Wall clock time and date at job start Tue Mar 31 2020 10:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35909 * 117.00164 * 2 1 4 4 C 1.38825 * 119.99531 * 359.97438 * 3 2 1 5 5 C 1.38204 * 120.18309 * 180.02562 * 4 3 2 6 6 C 1.38073 * 120.17994 * 0.02562 * 5 4 3 7 7 C 1.39317 * 119.98853 * 359.97438 * 6 5 4 8 8 C 1.48454 * 120.08988 * 180.02562 * 7 6 5 9 9 C 1.42190 * 126.84205 * 5.02001 * 8 7 6 10 10 C 1.36625 * 103.79093 * 180.02562 * 9 8 7 11 11 C 1.47527 * 126.83020 * 180.26490 * 10 9 8 12 12 O 1.21581 * 119.99807 * 359.71089 * 11 10 9 13 13 N 1.34775 * 120.00118 * 179.71007 * 11 10 9 14 14 C 1.46503 * 119.99987 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46980 * 35.00387 * 14 13 11 16 16 C 1.52996 * 109.47546 * 275.00483 * 14 13 11 17 17 C 1.50701 * 109.46918 * 155.00010 * 14 13 11 18 18 H 1.07995 * 119.99913 * 35.00806 * 17 14 13 19 19 C 1.37877 * 119.99684 * 215.00559 * 17 14 13 20 20 N 1.31521 * 119.99417 * 184.91815 * 19 17 14 21 21 Si 1.86800 * 120.00446 * 4.91674 * 19 17 14 22 22 H 1.48498 * 109.46769 * 84.83318 * 21 19 17 23 23 H 1.48503 * 109.47078 * 204.83438 * 21 19 17 24 24 H 1.48496 * 109.46888 * 324.83357 * 21 19 17 25 25 O 1.34649 * 106.34281 * 0.02562 * 10 9 8 26 26 N 1.20871 * 111.74314 * 359.97438 * 25 10 9 27 27 C 1.38508 * 119.99549 * 180.30336 * 3 2 1 28 28 H 1.09001 * 109.47646 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47346 * 300.00455 * 1 2 3 30 30 H 1.09001 * 109.47105 * 60.00325 * 1 2 3 31 31 H 1.07999 * 119.91083 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.90889 * 180.02562 * 5 4 3 33 33 H 1.07994 * 120.00499 * 179.97438 * 6 5 4 34 34 H 1.07999 * 128.10658 * 0.02562 * 9 8 7 35 35 H 0.96992 * 120.00362 * 0.02562 * 13 11 10 36 36 H 1.08999 * 109.47043 * 55.03166 * 16 14 13 37 37 H 1.09002 * 109.47297 * 175.03723 * 16 14 13 38 38 H 1.09005 * 109.46840 * 295.03513 * 16 14 13 39 39 H 0.97002 * 119.99236 * 179.97438 * 20 19 17 40 40 H 1.07997 * 120.09187 * 359.96675 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2898 2.3752 -0.0005 5 6 1.9133 3.6086 -0.0011 6 6 3.2916 3.6897 -0.0016 7 6 4.0576 2.5260 -0.0011 8 6 5.5397 2.6105 -0.0011 9 6 6.3264 3.7909 0.0980 10 6 7.6119 3.3304 0.0508 11 6 8.8439 4.1389 0.1205 12 8 8.7724 5.3480 0.2265 13 7 10.0487 3.5373 0.0665 14 6 11.2722 4.3402 0.1351 15 1 11.1132 5.1884 0.8010 16 6 11.6272 4.8493 -1.2633 17 6 12.4007 3.4921 0.6626 18 1 12.4534 2.4441 0.4072 19 6 13.3658 4.0542 1.4710 20 7 14.4020 3.3395 1.8522 21 14 13.2017 5.8306 2.0249 22 1 12.3467 5.8939 3.2374 23 1 14.5463 6.3777 2.3382 24 1 12.5817 6.6322 0.9395 25 8 7.5307 1.9915 -0.0665 26 7 6.3830 1.6132 -0.0933 27 6 3.4292 1.2833 -0.0064 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2114 2.3169 -0.0005 32 1 1.3207 4.5116 -0.0011 33 1 3.7758 4.6550 -0.0024 34 1 5.9872 4.8122 0.1892 35 1 10.1058 2.5728 -0.0184 36 1 10.7768 5.3887 -1.6804 37 1 12.4857 5.5180 -1.1994 38 1 11.8722 4.0039 -1.9063 39 1 15.0812 3.7351 2.4207 40 1 4.0187 0.3784 -0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599222261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:03 Heat of formation + Delta-G solvation = -8.304295 kcal Electronic energy + Delta-G solvation = -24716.796286 eV Core-core repulsion = 20885.568938 eV Total energy + Delta-G solvation = -3831.227348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.12229 -41.11969 -40.71180 -38.65562 -36.91602 -35.43606 -34.46304 -33.42954 -31.99656 -31.31472 -31.00773 -28.18057 -27.34280 -25.70537 -25.08521 -23.91920 -22.81023 -22.14673 -21.22666 -20.26905 -18.92111 -18.81898 -18.39953 -17.54384 -17.32581 -16.95251 -16.86813 -16.68671 -16.24382 -15.89535 -15.47758 -14.97566 -14.89599 -14.61235 -14.53856 -14.44255 -14.25363 -13.96528 -13.34771 -13.09495 -13.02595 -12.94281 -12.78385 -12.58503 -12.44672 -12.42510 -11.91159 -11.85989 -11.64297 -11.36837 -11.25690 -10.95846 -10.83566 -10.00227 -9.82214 -9.26069 -8.37900 -6.45959 -0.45441 -0.14998 0.36809 1.23990 1.32984 1.37776 1.47339 1.50072 1.93042 2.15791 2.28774 2.34372 2.73764 2.77462 3.01871 3.33949 3.78305 3.80538 3.91492 3.96923 4.16335 4.23211 4.27372 4.40384 4.43965 4.44961 4.57121 4.70904 4.73071 4.74611 4.80005 4.88872 5.05353 5.19421 5.30526 5.34523 5.42313 5.45097 5.57064 5.64516 6.05120 6.37406 6.53639 6.63005 6.89936 7.03273 7.23539 8.76871 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.031830 B = 0.002351 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.457834 B =11906.784398 C =12301.488063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.341 6.341 3 C 0.116 3.884 4 C -0.190 4.190 5 C -0.071 4.071 6 C -0.131 4.131 7 C -0.001 4.001 8 C 0.052 3.948 9 C -0.133 4.133 10 C -0.078 4.078 11 C 0.595 3.405 12 O -0.554 6.554 13 N -0.685 5.685 14 C 0.233 3.767 15 H 0.042 0.958 16 C -0.144 4.144 17 C -0.530 4.530 18 H 0.056 0.944 19 C 0.032 3.968 20 N -0.929 5.929 21 Si 0.928 3.072 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.248 1.248 25 O 0.118 5.882 26 N -0.355 5.355 27 C -0.149 4.149 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.210 0.790 35 H 0.410 0.590 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.271 0.729 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.455 -0.168 -4.611 30.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.071 3.929 4 C -0.209 4.209 5 C -0.089 4.089 6 C -0.150 4.150 7 C -0.002 4.002 8 C -0.104 4.104 9 C -0.154 4.154 10 C -0.144 4.144 11 C 0.378 3.622 12 O -0.434 6.434 13 N -0.332 5.332 14 C 0.130 3.870 15 H 0.060 0.940 16 C -0.202 4.202 17 C -0.568 4.568 18 H 0.074 0.926 19 C -0.169 4.169 20 N -0.567 5.567 21 Si 0.752 3.248 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.171 1.171 25 O 0.044 5.956 26 N -0.055 5.055 27 C -0.169 4.169 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.169 0.831 34 H 0.227 0.773 35 H 0.245 0.755 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -30.318 -0.854 -4.553 30.670 hybrid contribution 0.487 0.585 0.511 0.917 sum -29.831 -0.269 -4.041 30.105 Atomic orbital electron populations 1.23400 0.75941 1.05703 1.02682 1.86072 1.23922 1.26794 1.88679 1.18942 0.91509 0.85531 0.96895 1.21740 1.01711 0.91535 1.05935 1.21299 0.93590 0.98467 0.95552 1.21379 0.94560 0.97434 1.01664 1.17470 0.86147 0.94240 1.02377 1.22209 0.95613 0.88821 1.03725 1.23135 0.89035 1.01853 1.01424 1.24180 0.97360 0.83955 1.08856 1.16800 0.81634 0.86076 0.77658 1.90799 1.86376 1.13390 1.52847 1.46477 1.05112 1.12059 1.69601 1.19088 0.81339 0.91405 0.95173 0.94033 1.22136 1.00150 1.00560 0.97387 1.21153 1.07552 0.97318 1.30812 0.92578 1.25672 0.94516 1.01752 0.94987 1.69990 1.11494 1.39006 1.36188 0.86029 0.77840 0.80966 0.79961 1.19792 1.20372 1.17148 1.84971 1.22659 1.21372 1.66626 1.74007 0.89720 1.24012 1.17782 1.20398 0.92700 0.97568 1.06210 0.86642 0.91186 0.91134 0.82090 0.81375 0.83128 0.77309 0.75450 0.93726 0.92659 0.92347 0.91948 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.31 10.49 -92.52 -0.97 -7.28 16 3 C 0.12 2.26 6.68 22.47 0.15 2.41 16 4 C -0.19 -2.48 9.03 22.40 0.20 -2.27 16 5 C -0.07 -0.84 10.03 22.22 0.22 -0.62 16 6 C -0.13 -2.14 9.59 22.49 0.22 -1.92 16 7 C 0.00 -0.03 5.87 -20.05 -0.12 -0.15 16 8 C 0.05 1.40 7.04 42.98 0.30 1.71 16 9 C -0.13 -3.47 10.30 22.87 0.24 -3.23 16 10 C -0.08 -2.44 7.28 24.34 0.18 -2.26 16 11 C 0.59 22.15 7.78 86.69 0.67 22.82 16 12 O -0.55 -23.17 16.57 -3.97 -0.07 -23.24 16 13 N -0.68 -26.98 5.07 -449.29 -2.28 -29.26 16 14 C 0.23 10.59 2.22 44.24 0.10 10.69 16 15 H 0.04 2.02 4.73 -2.39 -0.01 2.00 16 16 C -0.14 -5.86 9.47 71.98 0.68 -5.18 16 17 C -0.53 -28.13 9.05 25.60 0.23 -27.89 16 18 H 0.06 3.20 8.06 -2.91 -0.02 3.18 16 19 C 0.03 1.74 5.47 84.65 0.46 2.20 16 20 N -0.93 -54.76 13.96 21.45 0.30 -54.46 16 21 Si 0.93 42.97 26.99 68.60 1.85 44.82 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.25 -10.92 6.82 99.48 0.68 -10.24 16 25 O 0.12 3.71 11.02 65.77 0.72 4.43 16 26 N -0.36 -11.01 11.79 -48.91 -0.58 -11.59 16 27 C -0.15 -3.57 9.64 22.58 0.22 -3.35 16 28 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.37 7.66 -2.38 -0.02 0.36 16 30 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 31 H 0.16 1.04 6.28 -2.91 -0.02 1.02 16 32 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 33 H 0.15 1.83 7.24 -2.91 -0.02 1.81 16 34 H 0.21 4.22 7.59 -2.91 -0.02 4.20 16 35 H 0.41 14.81 8.41 -92.71 -0.78 14.03 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 40 H 0.12 3.16 7.90 -2.91 -0.02 3.13 16 Total: -1.00 -68.62 350.64 4.14 -64.48 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.28 Total: 17.88 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 4.87 Total: -5.80 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -2.55 Total: -95.30 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.31 Total: -26.08 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.85 Total: 44.82 kcal Total: -68.62 4.14 -64.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599222261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.175 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds