Wall clock time and date at job start Tue Mar 31 2020 11:36:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.36566 * 127.17188 * 2 1
4 4 S 1.76205 * 126.38583 * 359.97438 * 3 2 1
5 5 C 1.80997 * 100.00337 * 179.97438 * 4 3 2
6 6 C 1.52993 * 109.46938 * 179.97438 * 5 4 3
7 7 C 1.50701 * 115.54996 * 41.05526 * 6 5 4
8 8 H 1.07997 * 120.00223 * 265.13279 * 7 6 5
9 9 C 1.37875 * 119.99907 * 85.13742 * 7 6 5
10 10 N 1.31518 * 120.00415 * 4.55303 * 9 7 6
11 11 Si 1.86800 * 120.00112 * 184.55004 * 9 7 6
12 12 H 1.48505 * 109.47086 * 59.99679 * 11 9 7
13 13 H 1.48499 * 109.47566 * 180.02562 * 11 9 7
14 14 H 1.48502 * 109.47051 * 300.00296 * 11 9 7
15 15 C 1.53000 * 117.50262 * 255.33968 * 6 5 4
16 16 C 1.52995 * 60.00469 * 252.51595 * 15 6 5
17 17 N 1.31440 * 107.23583 * 179.97438 * 3 2 1
18 18 N 1.28509 * 110.07708 * 359.76578 * 17 3 2
19 19 C 1.31260 * 109.96206 * 0.39176 * 18 17 3
20 20 C 1.47841 * 126.46752 * 179.88536 * 19 18 17
21 21 C 1.39999 * 120.56162 * 162.00811 * 20 19 18
22 22 C 1.38361 * 118.29197 * 180.29363 * 21 20 19
23 23 C 1.38353 * 119.30316 * 359.46109 * 22 21 20
24 24 N 1.31909 * 121.08208 * 0.55663 * 23 22 21
25 25 C 1.31702 * 121.87469 * 359.71387 * 24 23 22
26 26 H 1.09001 * 109.47220 * 263.76687 * 1 2 3
27 27 H 1.09001 * 109.47256 * 23.77253 * 1 2 3
28 28 H 1.09003 * 109.46845 * 143.76525 * 1 2 3
29 29 H 1.08996 * 109.47357 * 300.00084 * 5 4 3
30 30 H 1.09000 * 109.46777 * 60.00212 * 5 4 3
31 31 H 0.96999 * 120.00568 * 185.01048 * 10 9 7
32 32 H 1.08995 * 117.49759 * 0.02562 * 15 6 5
33 33 H 1.09006 * 117.49717 * 145.02206 * 15 6 5
34 34 H 1.09007 * 117.49842 * 252.51113 * 16 15 6
35 35 H 1.08997 * 117.52061 * 107.48158 * 16 15 6
36 36 H 1.07997 * 120.85932 * 0.02562 * 21 20 19
37 37 H 1.08002 * 120.34468 * 179.70360 * 22 21 20
38 38 H 1.08004 * 119.45499 * 180.27445 * 23 22 21
39 39 H 1.08001 * 119.71527 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2901 1.0882 0.0000
4 16 1.7914 2.7782 -0.0006
5 6 3.4120 3.5842 0.0005
6 6 3.2261 5.1029 -0.0005
7 6 2.1286 5.6240 0.8911
8 1 1.1455 5.8102 0.4849
9 6 2.3797 5.8631 2.2256
10 7 3.5978 5.7224 2.7011
11 14 0.9898 6.3871 3.3583
12 1 -0.0594 5.3363 3.3733
13 1 1.5174 6.5803 4.7328
14 1 0.4064 7.6620 2.8688
15 6 3.4825 5.8452 -1.3136
16 6 4.4784 5.9677 -0.1586
17 7 3.5258 0.6400 0.0006
18 7 3.5289 -0.6450 0.0058
19 6 2.2963 -1.0962 0.0005
20 6 1.8798 -2.5148 0.0016
21 6 0.5773 -2.8739 0.3681
22 6 0.2397 -4.2157 0.3583
23 6 1.1875 -5.1497 -0.0205
24 7 2.4077 -4.7821 -0.3610
25 6 2.7784 -3.5183 -0.3624
26 1 -0.3634 -0.1116 1.0216
27 1 -0.3634 0.9405 -0.4143
28 1 -0.3633 -0.8290 -0.6075
29 1 3.9654 3.2861 0.8909
30 1 3.9667 3.2859 -0.8890
31 1 3.7615 5.8194 3.6523
32 1 3.7832 5.2515 -2.1768
33 1 2.8571 6.7106 -1.5329
34 1 4.5083 6.9138 0.3820
35 1 5.4346 5.4547 -0.2615
36 1 -0.1443 -2.1234 0.6553
37 1 -0.7545 -4.5302 0.6397
38 1 0.9252 -6.1973 -0.0333
39 1 3.7868 -3.2565 -0.6470
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000594882749.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:36:09
Heat of formation + Delta-G solvation = 140.336608 kcal
Electronic energy + Delta-G solvation = -22821.587421 eV
Core-core repulsion = 19471.851248 eV
Total energy + Delta-G solvation = -3349.736173 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.105 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-42.62812 -40.21583 -36.67489 -35.16128 -33.22091 -32.24357 -32.05096 -29.51758
-27.84007 -27.70863 -25.46601 -24.29349 -23.99191 -22.17487 -21.17388 -21.14529
-19.34018 -17.81552 -17.35313 -16.66232 -16.39812 -16.26440 -15.77786 -15.45353
-14.70729 -14.24526 -14.17462 -13.92791 -13.80178 -13.61385 -13.55334 -13.01683
-12.74642 -12.29645 -12.22848 -11.62710 -11.48079 -11.06461 -10.96820 -10.74612
-10.61180 -10.53369 -10.24073 -10.17874 -9.98186 -9.95327 -9.81338 -9.59534
-9.07669 -8.91620 -8.50337 -8.12514 -6.97918 -6.14935 -4.23711 0.42092
0.88735 1.59591 1.96340 2.64003 2.96436 3.01293 3.24723 3.30424
3.31943 3.57455 3.91965 4.26985 4.31770 4.37753 4.47624 4.51296
4.66679 4.87406 5.02951 5.14743 5.17579 5.23614 5.28001 5.46955
5.61782 5.65821 5.91863 5.96239 6.06589 6.11975 6.29966 6.39243
6.44933 6.68715 6.72125 6.77021 7.04451 7.24230 7.48044 7.62946
7.75022 8.24094 8.77414 8.77573 9.43261 10.92801
Molecular weight = 316.11amu
Principal moments of inertia in cm(-1)
A = 0.021203 B = 0.003230 C = 0.003003
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1320.272948 B = 8667.864263 C = 9321.775925
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.068 3.932
2 N -0.467 5.467
3 C 0.169 3.831
4 S 0.039 5.961
5 C -0.045 4.045
6 C 0.044 3.956
7 C -0.499 4.499
8 H 0.064 0.936
9 C 0.080 3.920
10 N -0.869 5.869
11 Si 0.887 3.113
12 H -0.273 1.273
13 H -0.286 1.286
14 H -0.275 1.275
15 C -0.208 4.208
16 C -0.138 4.138
17 N -0.298 5.298
18 N -0.262 5.262
19 C 0.191 3.809
20 C -0.049 4.049
21 C -0.076 4.076
22 C -0.167 4.167
23 C 0.101 3.899
24 N -0.479 5.479
25 C 0.140 3.860
26 H 0.085 0.915
27 H 0.100 0.900
28 H 0.090 0.910
29 H 0.092 0.908
30 H 0.067 0.933
31 H 0.264 0.736
32 H 0.067 0.933
33 H 0.080 0.920
34 H 0.088 0.912
35 H 0.065 0.935
36 H 0.140 0.860
37 H 0.141 0.859
38 H 0.159 0.841
39 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.221 -15.891 -4.985 19.036
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 N -0.161 5.161
3 C -0.203 4.203
4 S 0.272 5.728
5 C -0.194 4.194
6 C 0.041 3.959
7 C -0.538 4.538
8 H 0.082 0.918
9 C -0.125 4.125
10 N -0.504 5.504
11 Si 0.714 3.286
12 H -0.198 1.198
13 H -0.212 1.212
14 H -0.201 1.201
15 C -0.245 4.245
16 C -0.178 4.178
17 N -0.143 5.143
18 N -0.103 5.103
19 C -0.075 4.075
20 C -0.054 4.054
21 C -0.104 4.104
22 C -0.187 4.187
23 C -0.057 4.057
24 N -0.186 5.186
25 C -0.019 4.019
26 H 0.104 0.896
27 H 0.119 0.881
28 H 0.109 0.891
29 H 0.111 0.889
30 H 0.086 0.914
31 H 0.073 0.927
32 H 0.086 0.914
33 H 0.099 0.901
34 H 0.107 0.893
35 H 0.084 0.916
36 H 0.157 0.843
37 H 0.158 0.842
38 H 0.176 0.824
39 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges -8.078 -15.949 -5.063 18.581
hybrid contribution -1.487 0.380 1.111 1.895
sum -9.565 -15.569 -3.951 18.694
Atomic orbital electron populations
1.22300 0.75545 1.05606 1.04010 1.46262 1.08281 1.04851 1.56738
1.28214 0.89599 0.98204 1.04234 1.86032 1.14807 0.81893 1.90083
1.23326 0.92391 0.99273 1.04404 1.18516 0.97362 0.85671 0.94324
1.20309 0.95372 1.44840 0.93318 0.91824 1.24954 0.95201 0.94180
0.98159 1.69987 1.19117 1.47577 1.13705 0.86732 0.82603 0.79344
0.79922 1.19841 1.21182 1.20080 1.23107 1.05454 1.03762 0.92210
1.22544 0.92713 1.02480 1.00037 1.74780 1.15879 1.02097 1.21561
1.74198 1.16291 1.03841 1.16003 1.22489 0.87257 0.88370 1.09429
1.18503 0.95221 0.88561 1.03078 1.21898 0.95144 0.97259 0.96117
1.22056 1.01628 0.93118 1.01918 1.22941 0.88588 1.00419 0.93743
1.67790 1.18374 1.18648 1.13823 1.22987 0.99675 0.86469 0.92783
0.89641 0.88098 0.89106 0.88949 0.91441 0.92653 0.91444 0.90146
0.89304 0.91648 0.84284 0.84158 0.82356 0.81358
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.67 9.34 59.85 0.56 1.23 16
2 N -0.47 -7.10 3.24 -121.46 -0.39 -7.49 16
3 C 0.17 3.18 8.07 -88.18 -0.71 2.47 16
4 S 0.04 0.76 20.56 -107.50 -2.21 -1.45 16
5 C -0.04 -0.98 5.33 37.15 0.20 -0.78 16
6 C 0.04 1.01 1.72 -155.66 -0.27 0.74 16
7 C -0.50 -12.60 7.59 -34.44 -0.26 -12.86 16
8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16
9 C 0.08 2.08 5.43 -17.82 -0.10 1.99 16
10 N -0.87 -23.54 12.65 55.43 0.70 -22.84 16
11 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16
12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
13 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16
14 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16
15 C -0.21 -4.32 9.88 -26.73 -0.26 -4.59 16
16 C -0.14 -3.12 9.16 -26.73 -0.24 -3.36 16
17 N -0.30 -6.20 11.59 30.71 0.36 -5.85 16
18 N -0.26 -5.00 12.02 32.59 0.39 -4.61 16
19 C 0.19 3.01 7.72 -153.76 -1.19 1.83 16
20 C -0.05 -0.60 5.88 -104.82 -0.62 -1.22 16
21 C -0.08 -0.70 8.88 -38.88 -0.35 -1.05 16
22 C -0.17 -1.22 10.10 -39.49 -0.40 -1.62 16
23 C 0.10 0.84 11.17 -17.48 -0.20 0.65 16
24 N -0.48 -5.45 10.35 -12.91 -0.13 -5.58 16
25 C 0.14 1.72 10.87 -17.12 -0.19 1.53 16
26 H 0.09 0.70 7.80 -51.93 -0.40 0.29 16
27 H 0.10 0.97 7.67 -51.93 -0.40 0.57 16
28 H 0.09 0.65 6.52 -51.93 -0.34 0.31 16
29 H 0.09 2.25 8.14 -51.92 -0.42 1.83 16
30 H 0.07 1.41 7.96 -51.92 -0.41 0.99 16
31 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16
32 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16
33 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16
34 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16
35 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16
36 H 0.14 1.00 5.03 -52.49 -0.26 0.74 16
37 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16
38 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16
39 H 0.17 2.05 7.98 -52.49 -0.42 1.63 16
LS Contribution 348.27 15.07 5.25 5.25
Total: -1.00 -30.84 348.27 -9.82 -40.67
By element:
Atomic # 1 Polarization: 6.61 SS G_CDS: -4.74 Total: 1.87 kcal
Atomic # 6 Polarization: -11.03 SS G_CDS: -4.02 Total: -15.05 kcal
Atomic # 7 Polarization: -47.29 SS G_CDS: 0.92 Total: -46.37 kcal
Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal
Atomic # 16 Polarization: 0.76 SS G_CDS: -2.21 Total: -1.45 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -30.84 -9.82 -40.67 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000594882749.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 181.002 kcal
(2) G-P(sol) polarization free energy of solvation -30.845 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.157 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) 140.337 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds