Wall clock time and date at job start Tue Mar 31 2020 12:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99980 * 2 1 4 4 C 1.53001 * 109.46835 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47306 * 64.99957 * 4 3 2 6 6 C 1.36865 * 119.99710 * 264.38739 * 5 4 3 7 7 H 1.08002 * 119.99838 * 131.44124 * 6 5 4 8 8 C 1.39038 * 119.99691 * 311.44237 * 6 5 4 9 9 N 1.31370 * 120.00399 * 3.62101 * 8 6 5 10 10 Si 1.86796 * 119.99569 * 183.62058 * 8 6 5 11 11 H 1.48500 * 109.47557 * 60.00170 * 10 8 6 12 12 H 1.48505 * 109.46994 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47366 * 299.99680 * 10 8 6 14 14 C 1.34770 * 120.00009 * 84.38164 * 5 4 3 15 15 O 1.21651 * 120.00616 * 4.42771 * 14 5 4 16 16 C 1.47323 * 119.99784 * 184.41920 * 14 5 4 17 17 N 1.33742 * 119.37367 * 354.57812 * 16 14 5 18 18 C 1.30725 * 122.74312 * 180.02562 * 17 16 14 19 19 C 1.40911 * 120.44799 * 359.97438 * 18 17 16 20 20 C 1.40196 * 121.79794 * 179.72423 * 19 18 17 21 21 C 1.36335 * 119.57872 * 179.78187 * 20 19 18 22 22 C 1.39232 * 121.05878 * 0.51827 * 21 20 19 23 23 C 1.36373 * 120.93083 * 359.73451 * 22 21 20 24 24 C 1.40066 * 119.49687 * 0.02562 * 23 22 21 25 25 C 1.39333 * 119.37503 * 174.60040 * 16 14 5 26 26 O 1.35452 * 120.82420 * 0.02562 * 25 16 14 27 27 H 1.09000 * 109.47345 * 300.00460 * 1 2 3 28 28 H 1.08994 * 109.46964 * 60.00155 * 1 2 3 29 29 H 1.08997 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47347 * 59.99367 * 3 2 1 31 31 H 1.09004 * 109.46450 * 299.99759 * 3 2 1 32 32 H 1.08997 * 109.47070 * 304.99515 * 4 3 2 33 33 H 1.09003 * 109.46992 * 184.99633 * 4 3 2 34 34 H 0.96997 * 120.00612 * 180.02562 * 9 8 6 35 35 H 1.08001 * 119.77701 * 179.97438 * 18 17 16 36 36 H 1.08005 * 120.20731 * 0.03877 * 20 19 18 37 37 H 1.08002 * 119.47189 * 180.25559 * 21 20 19 38 38 H 1.08007 * 119.53581 * 179.75929 * 22 21 20 39 39 H 1.08002 * 120.25029 * 180.02562 * 23 22 21 40 40 H 0.96705 * 113.99927 * 90.00142 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2073 -0.7836 -1.3042 7 1 3.7844 -1.3741 -2.1036 8 6 4.9870 -1.3927 -0.3273 9 7 5.4423 -0.6882 0.6836 10 14 5.3871 -3.2131 -0.4525 11 1 6.1260 -3.4719 -1.7143 12 1 6.2271 -3.6159 0.7039 13 1 4.1267 -3.9985 -0.4469 14 6 4.1525 1.3210 -2.3539 15 8 4.0249 2.5290 -2.2888 16 6 4.5004 0.6851 -3.6365 17 7 4.7448 -0.6293 -3.6721 18 6 5.0594 -1.2604 -4.7728 19 6 5.1547 -0.5630 -5.9935 20 6 5.4955 -1.2103 -7.1895 21 6 5.5704 -0.4920 -8.3458 22 6 5.3243 0.8783 -8.3574 23 6 4.9955 1.5412 -7.2118 24 6 4.9048 0.8327 -6.0069 25 6 4.5691 1.4646 -4.7893 26 8 4.3208 2.7954 -4.7432 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8898 31 1 1.6886 1.8463 -0.8901 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1765 0.0889 34 1 5.9865 -1.1130 1.3649 35 1 5.2474 -2.3236 -4.7464 36 1 5.6932 -2.2721 -7.1954 37 1 5.8290 -0.9932 -9.2669 38 1 5.3943 1.4240 -9.2868 39 1 4.8064 2.6043 -7.2335 40 1 5.1047 3.3361 -4.5745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597754394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:35 Heat of formation + Delta-G solvation = -38.411949 kcal Electronic energy + Delta-G solvation = -26806.956661 eV Core-core repulsion = 22974.423746 eV Total energy + Delta-G solvation = -3832.532914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63648 -38.62149 -37.31948 -36.73787 -36.41979 -34.53084 -31.72881 -31.45475 -30.98865 -29.40947 -28.54320 -25.79047 -24.76969 -23.97123 -23.63656 -21.85549 -21.76772 -19.54702 -18.31310 -18.00161 -17.24414 -16.47519 -15.80916 -15.61538 -15.38617 -15.08988 -14.77857 -14.40240 -14.27900 -14.14291 -13.85757 -13.74330 -13.41222 -13.31084 -12.96696 -12.52936 -11.91613 -11.84010 -11.72466 -11.44078 -11.28436 -11.12271 -10.94987 -10.88451 -10.78135 -10.56638 -10.27590 -9.99496 -9.66264 -9.06614 -8.97302 -8.83568 -8.77131 -8.17003 -7.66871 -7.19107 -6.14795 -3.84384 0.52727 1.05339 2.04585 3.09726 3.31718 3.32808 3.35782 3.97870 4.20249 4.37019 4.52165 4.57958 4.74551 4.85365 4.90315 5.00618 5.01941 5.23308 5.32246 5.39452 5.54824 5.71227 5.77564 5.84002 5.92829 5.94966 6.03366 6.09552 6.16445 6.19362 6.37186 6.42204 6.46915 6.61129 6.75000 6.87597 7.00250 7.41824 7.78501 7.91764 8.03944 8.13580 8.49093 8.69521 9.26096 9.55109 9.98823 10.86621 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.005219 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.039672 B = 5363.296542 C = 6497.838740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.052 3.948 4 C 0.108 3.892 5 N -0.404 5.404 6 C -0.271 4.271 7 H 0.110 0.890 8 C 0.038 3.962 9 N -0.882 5.882 10 Si 0.923 3.077 11 H -0.272 1.272 12 H -0.289 1.289 13 H -0.274 1.274 14 C 0.506 3.494 15 O -0.595 6.595 16 C 0.072 3.928 17 N -0.390 5.390 18 C 0.109 3.891 19 C -0.097 4.097 20 C -0.090 4.090 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.098 4.098 24 C -0.059 4.059 25 C 0.107 3.893 26 O -0.465 6.465 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.267 0.733 35 H 0.160 0.840 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 -0.414 -11.711 11.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.026 4.026 4 C -0.015 4.015 5 N -0.119 5.119 6 C -0.401 4.401 7 H 0.127 0.873 8 C -0.165 4.165 9 N -0.521 5.521 10 Si 0.750 3.250 11 H -0.197 1.197 12 H -0.215 1.215 13 H -0.200 1.200 14 C 0.295 3.705 15 O -0.482 6.482 16 C -0.055 4.055 17 N -0.100 5.100 18 C -0.064 4.064 19 C -0.100 4.100 20 C -0.110 4.110 21 C -0.144 4.144 22 C -0.134 4.134 23 C -0.116 4.116 24 C -0.064 4.064 25 C 0.057 3.943 26 O -0.273 6.273 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.178 0.822 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.449 -0.480 -10.649 10.758 hybrid contribution 0.539 -0.124 -0.728 0.914 sum -0.910 -0.604 -11.377 11.429 Atomic orbital electron populations 1.22636 0.83484 1.01702 0.98775 1.88139 1.17322 1.27760 1.95028 1.23045 0.96641 0.84277 0.98593 1.21709 0.88892 0.99386 0.91519 1.43323 1.53659 1.07892 1.07000 1.19831 1.27195 0.82032 1.11015 0.87325 1.25504 0.95583 0.99824 0.95578 1.69658 1.34426 1.36650 1.11337 0.86064 0.78462 0.82880 0.77568 1.19701 1.21485 1.19975 1.17866 0.82719 0.85870 0.84059 1.90646 1.58518 1.13435 1.85582 1.21820 0.99818 0.89713 0.94120 1.68731 1.06418 1.08163 1.26682 1.23522 0.95608 1.00428 0.86873 1.19171 1.01712 0.92978 0.96112 1.20983 0.98488 0.99929 0.91550 1.20853 1.01015 0.94347 0.98155 1.20872 0.99739 0.94675 0.98080 1.20873 0.99095 1.00175 0.91439 1.18481 1.00220 0.93541 0.94145 1.19342 0.98577 0.85508 0.90830 1.84650 1.36559 1.12727 1.93390 0.95159 0.95104 0.90429 0.94157 0.94318 0.85575 0.91304 0.92278 0.82242 0.85105 0.86050 0.86024 0.85163 0.75420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -8.06 10.44 -35.23 -0.37 -8.43 16 3 C 0.05 1.13 6.24 37.16 0.23 1.36 16 4 C 0.11 2.66 5.27 -4.04 -0.02 2.64 16 5 N -0.40 -10.59 2.46 -116.07 -0.29 -10.87 16 6 C -0.27 -7.15 7.19 -15.01 -0.11 -7.25 16 7 H 0.11 2.86 5.99 -52.49 -0.31 2.55 16 8 C 0.04 1.00 5.35 -17.45 -0.09 0.90 16 9 N -0.88 -23.88 11.02 55.50 0.61 -23.27 16 10 Si 0.92 20.60 29.55 -169.99 -5.02 15.57 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 14 C 0.51 13.07 7.55 -12.57 -0.09 12.97 16 15 O -0.60 -15.85 14.75 -16.90 -0.25 -16.10 16 16 C 0.07 1.65 6.67 -82.93 -0.55 1.10 16 17 N -0.39 -8.50 6.23 -9.40 -0.06 -8.56 16 18 C 0.11 1.90 11.02 -17.01 -0.19 1.71 16 19 C -0.10 -1.53 5.75 -106.79 -0.61 -2.14 16 20 C -0.09 -1.09 9.79 -39.53 -0.39 -1.48 16 21 C -0.13 -1.35 9.95 -39.90 -0.40 -1.75 16 22 C -0.11 -1.29 9.96 -39.88 -0.40 -1.69 16 23 C -0.10 -1.34 9.61 -39.57 -0.38 -1.72 16 24 C -0.06 -0.99 5.75 -106.71 -0.61 -1.60 16 25 C 0.11 2.12 6.75 -38.04 -0.26 1.87 16 26 O -0.46 -8.72 10.89 -40.18 -0.44 -9.16 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.13 3.32 5.55 -51.93 -0.29 3.03 16 33 H 0.07 1.69 7.54 -51.93 -0.39 1.30 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 35 H 0.16 2.26 8.06 -52.49 -0.42 1.83 16 36 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 39 H 0.13 1.60 7.71 -52.49 -0.40 1.20 16 40 H 0.39 5.84 9.06 45.56 0.41 6.25 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -32.67 341.61 -7.35 -40.02 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.93 Total: 9.08 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -2.76 Total: 6.56 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.27 Total: -42.70 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.05 Total: -33.68 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.67 -7.35 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.608 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds