Wall clock time and date at job start Tue Mar 31 2020 11:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47008 * 2 1 4 4 C 1.46500 * 119.99811 * 269.99478 * 3 2 1 5 5 C 1.50698 * 109.47539 * 270.00356 * 4 3 2 6 6 H 1.07994 * 119.99937 * 359.97438 * 5 4 3 7 7 C 1.37884 * 120.00112 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99894 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00079 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47046 * 89.99795 * 9 7 5 11 11 H 1.48490 * 109.47356 * 209.99686 * 9 7 5 12 12 H 1.48500 * 109.47038 * 330.00278 * 9 7 5 13 13 C 1.34778 * 120.00177 * 90.00267 * 3 2 1 14 14 O 1.21284 * 120.00015 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99811 * 359.97438 * 13 3 2 16 16 C 1.50703 * 109.47041 * 180.02562 * 15 13 3 17 17 C 1.38220 * 120.41702 * 264.99855 * 16 15 13 18 18 N 1.31860 * 120.76174 * 179.97438 * 17 16 15 19 19 C 1.31880 * 121.72574 * 359.97438 * 18 17 16 20 20 C 1.38185 * 120.76785 * 359.97438 * 19 18 17 21 21 C 1.38625 * 120.41524 * 84.95266 * 16 15 13 22 22 C 1.50699 * 120.79555 * 0.02769 * 21 16 15 23 23 F 1.39901 * 109.46994 * 180.02562 * 22 21 16 24 24 F 1.39899 * 109.46800 * 299.99641 * 22 21 16 25 25 F 1.39896 * 109.47074 * 59.99542 * 22 21 16 26 26 H 1.08999 * 109.47304 * 60.00091 * 1 2 3 27 27 H 1.09007 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46938 * 299.99992 * 1 2 3 29 29 H 1.09004 * 109.46896 * 239.99842 * 2 1 3 30 30 H 1.09006 * 109.46983 * 120.00063 * 2 1 3 31 31 H 1.09002 * 109.47334 * 30.00771 * 4 3 2 32 32 H 1.09003 * 109.46903 * 150.00281 * 4 3 2 33 33 H 0.97001 * 120.00356 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47362 * 59.99777 * 15 13 3 35 35 H 1.09005 * 109.47184 * 299.99847 * 15 13 3 36 36 H 1.08001 * 119.62033 * 359.95681 * 17 16 15 37 37 H 1.08003 * 119.62232 * 180.02562 * 19 18 17 38 38 H 1.07995 * 120.42231 * 179.74997 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1264 -3.6177 9 14 5.9138 2.0974 -3.4164 10 1 5.9777 0.8766 -4.2596 11 1 6.3928 3.2650 -4.1989 12 1 6.7737 1.9174 -2.2191 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9913 1.3063 2.4723 16 6 2.3173 2.2298 3.6177 17 6 3.5619 2.1884 4.2176 18 7 3.8546 2.9936 5.2200 19 6 2.9815 3.8642 5.6878 20 6 1.7178 3.9635 5.1374 21 6 1.3731 3.1321 4.0823 22 6 0.0050 3.2087 3.4551 23 9 -0.7504 4.1924 4.1025 24 9 0.1308 3.5344 2.1003 25 9 -0.6351 1.9711 3.5797 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5817 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.6755 3.5169 -4.4436 34 1 2.6212 0.4185 2.5302 35 1 0.9432 1.0125 2.5299 36 1 4.3031 1.4882 3.8615 37 1 3.2574 4.5078 6.5100 38 1 1.0058 4.6757 5.5275 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584538512.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:42 Heat of formation + Delta-G solvation = -169.951066 kcal Electronic energy + Delta-G solvation = -27667.765456 eV Core-core repulsion = 23287.671837 eV Total energy + Delta-G solvation = -4380.093619 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.35817 -48.86977 -48.77920 -41.66857 -40.41638 -36.97511 -35.22678 -34.78472 -33.52096 -31.62260 -30.13012 -28.56054 -27.53254 -25.12424 -24.30965 -23.94481 -23.13471 -20.09551 -19.76112 -19.63077 -19.55188 -18.62726 -18.00494 -17.49806 -17.30172 -16.55397 -16.36241 -16.22450 -15.87813 -15.68251 -15.52244 -15.22933 -15.04535 -14.93769 -14.88916 -14.66825 -14.49733 -14.39699 -14.27117 -13.67126 -13.43213 -13.29225 -13.19548 -12.93743 -12.80406 -12.68947 -12.46787 -12.16434 -11.86500 -11.70577 -11.27058 -10.77548 -10.67994 -10.63541 -10.09514 -9.42862 -8.21599 -6.36396 -0.32436 -0.07233 1.36592 1.39696 1.43917 1.49763 1.83022 2.24902 2.40477 2.47959 2.61300 2.81533 3.08158 3.24143 3.28597 3.53096 3.61812 3.74587 3.84665 4.12911 4.18245 4.21870 4.42403 4.48186 4.59027 4.60673 4.70095 4.88876 4.94524 4.98076 5.05441 5.23620 5.37727 5.46111 5.58872 5.86165 6.07152 6.70576 6.75762 6.80039 7.29031 7.48288 8.85599 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.004611 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.177537 B = 6070.632920 C = 6818.484570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.602 5.602 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.505 3.495 14 O -0.583 6.583 15 C -0.111 4.111 16 C -0.075 4.075 17 C 0.107 3.893 18 N -0.478 5.478 19 C 0.100 3.900 20 C -0.124 4.124 21 C -0.142 4.142 22 C 0.506 3.494 23 F -0.170 7.170 24 F -0.181 7.181 25 F -0.168 7.168 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.019 0.981 32 H -0.007 1.007 33 H 0.266 0.734 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.180 0.820 37 H 0.204 0.796 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.637 -6.141 19.415 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.333 5.333 4 C 0.144 3.856 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.293 3.707 14 O -0.463 6.463 15 C -0.151 4.151 16 C -0.077 4.077 17 C -0.049 4.049 18 N -0.186 5.186 19 C -0.057 4.057 20 C -0.143 4.143 21 C -0.152 4.152 22 C 0.452 3.548 23 F -0.151 7.151 24 F -0.162 7.162 25 F -0.150 7.150 26 H 0.056 0.944 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.037 0.963 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.164 0.836 35 H 0.138 0.862 36 H 0.197 0.803 37 H 0.221 0.779 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.659 -5.510 19.591 21.123 hybrid contribution -0.448 0.426 -1.527 1.647 sum -6.107 -5.084 18.065 19.735 Atomic orbital electron populations 1.22171 0.95068 1.03547 1.01323 1.21806 0.94978 0.81384 1.04396 1.48220 1.63882 1.15131 1.06069 1.18662 0.95310 0.91341 0.80310 1.21714 0.97756 1.31848 1.06454 0.92493 1.25874 1.02376 0.94490 0.96516 1.70063 1.37852 1.34327 1.14802 0.85412 0.79013 0.78113 0.78261 1.18744 1.20937 1.19574 1.20752 0.77591 0.86489 0.85864 1.90667 1.47626 1.20166 1.87868 1.20998 1.06713 0.99206 0.88137 1.20259 0.95074 0.96303 0.96106 1.22988 0.93609 0.96987 0.91335 1.67759 1.35345 1.04457 1.11064 1.23456 0.88200 0.94988 0.99017 1.22352 0.99891 0.97943 0.94138 1.20423 0.93291 1.01242 1.00239 1.18296 0.86024 0.74101 0.76394 1.93165 1.78226 1.62638 1.81105 1.93327 1.96040 1.92529 1.34298 1.93174 1.83625 1.42529 1.95635 0.94424 0.88325 0.92853 0.90544 0.87608 0.96280 0.98884 0.92509 0.83603 0.86191 0.80281 0.77887 0.80749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 10.24 71.98 0.74 -3.37 16 2 C 0.10 2.85 5.93 86.38 0.51 3.36 16 3 N -0.60 -25.22 2.46 -826.15 -2.03 -27.25 16 4 C 0.27 14.44 5.16 85.63 0.44 14.88 16 5 C -0.54 -31.02 9.39 25.60 0.24 -30.78 16 6 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 9 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 13 C 0.50 20.47 6.24 87.66 0.55 21.01 16 14 O -0.58 -29.73 14.82 -3.04 -0.05 -29.78 16 15 C -0.11 -3.00 3.78 29.10 0.11 -2.89 16 16 C -0.07 -2.05 4.36 -19.78 -0.09 -2.13 16 17 C 0.11 2.75 10.84 84.68 0.92 3.67 16 18 N -0.48 -11.88 10.36 -195.84 -2.03 -13.91 16 19 C 0.10 1.95 11.18 84.67 0.95 2.90 16 20 C -0.12 -2.55 9.50 22.36 0.21 -2.34 16 21 C -0.14 -3.77 5.40 -19.67 -0.11 -3.87 16 22 C 0.51 13.97 2.85 71.24 0.20 14.18 16 23 F -0.17 -4.20 16.08 44.97 0.72 -3.48 16 24 F -0.18 -6.54 14.54 44.97 0.65 -5.89 16 25 F -0.17 -4.11 15.45 44.97 0.69 -3.42 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.05 1.30 7.22 -2.39 -0.02 1.29 16 29 H 0.08 2.38 8.07 -2.38 -0.02 2.37 16 30 H 0.11 2.25 6.44 -2.38 -0.02 2.23 16 31 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 32 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.15 2.85 7.32 -2.39 -0.02 2.83 16 35 H 0.12 2.86 4.96 -2.38 -0.01 2.84 16 36 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 37 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.18 2.55 7.27 -2.91 -0.02 2.53 16 Total: -1.00 -77.93 333.48 6.52 -71.41 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.10 Total: 6.54 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 5.14 Total: 15.44 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.77 Total: -97.87 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.05 Total: -29.78 kcal Atomic # 9 Polarization: -14.86 SS G_CDS: 2.07 Total: -12.79 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -77.93 6.52 -71.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584538512.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.539 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds