Wall clock time and date at job start Tue Mar 31 2020 10:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35909 * 117.00164 * 2 1 4 4 C 1.38825 * 119.99531 * 359.97438 * 3 2 1 5 5 C 1.38204 * 120.18309 * 180.02562 * 4 3 2 6 6 C 1.38073 * 120.17994 * 0.02562 * 5 4 3 7 7 C 1.39317 * 119.98853 * 359.97438 * 6 5 4 8 8 C 1.48454 * 120.08988 * 180.02562 * 7 6 5 9 9 C 1.42190 * 126.84205 * 5.02001 * 8 7 6 10 10 C 1.36625 * 103.79093 * 180.02562 * 9 8 7 11 11 C 1.47527 * 126.83020 * 180.26490 * 10 9 8 12 12 O 1.21581 * 119.99807 * 359.71089 * 11 10 9 13 13 N 1.34775 * 120.00118 * 179.71007 * 11 10 9 14 14 C 1.46503 * 119.99987 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46980 * 35.00387 * 14 13 11 16 16 C 1.52996 * 109.47546 * 275.00483 * 14 13 11 17 17 C 1.50701 * 109.46918 * 155.00010 * 14 13 11 18 18 H 1.07995 * 119.99913 * 35.00806 * 17 14 13 19 19 C 1.37877 * 119.99684 * 215.00559 * 17 14 13 20 20 N 1.31521 * 119.99417 * 184.91815 * 19 17 14 21 21 Si 1.86800 * 120.00446 * 4.91674 * 19 17 14 22 22 H 1.48498 * 109.46769 * 84.83318 * 21 19 17 23 23 H 1.48503 * 109.47078 * 204.83438 * 21 19 17 24 24 H 1.48496 * 109.46888 * 324.83357 * 21 19 17 25 25 O 1.34649 * 106.34281 * 0.02562 * 10 9 8 26 26 N 1.20871 * 111.74314 * 359.97438 * 25 10 9 27 27 C 1.38508 * 119.99549 * 180.30336 * 3 2 1 28 28 H 1.09001 * 109.47646 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47346 * 300.00455 * 1 2 3 30 30 H 1.09001 * 109.47105 * 60.00325 * 1 2 3 31 31 H 1.07999 * 119.91083 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.90889 * 180.02562 * 5 4 3 33 33 H 1.07994 * 120.00499 * 179.97438 * 6 5 4 34 34 H 1.07999 * 128.10658 * 0.02562 * 9 8 7 35 35 H 0.96992 * 120.00362 * 0.02562 * 13 11 10 36 36 H 1.08999 * 109.47043 * 55.03166 * 16 14 13 37 37 H 1.09002 * 109.47297 * 175.03723 * 16 14 13 38 38 H 1.09005 * 109.46840 * 295.03513 * 16 14 13 39 39 H 0.97002 * 119.99236 * 179.97438 * 20 19 17 40 40 H 1.07997 * 120.09187 * 359.96675 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2898 2.3752 -0.0005 5 6 1.9133 3.6086 -0.0011 6 6 3.2916 3.6897 -0.0016 7 6 4.0576 2.5260 -0.0011 8 6 5.5397 2.6105 -0.0011 9 6 6.3264 3.7909 0.0980 10 6 7.6119 3.3304 0.0508 11 6 8.8439 4.1389 0.1205 12 8 8.7724 5.3480 0.2265 13 7 10.0487 3.5373 0.0665 14 6 11.2722 4.3402 0.1351 15 1 11.1132 5.1884 0.8010 16 6 11.6272 4.8493 -1.2633 17 6 12.4007 3.4921 0.6626 18 1 12.4534 2.4441 0.4072 19 6 13.3658 4.0542 1.4710 20 7 14.4020 3.3395 1.8522 21 14 13.2017 5.8306 2.0249 22 1 12.3467 5.8939 3.2374 23 1 14.5463 6.3777 2.3382 24 1 12.5817 6.6322 0.9395 25 8 7.5307 1.9915 -0.0665 26 7 6.3830 1.6132 -0.0933 27 6 3.4292 1.2833 -0.0064 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2114 2.3169 -0.0005 32 1 1.3207 4.5116 -0.0011 33 1 3.7758 4.6550 -0.0024 34 1 5.9872 4.8122 0.1892 35 1 10.1058 2.5728 -0.0184 36 1 10.7768 5.3887 -1.6804 37 1 12.4857 5.5180 -1.1994 38 1 11.8722 4.0039 -1.9063 39 1 15.0812 3.7351 2.4207 40 1 4.0187 0.3784 -0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599222261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:03 Heat of formation + Delta-G solvation = 12.150050 kcal Electronic energy + Delta-G solvation = -24715.909319 eV Core-core repulsion = 20885.568938 eV Total energy + Delta-G solvation = -3830.340381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.96117 -40.44269 -39.12444 -37.94790 -35.19858 -34.37442 -32.60213 -32.08751 -31.12416 -30.26015 -29.69281 -27.69583 -25.40901 -24.47707 -24.05378 -22.87050 -21.94377 -20.63172 -19.82089 -18.98184 -17.73199 -17.70208 -16.90684 -16.55320 -16.27092 -16.12322 -15.80658 -15.58156 -14.79338 -14.35832 -14.17828 -14.10691 -13.77355 -13.59533 -13.27673 -13.27083 -12.58526 -12.53275 -12.45844 -12.10297 -11.77392 -11.68496 -11.60643 -11.26451 -11.17218 -10.89013 -10.80732 -10.68069 -9.97401 -9.74195 -9.72668 -9.28928 -8.99545 -8.77176 -8.55095 -8.32358 -6.28334 -4.33295 0.49659 0.99477 1.07834 2.21755 2.77008 2.83237 3.22462 3.31032 3.36589 3.38784 3.50940 3.63637 3.79048 4.27469 4.37086 4.46722 4.63138 4.69030 4.72581 4.85547 4.99357 5.01068 5.06468 5.10296 5.12151 5.30717 5.38281 5.62816 5.75976 5.88396 6.02991 6.18121 6.24344 6.29640 6.42283 6.57610 6.79377 6.99286 7.04733 7.22167 7.38381 7.85402 8.08280 8.40331 8.57352 8.74390 9.31802 10.83031 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.031830 B = 0.002351 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.457834 B =11906.784398 C =12301.488063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.127 3.873 4 C -0.201 4.201 5 C -0.078 4.078 6 C -0.131 4.131 7 C 0.024 3.976 8 C 0.044 3.956 9 C -0.154 4.154 10 C -0.060 4.060 11 C 0.586 3.414 12 O -0.530 6.530 13 N -0.681 5.681 14 C 0.229 3.771 15 H 0.054 0.946 16 C -0.149 4.149 17 C -0.533 4.533 18 H 0.082 0.918 19 C 0.082 3.918 20 N -0.884 5.884 21 Si 0.873 3.127 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.259 1.259 25 O 0.128 5.872 26 N -0.338 5.338 27 C -0.125 4.125 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.184 0.816 35 H 0.402 0.598 36 H 0.030 0.970 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.269 0.731 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.989 -2.026 -4.259 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.082 3.918 4 C -0.220 4.220 5 C -0.096 4.096 6 C -0.150 4.150 7 C 0.023 3.977 8 C -0.111 4.111 9 C -0.176 4.176 10 C -0.126 4.126 11 C 0.367 3.633 12 O -0.408 6.408 13 N -0.328 5.328 14 C 0.128 3.872 15 H 0.072 0.928 16 C -0.208 4.208 17 C -0.571 4.571 18 H 0.100 0.900 19 C -0.123 4.123 20 N -0.520 5.520 21 Si 0.700 3.300 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.184 1.184 25 O 0.052 5.948 26 N -0.036 5.036 27 C -0.145 4.145 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.201 0.799 35 H 0.236 0.764 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.839 -2.696 -4.186 27.297 hybrid contribution -0.350 1.288 0.436 1.404 sum -27.189 -1.408 -3.750 27.483 Atomic orbital electron populations 1.23081 0.78217 1.04124 1.01379 1.86099 1.21485 1.26658 1.88693 1.18824 0.91889 0.84409 0.96706 1.21345 1.00214 0.92330 1.08088 1.20852 0.94079 0.97221 0.97483 1.21081 0.93700 0.97685 1.02561 1.17359 0.87170 0.93183 0.99978 1.21834 0.94594 0.89373 1.05317 1.22795 0.90147 1.00799 1.03870 1.24708 0.97991 0.83571 1.06317 1.16749 0.81382 0.86245 0.78888 1.90822 1.85805 1.12286 1.51875 1.46761 1.05361 1.11802 1.68909 1.19303 0.81305 0.92224 0.94415 0.92785 1.22233 0.99717 1.00216 0.98614 1.20975 1.06644 0.98061 1.31394 0.89991 1.24948 0.94748 0.97990 0.94600 1.69881 1.10361 1.37102 1.34663 0.86904 0.77654 0.85211 0.80253 1.19729 1.21053 1.18380 1.84976 1.22343 1.21617 1.65886 1.74009 0.89551 1.23250 1.16787 1.20423 0.91581 0.98081 1.04399 0.88099 0.92552 0.92558 0.85163 0.84999 0.84939 0.79866 0.76363 0.95055 0.92505 0.93063 0.92101 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -3.09 10.49 -19.45 -0.20 -3.29 16 3 C 0.13 1.31 6.68 -39.26 -0.26 1.05 16 4 C -0.20 -1.65 9.03 -39.38 -0.36 -2.00 16 5 C -0.08 -0.62 10.03 -39.65 -0.40 -1.02 16 6 C -0.13 -1.26 9.59 -39.24 -0.38 -1.64 16 7 C 0.02 0.29 5.87 -104.91 -0.62 -0.33 16 8 C 0.04 0.61 7.04 -82.52 -0.58 0.03 16 9 C -0.15 -2.13 10.30 -38.65 -0.40 -2.53 16 10 C -0.06 -0.95 7.28 -36.38 -0.26 -1.22 16 11 C 0.59 11.08 7.78 -12.47 -0.10 10.98 16 12 O -0.53 -11.38 16.57 5.29 0.09 -11.29 16 13 N -0.68 -13.42 5.07 -55.98 -0.28 -13.70 16 14 C 0.23 5.24 2.22 -69.08 -0.15 5.09 16 15 H 0.05 1.33 4.73 -51.93 -0.25 1.09 16 16 C -0.15 -3.12 9.47 37.16 0.35 -2.77 16 17 C -0.53 -13.90 9.05 -34.44 -0.31 -14.21 16 18 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 19 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 20 N -0.88 -25.51 13.96 55.43 0.77 -24.74 16 21 Si 0.87 20.86 26.99 -169.99 -4.59 16.27 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.26 -6.03 6.82 56.52 0.39 -5.65 16 25 O 0.13 1.98 11.02 15.53 0.17 2.16 16 26 N -0.34 -5.17 11.79 33.39 0.39 -4.78 16 27 C -0.13 -1.50 9.64 -39.10 -0.38 -1.87 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 31 H 0.13 0.73 6.28 -52.49 -0.33 0.40 16 32 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 33 H 0.13 1.06 7.24 -52.49 -0.38 0.68 16 34 H 0.18 2.12 7.59 -52.49 -0.40 1.72 16 35 H 0.40 7.13 8.41 -40.82 -0.34 6.78 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.14 1.72 7.90 -52.49 -0.41 1.31 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -31.20 350.64 -5.91 -37.10 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.59 Total: 4.13 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.95 Total: -7.15 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.88 Total: -43.21 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.05 Total: -12.42 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.59 Total: 16.27 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.20 -5.91 -37.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599222261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.253 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds