10.09514 -9.42862
-8.21599 -6.36396 -0.32436 -0.07233 1.36592 1.39696 1.43917 1.49763
1.83022 2.24902 2.40477 2.47959 2.61300 2.81533 3.08158 3.24143
3.28597 3.53096 3.61812 3.74587 3.84665 4.12911 4.18245 4.21870
4.42403 4.48186 4.59027 4.60673 4.70095 4.88876 4.94524 4.98076
5.05441 5.23620 5.37727 5.46111 5.58872 5.86165 6.07152 6.70576
6.75762 6.80039 7.29031 7.48288 8.85599
Molecular weight = 316.11amu
Principal moments of inertia in cm(-1)
A = 0.015620 B = 0.004611 C = 0.004105
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1792.177537 B = 6070.632920 C = 6818.484570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.096 3.904
3 N -0.602 5.602
4 C 0.265 3.735
5 C -0.539 4.539
6 H 0.057 0.943
7 C 0.006 3.994
8 N -0.931 5.931
9 Si 0.968 3.032
10 H -0.263 1.263
11 H -0.284 1.284
12 H -0.271 1.271
13 C 0.505 3.495
14 O -0.583 6.583
15 C -0.111 4.111
16 C -0.075 4.075
17 C 0.107 3.893
18 N -0.478 5.478
19 C 0.100 3.900
20 C -0.124 4.124
21 C -0.142 4.142
22 C 0.506 3.494
23 F -0.170 7.170
24 F -0.181 7.181
25 F -0.168 7.168
26 H 0.037 0.963
27 H 0.098 0.902
28 H 0.052 0.948
29 H 0.076 0.924
30 H 0.106 0.894
31 H 0.019 0.981
32 H -0.007 1.007
33 H 0.266 0.734
34 H 0.146 0.854
35 H 0.120 0.880
36 H 0.180 0.820
37 H 0.204 0.796
38 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.637 -6.141 19.415 21.417
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.026 4.026
3 N -0.333 5.333
4 C 0.144 3.856
5 C -0.578 4.578
6 H 0.075 0.925
7 C -0.193 4.193
8 N -0.570 5.570
9 Si 0.792 3.208
10 H -0.187 1.187
11 H -0.209 1.209
12 H -0.196 1.196
13 C 0.293 3.707
14 O -0.463 6.463
15 C -0.151 4.151
16 C -0.077 4.077
17 C -0.049 4.049
18 N -0.186 5.186
19 C -0.057 4.057
20 C -0.143 4.143
21 C -0.152 4.152
22 C 0.452 3.548
23 F -0.151 7.151
24 F -0.162 7.162
25 F -0.150 7.150
26 H 0.056 0.944
27 H 0.117 0.883
28 H 0.071 0.929
29 H 0.095 0.905
30 H 0.124 0.876
31 H 0.037 0.963
32 H 0.011 0.989
33 H 0.075 0.925
34 H 0.164 0.836
35 H 0.138 0.862
36 H 0.197 0.803
37 H 0.221 0.779
38 H 0.193 0.807
Dipole moment (debyes) X Y Z Total
from point charges -5.659 -5.510 19.591 21.123
hybrid contribution -0.448 0.426 -1.527 1.647
sum -6.107 -5.084 18.065 19.735
Atomic orbital electron populations
1.22171 0.95068 1.03547 1.01323 1.21806 0.94978 0.81384 1.04396
1.48220 1.63882 1.15131 1.06069 1.18662 0.95310 0.91341 0.80310
1.21714 0.97756 1.31848 1.06454 0.92493 1.25874 1.02376 0.94490
0.96516 1.70063 1.37852 1.34327 1.14802 0.85412 0.79013 0.78113
0.78261 1.18744 1.20937 1.19574 1.20752 0.77591 0.86489 0.85864
1.90667 1.47626 1.20166 1.87868 1.20998 1.06713 0.99206 0.88137
1.20259 0.95074 0.96303 0.96106 1.22988 0.93609 0.96987 0.91335
1.67759 1.35345 1.04457 1.11064 1.23456 0.88200 0.94988 0.99017
1.22352 0.99891 0.97943 0.94138 1.20423 0.93291 1.01242 1.00239
1.18296 0.86024 0.74101 0.76394 1.93165 1.78226 1.62638 1.81105
1.93327 1.96040 1.92529 1.34298 1.93174 1.83625 1.42529 1.95635
0.94424 0.88325 0.92853 0.90544 0.87608 0.96280 0.98884 0.92509
0.83603 0.86191 0.80281 0.77887 0.80749
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.11 10.24 71.98 0.74 -3.37 16
2 C 0.10 2.85 5.93 86.38 0.51 3.36 16
3 N -0.60 -25.22 2.46 -826.15 -2.03 -27.25 16
4 C 0.27 14.44 5.16 85.63 0.44 14.88 16
5 C -0.54 -31.02 9.39 25.60 0.24 -30.78 16
6 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16
7 C 0.01 0.36 5.46 84.66 0.46 0.82 16
8 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16
9 Si 0.97 45.02 29.54 68.60 2.03 47.05 16
10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16
11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16
12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16
13 C 0.50 20.47 6.24 87.66 0.55 21.01 16
14 O -0.58 -29.73 14.82 -3.04 -0.05 -29.78 16
15 C -0.11 -3.00 3.78 29.10 0.11 -2.89 16
16 C -0.07 -2.05 4.36 -19.78 -0.09 -2.13 16
17 C 0.11 2.75 10.84 84.68 0.92 3.67 16
18 N -0.48 -11.88 10.36 -195.84 -2.03 -13.91 16
19 C 0.10 1.95 11.18 84.67 0.95 2.90 16
20 C -0.12 -2.55 9.50 22.36 0.21 -2.34 16
21 C -0.14 -3.77 5.40 -19.67 -0.11 -3.87 16
22 C 0.51 13.97 2.85 71.24 0.20 14.18 16
23 F -0.17 -4.20 16.08 44.97 0.72 -3.48 16
24 F -0.18 -6.54 14.54 44.97 0.65 -5.89 16
25 F -0.17 -4.11 15.45 44.97 0.69 -3.42 16
26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16
27 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16
28 H 0.05 1.30 7.22 -2.39 -0.02 1.29 16
29 H 0.08 2.38 8.07 -2.38 -0.02 2.37 16
30 H 0.11 2.25 6.44 -2.38 -0.02 2.23 16
31 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16
32 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16
33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16
34 H 0.15 2.85 7.32 -2.39 -0.02 2.83 16
35 H 0.12 2.86 4.96 -2.38 -0.01 2.84 16
36 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16
37 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16
38 H 0.18 2.55 7.27 -2.91 -0.02 2.53 16
Total: -1.00 -77.93 333.48 6.52 -71.41
By element:
Atomic # 1 Polarization: 5.44 SS G_CDS: 1.10 Total: 6.54 kcal
Atomic # 6 Polarization: 10.31 SS G_CDS: 5.14 Total: 15.44 kcal
Atomic # 7 Polarization: -94.10 SS G_CDS: -3.77 Total: -97.87 kcal
Atomic # 8 Polarization: -29.73 SS G_CDS: -0.05 Total: -29.78 kcal
Atomic # 9 Polarization: -14.86 SS G_CDS: 2.07 Total: -12.79 kcal
Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal
Total: -77.93 6.52 -71.41 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000584538512.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -98.539 kcal
(2) G-P(sol) polarization free energy of solvation -77.933 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.521 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.412 kcal
(6) G-S(sol) free energy of system = (1) + (5) -169.951 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds