Wall clock time and date at job start Tue Mar 31 2020 11:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36566 * 127.17188 * 2 1 4 4 S 1.76205 * 126.38583 * 359.97438 * 3 2 1 5 5 C 1.80997 * 100.00337 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.46938 * 179.97438 * 5 4 3 7 7 C 1.50701 * 115.54996 * 41.05526 * 6 5 4 8 8 H 1.07997 * 120.00223 * 265.13279 * 7 6 5 9 9 C 1.37875 * 119.99907 * 85.13742 * 7 6 5 10 10 N 1.31518 * 120.00415 * 4.55303 * 9 7 6 11 11 Si 1.86800 * 120.00112 * 184.55004 * 9 7 6 12 12 H 1.48505 * 109.47086 * 59.99679 * 11 9 7 13 13 H 1.48499 * 109.47566 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47051 * 300.00296 * 11 9 7 15 15 C 1.53000 * 117.50262 * 255.33968 * 6 5 4 16 16 C 1.52995 * 60.00469 * 252.51595 * 15 6 5 17 17 N 1.31440 * 107.23583 * 179.97438 * 3 2 1 18 18 N 1.28509 * 110.07708 * 359.76578 * 17 3 2 19 19 C 1.31260 * 109.96206 * 0.39176 * 18 17 3 20 20 C 1.47841 * 126.46752 * 179.88536 * 19 18 17 21 21 C 1.39999 * 120.56162 * 162.00811 * 20 19 18 22 22 C 1.38361 * 118.29197 * 180.29363 * 21 20 19 23 23 C 1.38353 * 119.30316 * 359.46109 * 22 21 20 24 24 N 1.31909 * 121.08208 * 0.55663 * 23 22 21 25 25 C 1.31702 * 121.87469 * 359.71387 * 24 23 22 26 26 H 1.09001 * 109.47220 * 263.76687 * 1 2 3 27 27 H 1.09001 * 109.47256 * 23.77253 * 1 2 3 28 28 H 1.09003 * 109.46845 * 143.76525 * 1 2 3 29 29 H 1.08996 * 109.47357 * 300.00084 * 5 4 3 30 30 H 1.09000 * 109.46777 * 60.00212 * 5 4 3 31 31 H 0.96999 * 120.00568 * 185.01048 * 10 9 7 32 32 H 1.08995 * 117.49759 * 0.02562 * 15 6 5 33 33 H 1.09006 * 117.49717 * 145.02206 * 15 6 5 34 34 H 1.09007 * 117.49842 * 252.51113 * 16 15 6 35 35 H 1.08997 * 117.52061 * 107.48158 * 16 15 6 36 36 H 1.07997 * 120.85932 * 0.02562 * 21 20 19 37 37 H 1.08002 * 120.34468 * 179.70360 * 22 21 20 38 38 H 1.08004 * 119.45499 * 180.27445 * 23 22 21 39 39 H 1.08001 * 119.71527 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2901 1.0882 0.0000 4 16 1.7914 2.7782 -0.0006 5 6 3.4120 3.5842 0.0005 6 6 3.2261 5.1029 -0.0005 7 6 2.1286 5.6240 0.8911 8 1 1.1455 5.8102 0.4849 9 6 2.3797 5.8631 2.2256 10 7 3.5978 5.7224 2.7011 11 14 0.9898 6.3871 3.3583 12 1 -0.0594 5.3363 3.3733 13 1 1.5174 6.5803 4.7328 14 1 0.4064 7.6620 2.8688 15 6 3.4825 5.8452 -1.3136 16 6 4.4784 5.9677 -0.1586 17 7 3.5258 0.6400 0.0006 18 7 3.5289 -0.6450 0.0058 19 6 2.2963 -1.0962 0.0005 20 6 1.8798 -2.5148 0.0016 21 6 0.5773 -2.8739 0.3681 22 6 0.2397 -4.2157 0.3583 23 6 1.1875 -5.1497 -0.0205 24 7 2.4077 -4.7821 -0.3610 25 6 2.7784 -3.5183 -0.3624 26 1 -0.3634 -0.1116 1.0216 27 1 -0.3634 0.9405 -0.4143 28 1 -0.3633 -0.8290 -0.6075 29 1 3.9654 3.2861 0.8909 30 1 3.9667 3.2859 -0.8890 31 1 3.7615 5.8194 3.6523 32 1 3.7832 5.2515 -2.1768 33 1 2.8571 6.7106 -1.5329 34 1 4.5083 6.9138 0.3820 35 1 5.4346 5.4547 -0.2615 36 1 -0.1443 -2.1234 0.6553 37 1 -0.7545 -4.5302 0.6397 38 1 0.9252 -6.1973 -0.0333 39 1 3.7868 -3.2565 -0.6470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594882749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:09 Heat of formation + Delta-G solvation = 140.336608 kcal Electronic energy + Delta-G solvation = -22821.587421 eV Core-core repulsion = 19471.851248 eV Total energy + Delta-G solvation = -3349.736173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.62812 -40.21583 -36.67489 -35.16128 -33.22091 -32.24357 -32.05096 -29.51758 -27.84007 -27.70863 -25.46601 -24.29349 -23.99191 -22.17487 -21.17388 -21.14529 -19.34018 -17.81552 -17.35313 -16.66232 -16.39812 -16.26440 -15.77786 -15.45353 -14.70729 -14.24526 -14.17462 -13.92791 -13.80178 -13.61385 -13.55334 -13.01683 -12.74642 -12.29645 -12.22848 -11.62710 -11.48079 -11.06461 -10.96820 -10.74612 -10.61180 -10.53369 -10.24073 -10.17874 -9.98186 -9.95327 -9.81338 -9.59534 -9.07669 -8.91620 -8.50337 -8.12514 -6.97918 -6.14935 -4.23711 0.42092 0.88735 1.59591 1.96340 2.64003 2.96436 3.01293 3.24723 3.30424 3.31943 3.57455 3.91965 4.26985 4.31770 4.37753 4.47624 4.51296 4.66679 4.87406 5.02951 5.14743 5.17579 5.23614 5.28001 5.46955 5.61782 5.65821 5.91863 5.96239 6.06589 6.11975 6.29966 6.39243 6.44933 6.68715 6.72125 6.77021 7.04451 7.24230 7.48044 7.62946 7.75022 8.24094 8.77414 8.77573 9.43261 10.92801 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.003230 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.272948 B = 8667.864263 C = 9321.775925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.467 5.467 3 C 0.169 3.831 4 S 0.039 5.961 5 C -0.045 4.045 6 C 0.044 3.956 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.080 3.920 10 N -0.869 5.869 11 Si 0.887 3.113 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.275 1.275 15 C -0.208 4.208 16 C -0.138 4.138 17 N -0.298 5.298 18 N -0.262 5.262 19 C 0.191 3.809 20 C -0.049 4.049 21 C -0.076 4.076 22 C -0.167 4.167 23 C 0.101 3.899 24 N -0.479 5.479 25 C 0.140 3.860 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.159 0.841 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.221 -15.891 -4.985 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.161 5.161 3 C -0.203 4.203 4 S 0.272 5.728 5 C -0.194 4.194 6 C 0.041 3.959 7 C -0.538 4.538 8 H 0.082 0.918 9 C -0.125 4.125 10 N -0.504 5.504 11 Si 0.714 3.286 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.201 1.201 15 C -0.245 4.245 16 C -0.178 4.178 17 N -0.143 5.143 18 N -0.103 5.103 19 C -0.075 4.075 20 C -0.054 4.054 21 C -0.104 4.104 22 C -0.187 4.187 23 C -0.057 4.057 24 N -0.186 5.186 25 C -0.019 4.019 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.176 0.824 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.078 -15.949 -5.063 18.581 hybrid contribution -1.487 0.380 1.111 1.895 sum -9.565 -15.569 -3.951 18.694 Atomic orbital electron populations 1.22300 0.75545 1.05606 1.04010 1.46262 1.08281 1.04851 1.56738 1.28214 0.89599 0.98204 1.04234 1.86032 1.14807 0.81893 1.90083 1.23326 0.92391 0.99273 1.04404 1.18516 0.97362 0.85671 0.94324 1.20309 0.95372 1.44840 0.93318 0.91824 1.24954 0.95201 0.94180 0.98159 1.69987 1.19117 1.47577 1.13705 0.86732 0.82603 0.79344 0.79922 1.19841 1.21182 1.20080 1.23107 1.05454 1.03762 0.92210 1.22544 0.92713 1.02480 1.00037 1.74780 1.15879 1.02097 1.21561 1.74198 1.16291 1.03841 1.16003 1.22489 0.87257 0.88370 1.09429 1.18503 0.95221 0.88561 1.03078 1.21898 0.95144 0.97259 0.96117 1.22056 1.01628 0.93118 1.01918 1.22941 0.88588 1.00419 0.93743 1.67790 1.18374 1.18648 1.13823 1.22987 0.99675 0.86469 0.92783 0.89641 0.88098 0.89106 0.88949 0.91441 0.92653 0.91444 0.90146 0.89304 0.91648 0.84284 0.84158 0.82356 0.81358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 9.34 59.85 0.56 1.23 16 2 N -0.47 -7.10 3.24 -121.46 -0.39 -7.49 16 3 C 0.17 3.18 8.07 -88.18 -0.71 2.47 16 4 S 0.04 0.76 20.56 -107.50 -2.21 -1.45 16 5 C -0.04 -0.98 5.33 37.15 0.20 -0.78 16 6 C 0.04 1.01 1.72 -155.66 -0.27 0.74 16 7 C -0.50 -12.60 7.59 -34.44 -0.26 -12.86 16 8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 9 C 0.08 2.08 5.43 -17.82 -0.10 1.99 16 10 N -0.87 -23.54 12.65 55.43 0.70 -22.84 16 11 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 15 C -0.21 -4.32 9.88 -26.73 -0.26 -4.59 16 16 C -0.14 -3.12 9.16 -26.73 -0.24 -3.36 16 17 N -0.30 -6.20 11.59 30.71 0.36 -5.85 16 18 N -0.26 -5.00 12.02 32.59 0.39 -4.61 16 19 C 0.19 3.01 7.72 -153.76 -1.19 1.83 16 20 C -0.05 -0.60 5.88 -104.82 -0.62 -1.22 16 21 C -0.08 -0.70 8.88 -38.88 -0.35 -1.05 16 22 C -0.17 -1.22 10.10 -39.49 -0.40 -1.62 16 23 C 0.10 0.84 11.17 -17.48 -0.20 0.65 16 24 N -0.48 -5.45 10.35 -12.91 -0.13 -5.58 16 25 C 0.14 1.72 10.87 -17.12 -0.19 1.53 16 26 H 0.09 0.70 7.80 -51.93 -0.40 0.29 16 27 H 0.10 0.97 7.67 -51.93 -0.40 0.57 16 28 H 0.09 0.65 6.52 -51.93 -0.34 0.31 16 29 H 0.09 2.25 8.14 -51.92 -0.42 1.83 16 30 H 0.07 1.41 7.96 -51.92 -0.41 0.99 16 31 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 32 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 33 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 35 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.14 1.00 5.03 -52.49 -0.26 0.74 16 37 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.17 2.05 7.98 -52.49 -0.42 1.63 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -30.84 348.27 -9.82 -40.67 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.74 Total: 1.87 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -4.02 Total: -15.05 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.92 Total: -46.37 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.21 Total: -1.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.84 -9.82 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594882749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.002 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds