Wall clock time and date at job start Tue Mar 31 2020 11:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36566 * 127.17188 * 2 1 4 4 S 1.76205 * 126.38583 * 359.97438 * 3 2 1 5 5 C 1.80997 * 100.00337 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.46938 * 179.97438 * 5 4 3 7 7 C 1.50701 * 115.54996 * 41.05526 * 6 5 4 8 8 H 1.07997 * 120.00223 * 265.13279 * 7 6 5 9 9 C 1.37875 * 119.99907 * 85.13742 * 7 6 5 10 10 N 1.31518 * 120.00415 * 4.55303 * 9 7 6 11 11 Si 1.86800 * 120.00112 * 184.55004 * 9 7 6 12 12 H 1.48505 * 109.47086 * 59.99679 * 11 9 7 13 13 H 1.48499 * 109.47566 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47051 * 300.00296 * 11 9 7 15 15 C 1.53000 * 117.50262 * 255.33968 * 6 5 4 16 16 C 1.52995 * 60.00469 * 252.51595 * 15 6 5 17 17 N 1.31440 * 107.23583 * 179.97438 * 3 2 1 18 18 N 1.28509 * 110.07708 * 359.76578 * 17 3 2 19 19 C 1.31260 * 109.96206 * 0.39176 * 18 17 3 20 20 C 1.47841 * 126.46752 * 179.88536 * 19 18 17 21 21 C 1.39999 * 120.56162 * 162.00811 * 20 19 18 22 22 C 1.38361 * 118.29197 * 180.29363 * 21 20 19 23 23 C 1.38353 * 119.30316 * 359.46109 * 22 21 20 24 24 N 1.31909 * 121.08208 * 0.55663 * 23 22 21 25 25 C 1.31702 * 121.87469 * 359.71387 * 24 23 22 26 26 H 1.09001 * 109.47220 * 263.76687 * 1 2 3 27 27 H 1.09001 * 109.47256 * 23.77253 * 1 2 3 28 28 H 1.09003 * 109.46845 * 143.76525 * 1 2 3 29 29 H 1.08996 * 109.47357 * 300.00084 * 5 4 3 30 30 H 1.09000 * 109.46777 * 60.00212 * 5 4 3 31 31 H 0.96999 * 120.00568 * 185.01048 * 10 9 7 32 32 H 1.08995 * 117.49759 * 0.02562 * 15 6 5 33 33 H 1.09006 * 117.49717 * 145.02206 * 15 6 5 34 34 H 1.09007 * 117.49842 * 252.51113 * 16 15 6 35 35 H 1.08997 * 117.52061 * 107.48158 * 16 15 6 36 36 H 1.07997 * 120.85932 * 0.02562 * 21 20 19 37 37 H 1.08002 * 120.34468 * 179.70360 * 22 21 20 38 38 H 1.08004 * 119.45499 * 180.27445 * 23 22 21 39 39 H 1.08001 * 119.71527 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2901 1.0882 0.0000 4 16 1.7914 2.7782 -0.0006 5 6 3.4120 3.5842 0.0005 6 6 3.2261 5.1029 -0.0005 7 6 2.1286 5.6240 0.8911 8 1 1.1455 5.8102 0.4849 9 6 2.3797 5.8631 2.2256 10 7 3.5978 5.7224 2.7011 11 14 0.9898 6.3871 3.3583 12 1 -0.0594 5.3363 3.3733 13 1 1.5174 6.5803 4.7328 14 1 0.4064 7.6620 2.8688 15 6 3.4825 5.8452 -1.3136 16 6 4.4784 5.9677 -0.1586 17 7 3.5258 0.6400 0.0006 18 7 3.5289 -0.6450 0.0058 19 6 2.2963 -1.0962 0.0005 20 6 1.8798 -2.5148 0.0016 21 6 0.5773 -2.8739 0.3681 22 6 0.2397 -4.2157 0.3583 23 6 1.1875 -5.1497 -0.0205 24 7 2.4077 -4.7821 -0.3610 25 6 2.7784 -3.5183 -0.3624 26 1 -0.3634 -0.1116 1.0216 27 1 -0.3634 0.9405 -0.4143 28 1 -0.3633 -0.8290 -0.6075 29 1 3.9654 3.2861 0.8909 30 1 3.9667 3.2859 -0.8890 31 1 3.7615 5.8194 3.6523 32 1 3.7832 5.2515 -2.1768 33 1 2.8571 6.7106 -1.5329 34 1 4.5083 6.9138 0.3820 35 1 5.4346 5.4547 -0.2615 36 1 -0.1443 -2.1234 0.6553 37 1 -0.7545 -4.5302 0.6397 38 1 0.9252 -6.1973 -0.0333 39 1 3.7868 -3.2565 -0.6470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594882749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:08 Heat of formation + Delta-G solvation = 123.968415 kcal Electronic energy + Delta-G solvation = -22822.297199 eV Core-core repulsion = 19471.851248 eV Total energy + Delta-G solvation = -3350.445951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.91228 -40.99958 -38.46603 -36.29835 -34.17421 -34.00495 -33.02425 -30.71933 -29.44671 -28.76884 -27.39728 -25.22461 -24.85104 -23.42171 -22.90650 -22.25071 -21.13459 -19.05504 -18.22596 -17.95324 -17.60264 -17.45314 -16.98897 -16.62588 -16.55877 -15.64433 -15.30356 -14.99302 -14.96863 -14.75917 -14.60336 -14.39307 -14.05991 -13.55662 -13.40181 -13.01870 -12.94423 -12.81033 -12.74477 -12.39299 -12.07262 -11.94883 -11.80312 -11.52263 -11.35606 -11.31555 -10.92414 -10.78626 -10.57892 -10.41093 -9.97710 -9.89608 -8.47450 -8.10916 -6.24246 -0.45417 0.15568 0.17398 0.76699 1.32964 1.45651 1.46477 1.52892 1.56148 1.67801 2.44284 2.76723 2.97865 3.19042 3.44294 3.46941 3.55640 3.74427 3.75779 3.91077 4.16559 4.17918 4.21951 4.33417 4.44989 4.47191 4.54323 4.64997 4.67402 4.74795 4.80371 4.94531 4.99960 5.01277 5.10188 5.23735 5.47631 5.56016 5.65309 5.66115 5.75498 6.32791 6.81576 6.87371 7.43999 7.45453 8.96516 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.003230 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.272948 B = 8667.864263 C = 9321.775925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.460 5.460 3 C 0.150 3.850 4 S 0.059 5.941 5 C -0.038 4.038 6 C 0.020 3.980 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.036 3.964 10 N -0.902 5.902 11 Si 0.941 3.059 12 H -0.264 1.264 13 H -0.291 1.291 14 H -0.270 1.270 15 C -0.181 4.181 16 C -0.148 4.148 17 N -0.337 5.337 18 N -0.309 5.309 19 C 0.216 3.784 20 C -0.078 4.078 21 C -0.068 4.068 22 C -0.151 4.151 23 C 0.104 3.896 24 N -0.503 5.503 25 C 0.129 3.871 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.124 0.876 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.260 0.740 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.163 0.837 37 H 0.186 0.814 38 H 0.194 0.806 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.894 -18.188 -5.280 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.153 5.153 3 C -0.224 4.224 4 S 0.290 5.710 5 C -0.188 4.188 6 C 0.018 3.982 7 C -0.542 4.542 8 H 0.081 0.919 9 C -0.166 4.166 10 N -0.539 5.539 11 Si 0.766 3.234 12 H -0.188 1.188 13 H -0.216 1.216 14 H -0.195 1.195 15 C -0.218 4.218 16 C -0.187 4.187 17 N -0.181 5.181 18 N -0.150 5.150 19 C -0.052 4.052 20 C -0.083 4.083 21 C -0.095 4.095 22 C -0.170 4.170 23 C -0.053 4.053 24 N -0.211 5.211 25 C -0.030 4.030 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.142 0.858 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.181 0.819 37 H 0.203 0.797 38 H 0.211 0.789 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.773 -18.243 -5.372 22.366 hybrid contribution -0.452 0.802 1.161 1.482 sum -12.225 -17.441 -4.210 21.711 Atomic orbital electron populations 1.22817 0.72323 1.07315 1.06324 1.46523 1.10032 1.03412 1.55347 1.27930 0.90026 0.98532 1.05900 1.85597 1.12306 0.82156 1.90948 1.23032 0.94080 0.98837 1.02806 1.18620 0.97200 0.86425 0.95949 1.20532 0.95761 1.44210 0.93717 0.91928 1.25618 0.96963 0.94444 0.99577 1.70114 1.20827 1.49389 1.13563 0.85873 0.80307 0.79300 0.77916 1.18843 1.21643 1.19496 1.23115 1.03569 1.03286 0.91810 1.22433 0.93241 1.01582 1.01472 1.74656 1.17574 1.03300 1.22614 1.74109 1.18594 1.03254 1.19010 1.23078 0.86492 0.89829 1.05818 1.18539 0.97140 0.86396 1.06259 1.22234 0.93759 0.98961 0.94596 1.22526 1.03151 0.91707 0.99624 1.23675 0.87569 1.02532 0.91504 1.67817 1.20374 1.17899 1.15044 1.22815 0.99395 0.87212 0.93577 0.87289 0.87788 0.85770 0.92488 0.91056 0.93121 0.89113 0.89598 0.91466 0.91198 0.81932 0.79706 0.78878 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 9.34 127.77 1.19 2.06 16 2 N -0.46 -13.48 3.24 -538.17 -1.74 -15.22 16 3 C 0.15 5.71 8.07 179.50 1.45 7.16 16 4 S 0.06 2.28 20.56 -56.49 -1.16 1.12 16 5 C -0.04 -1.72 5.33 71.98 0.38 -1.33 16 6 C 0.02 0.95 1.72 -52.93 -0.09 0.86 16 7 C -0.50 -25.59 7.59 25.60 0.19 -25.39 16 8 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 9 C 0.04 1.87 5.43 84.65 0.46 2.33 16 10 N -0.90 -50.41 12.65 21.45 0.27 -50.14 16 11 Si 0.94 41.31 29.54 68.60 2.03 43.33 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 13 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 C -0.18 -7.40 9.88 30.59 0.30 -7.09 16 16 C -0.15 -6.83 9.16 30.60 0.28 -6.55 16 17 N -0.34 -14.62 11.59 -56.75 -0.66 -15.28 16 18 N -0.31 -12.28 12.02 -50.80 -0.61 -12.89 16 19 C 0.22 6.76 7.72 136.21 1.05 7.81 16 20 C -0.08 -1.82 5.88 -20.00 -0.12 -1.94 16 21 C -0.07 -0.98 8.88 22.73 0.20 -0.77 16 22 C -0.15 -1.41 10.10 22.33 0.23 -1.18 16 23 C 0.10 1.33 11.17 84.71 0.95 2.28 16 24 N -0.50 -10.58 10.35 -194.74 -2.01 -12.59 16 25 C 0.13 3.12 10.87 85.03 0.92 4.05 16 26 H 0.11 1.35 7.80 -2.39 -0.02 1.33 16 27 H 0.10 1.72 7.67 -2.39 -0.02 1.70 16 28 H 0.12 1.23 6.52 -2.39 -0.02 1.21 16 29 H 0.06 2.93 8.14 -2.40 -0.02 2.91 16 30 H 0.07 3.07 7.96 -2.40 -0.02 3.05 16 31 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 32 H 0.09 3.28 8.09 -2.39 -0.02 3.26 16 33 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 34 H 0.07 3.36 8.14 -2.38 -0.02 3.35 16 35 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.16 1.49 5.03 -2.91 -0.01 1.48 16 37 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 38 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.15 3.99 7.98 -2.91 -0.02 3.96 16 Total: -1.00 -71.05 348.27 4.59 -66.46 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.07 Total: 12.94 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 7.40 Total: -17.72 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -4.75 Total: -106.13 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.16 Total: 1.12 kcal Total: -71.05 4.59 -66.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594882749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.425 kcal (2) G-P(sol) polarization free energy of solvation -71.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds