Wall clock time and date at job start Tue Mar 31 2020 12:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99980 * 2 1 4 4 C 1.53001 * 109.46835 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47306 * 64.99957 * 4 3 2 6 6 C 1.36865 * 119.99710 * 264.38739 * 5 4 3 7 7 H 1.08002 * 119.99838 * 131.44124 * 6 5 4 8 8 C 1.39038 * 119.99691 * 311.44237 * 6 5 4 9 9 N 1.31370 * 120.00399 * 3.62101 * 8 6 5 10 10 Si 1.86796 * 119.99569 * 183.62058 * 8 6 5 11 11 H 1.48500 * 109.47557 * 60.00170 * 10 8 6 12 12 H 1.48505 * 109.46994 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47366 * 299.99680 * 10 8 6 14 14 C 1.34770 * 120.00009 * 84.38164 * 5 4 3 15 15 O 1.21651 * 120.00616 * 4.42771 * 14 5 4 16 16 C 1.47323 * 119.99784 * 184.41920 * 14 5 4 17 17 N 1.33742 * 119.37367 * 354.57812 * 16 14 5 18 18 C 1.30725 * 122.74312 * 180.02562 * 17 16 14 19 19 C 1.40911 * 120.44799 * 359.97438 * 18 17 16 20 20 C 1.40196 * 121.79794 * 179.72423 * 19 18 17 21 21 C 1.36335 * 119.57872 * 179.78187 * 20 19 18 22 22 C 1.39232 * 121.05878 * 0.51827 * 21 20 19 23 23 C 1.36373 * 120.93083 * 359.73451 * 22 21 20 24 24 C 1.40066 * 119.49687 * 0.02562 * 23 22 21 25 25 C 1.39333 * 119.37503 * 174.60040 * 16 14 5 26 26 O 1.35452 * 120.82420 * 0.02562 * 25 16 14 27 27 H 1.09000 * 109.47345 * 300.00460 * 1 2 3 28 28 H 1.08994 * 109.46964 * 60.00155 * 1 2 3 29 29 H 1.08997 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47347 * 59.99367 * 3 2 1 31 31 H 1.09004 * 109.46450 * 299.99759 * 3 2 1 32 32 H 1.08997 * 109.47070 * 304.99515 * 4 3 2 33 33 H 1.09003 * 109.46992 * 184.99633 * 4 3 2 34 34 H 0.96997 * 120.00612 * 180.02562 * 9 8 6 35 35 H 1.08001 * 119.77701 * 179.97438 * 18 17 16 36 36 H 1.08005 * 120.20731 * 0.03877 * 20 19 18 37 37 H 1.08002 * 119.47189 * 180.25559 * 21 20 19 38 38 H 1.08007 * 119.53581 * 179.75929 * 22 21 20 39 39 H 1.08002 * 120.25029 * 180.02562 * 23 22 21 40 40 H 0.96705 * 113.99927 * 90.00142 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2073 -0.7836 -1.3042 7 1 3.7844 -1.3741 -2.1036 8 6 4.9870 -1.3927 -0.3273 9 7 5.4423 -0.6882 0.6836 10 14 5.3871 -3.2131 -0.4525 11 1 6.1260 -3.4719 -1.7143 12 1 6.2271 -3.6159 0.7039 13 1 4.1267 -3.9985 -0.4469 14 6 4.1525 1.3210 -2.3539 15 8 4.0249 2.5290 -2.2888 16 6 4.5004 0.6851 -3.6365 17 7 4.7448 -0.6293 -3.6721 18 6 5.0594 -1.2604 -4.7728 19 6 5.1547 -0.5630 -5.9935 20 6 5.4955 -1.2103 -7.1895 21 6 5.5704 -0.4920 -8.3458 22 6 5.3243 0.8783 -8.3574 23 6 4.9955 1.5412 -7.2118 24 6 4.9048 0.8327 -6.0069 25 6 4.5691 1.4646 -4.7893 26 8 4.3208 2.7954 -4.7432 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8898 31 1 1.6886 1.8463 -0.8901 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1765 0.0889 34 1 5.9865 -1.1130 1.3649 35 1 5.2474 -2.3236 -4.7464 36 1 5.6932 -2.2721 -7.1954 37 1 5.8290 -0.9932 -9.2669 38 1 5.3943 1.4240 -9.2868 39 1 4.8064 2.6043 -7.2335 40 1 5.1047 3.3361 -4.5745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597754394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:34 Heat of formation + Delta-G solvation = -60.334478 kcal Electronic energy + Delta-G solvation = -26807.907293 eV Core-core repulsion = 22974.423746 eV Total energy + Delta-G solvation = -3833.483546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.98303 -40.32396 -38.79671 -38.29816 -37.83008 -36.44518 -33.39607 -32.88986 -32.25220 -30.97902 -30.01742 -27.29025 -26.60145 -25.41997 -24.90026 -23.48233 -22.98515 -21.30370 -19.87983 -19.47809 -18.67626 -17.87387 -17.40395 -17.16131 -16.91923 -16.72659 -16.22017 -15.97880 -15.94594 -15.73258 -15.23629 -15.07361 -14.88343 -14.58846 -14.38717 -14.11442 -13.49691 -13.35982 -13.05311 -12.93605 -12.85058 -12.66880 -12.58365 -12.51810 -12.22026 -12.06702 -11.98912 -11.77952 -10.85458 -10.83686 -10.73935 -10.52700 -10.00679 -9.85059 -9.22919 -8.84169 -8.07286 -5.84945 -0.72059 -0.13414 0.86624 1.50041 1.53026 1.60858 1.79461 2.41939 2.54849 2.79171 3.00017 3.04372 3.20592 3.31774 3.66085 3.74262 3.86300 3.96203 4.09098 4.22832 4.34775 4.36403 4.41550 4.50778 4.53758 4.61321 4.64237 4.73249 4.77450 4.82836 4.86800 5.09978 5.15587 5.43744 5.48446 5.50393 5.58601 5.82761 5.96160 6.14735 6.39813 6.66599 6.69622 7.07717 7.33049 7.63138 8.05112 8.94311 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.005219 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.039672 B = 5363.296542 C = 6497.838740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.066 3.934 4 C 0.107 3.893 5 N -0.421 5.421 6 C -0.275 4.275 7 H 0.105 0.895 8 C -0.009 4.009 9 N -0.917 5.917 10 Si 0.982 3.018 11 H -0.258 1.258 12 H -0.290 1.290 13 H -0.270 1.270 14 C 0.495 3.505 15 O -0.619 6.619 16 C 0.023 3.977 17 N -0.432 5.432 18 C 0.110 3.890 19 C -0.100 4.100 20 C -0.092 4.092 21 C -0.107 4.107 22 C -0.096 4.096 23 C -0.114 4.114 24 C -0.077 4.077 25 C 0.112 3.888 26 O -0.476 6.476 27 H 0.054 0.946 28 H 0.035 0.965 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.108 0.892 33 H 0.054 0.946 34 H 0.264 0.736 35 H 0.191 0.809 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.138 0.862 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 -2.210 -15.896 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.012 4.012 4 C -0.016 4.016 5 N -0.136 5.136 6 C -0.404 4.404 7 H 0.122 0.878 8 C -0.208 4.208 9 N -0.558 5.558 10 Si 0.806 3.194 11 H -0.183 1.183 12 H -0.216 1.216 13 H -0.195 1.195 14 C 0.285 3.715 15 O -0.508 6.508 16 C -0.102 4.102 17 N -0.142 5.142 18 C -0.064 4.064 19 C -0.103 4.103 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.132 4.132 24 C -0.082 4.082 25 C 0.062 3.938 26 O -0.287 6.287 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.208 0.792 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.178 0.822 39 H 0.156 0.844 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.178 -2.266 -14.848 15.066 hybrid contribution 0.458 0.502 0.160 0.698 sum -0.720 -1.764 -14.688 14.811 Atomic orbital electron populations 1.22886 0.80647 1.03396 1.00143 1.88072 1.20490 1.27780 1.95282 1.22811 0.94650 0.84555 0.99175 1.21606 0.91095 0.97966 0.90933 1.43485 1.54596 1.08167 1.07349 1.19868 1.27496 0.82112 1.10935 0.87771 1.26276 0.95487 1.03811 0.95222 1.69803 1.35745 1.38120 1.12166 0.85162 0.78304 0.78084 0.77827 1.18262 1.21625 1.19514 1.18491 0.81784 0.85882 0.85295 1.90577 1.59412 1.14379 1.86420 1.21448 1.04173 0.91038 0.93562 1.68447 1.08642 1.07887 1.29201 1.24037 0.94272 1.01582 0.86551 1.19419 1.01279 0.92560 0.97043 1.21388 0.97672 1.01780 0.90275 1.21447 0.97671 0.94049 0.99273 1.21405 0.96389 0.95292 0.98424 1.21061 1.00178 1.00839 0.91146 1.18668 1.01155 0.94457 0.93964 1.19526 0.97475 0.85427 0.91404 1.84573 1.37776 1.12907 1.93448 0.92728 0.94671 0.88640 0.91220 0.95759 0.87420 0.92753 0.92628 0.79228 0.81658 0.81617 0.82183 0.84433 0.73942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -18.05 10.44 -148.98 -1.56 -19.61 16 3 C 0.07 2.97 6.24 71.98 0.45 3.42 16 4 C 0.11 5.66 5.27 86.38 0.46 6.11 16 5 N -0.42 -23.48 2.46 -639.37 -1.57 -25.05 16 6 C -0.27 -15.19 7.19 84.10 0.60 -14.58 16 7 H 0.11 5.74 5.99 -2.91 -0.02 5.72 16 8 C -0.01 -0.51 5.35 84.95 0.45 -0.06 16 9 N -0.92 -52.30 11.02 21.68 0.24 -52.06 16 10 Si 0.98 43.10 29.55 68.60 2.03 45.12 16 11 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 12 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 C 0.50 27.31 7.55 86.63 0.65 27.96 16 15 O -0.62 -35.22 14.75 16.97 0.25 -34.97 16 16 C 0.02 1.09 6.67 41.51 0.28 1.37 16 17 N -0.43 -19.35 6.23 -183.65 -1.14 -20.49 16 18 C 0.11 3.72 11.02 85.51 0.94 4.66 16 19 C -0.10 -2.93 5.75 -21.27 -0.12 -3.05 16 20 C -0.09 -1.75 9.79 22.30 0.22 -1.53 16 21 C -0.11 -1.60 9.95 22.06 0.22 -1.38 16 22 C -0.10 -1.63 9.96 22.07 0.22 -1.41 16 23 C -0.11 -2.79 9.61 22.28 0.21 -2.58 16 24 C -0.08 -2.51 5.75 -21.22 -0.12 -2.64 16 25 C 0.11 4.54 6.75 23.27 0.16 4.70 16 26 O -0.48 -18.60 10.89 -66.34 -0.72 -19.32 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.11 6.08 5.55 -2.39 -0.01 6.06 16 33 H 0.05 2.91 7.54 -2.39 -0.02 2.89 16 34 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.19 4.92 8.06 -2.91 -0.02 4.90 16 36 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.14 3.09 7.71 -2.91 -0.02 3.06 16 40 H 0.40 12.76 9.06 -74.05 -0.67 12.09 16 Total: -1.00 -77.61 341.61 3.81 -73.81 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.42 Total: 29.48 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 5.87 Total: 23.09 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -2.48 Total: -97.60 kcal Atomic # 8 Polarization: -71.87 SS G_CDS: -2.03 Total: -73.90 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -77.61 3.81 -73.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.472 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds