Wall clock time and date at job start Tue Mar 31 2020 11:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46909 * 2 1 4 4 C 1.46503 * 119.99852 * 274.46512 * 3 2 1 5 5 C 1.50705 * 109.46863 * 264.96331 * 4 3 2 6 6 H 1.08003 * 119.99972 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99613 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00655 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47118 * 60.00239 * 9 7 5 11 11 H 1.48502 * 109.47342 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47285 * 300.00654 * 9 7 5 13 13 C 1.34780 * 120.00282 * 94.46073 * 3 2 1 14 14 O 1.21362 * 119.99527 * 354.63204 * 13 3 2 15 15 C 1.49340 * 119.99857 * 174.62853 * 13 3 2 16 16 O 1.21381 * 120.00012 * 354.44082 * 15 13 3 17 17 N 1.34780 * 119.99763 * 174.44237 * 15 13 3 18 18 C 1.39887 * 120.00041 * 184.99954 * 17 15 13 19 19 C 1.39391 * 119.94512 * 215.16929 * 18 17 15 20 20 C 1.37701 * 120.61660 * 179.97438 * 19 18 17 21 21 C 1.38975 * 120.06799 * 359.97438 * 20 19 18 22 22 O 1.34901 * 133.31099 * 180.02562 * 21 20 19 23 23 C 1.34438 * 110.89457 * 179.97438 * 22 21 20 24 24 C 1.34000 * 110.15818 * 359.97438 * 23 22 21 25 25 C 1.40484 * 119.44062 * 0.02562 * 21 20 19 26 26 C 1.38389 * 119.94482 * 35.18819 * 18 17 15 27 27 H 1.09002 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47316 * 300.00029 * 1 2 3 29 29 H 1.08992 * 109.46881 * 60.00449 * 1 2 3 30 30 H 1.08997 * 109.47096 * 239.99603 * 2 1 3 31 31 H 1.09006 * 109.47148 * 119.99522 * 2 1 3 32 32 H 1.09002 * 109.47134 * 24.96000 * 4 3 2 33 33 H 1.08998 * 109.47048 * 144.96649 * 4 3 2 34 34 H 0.96998 * 120.00711 * 180.02562 * 8 7 5 35 35 H 0.97002 * 119.99681 * 5.00219 * 17 15 13 36 36 H 1.07999 * 119.68961 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.96642 * 179.97438 * 20 19 18 38 38 H 1.07994 * 124.92345 * 179.97438 * 23 22 21 39 39 H 1.08000 * 126.90102 * 179.97438 * 24 23 22 40 40 H 1.08009 * 120.23292 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1693 2.1047 -1.2649 5 6 3.5921 1.9827 -1.7466 6 1 4.3117 1.4219 -1.1686 7 6 3.9748 2.5861 -2.9258 8 7 3.0984 3.2686 -3.6300 9 14 5.7385 2.4355 -3.5225 10 1 6.0708 1.0028 -3.7283 11 1 5.8916 3.1688 -4.8048 12 1 6.6554 3.0155 -2.5086 13 6 2.3285 1.9864 1.1637 14 8 2.1121 1.4235 2.2168 15 6 2.9386 3.3495 1.1570 16 8 3.2482 3.8707 0.1054 17 7 3.1456 4.0008 2.3186 18 6 3.6191 5.3171 2.3078 19 6 4.4912 5.7510 3.3048 20 6 4.9663 7.0435 3.3072 21 6 4.5781 7.9299 2.3097 22 8 4.8700 9.2221 2.0551 23 6 4.2358 9.6479 0.9488 24 6 3.5005 8.6564 0.4275 25 6 3.6992 7.4953 1.3035 26 6 3.2207 6.1863 1.3074 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.4960 1.6796 -2.0093 33 1 1.9260 3.1563 -1.1133 34 1 3.3675 3.6927 -4.4597 35 1 2.9661 3.5569 3.1622 36 1 4.7972 5.0671 4.0827 37 1 5.6412 7.3687 4.0851 38 1 4.3084 10.6447 0.5396 39 1 2.8844 8.7027 -0.4583 40 1 2.5451 5.8521 0.5337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599971975.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:10 Heat of formation + Delta-G solvation = -17.483391 kcal Electronic energy + Delta-G solvation = -26229.395630 eV Core-core repulsion = 22397.770247 eV Total energy + Delta-G solvation = -3831.625384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.30313 -40.40754 -38.66007 -37.13426 -35.65623 -33.94185 -32.68743 -32.64359 -30.51795 -29.48217 -29.00349 -27.07855 -25.02951 -23.40991 -23.05705 -22.30571 -21.27375 -21.06840 -19.28705 -17.84182 -17.39109 -16.82863 -16.57163 -16.28966 -15.98663 -15.81672 -15.08079 -14.88182 -14.26444 -14.20020 -14.05164 -13.65725 -13.40037 -13.07077 -12.98536 -12.73359 -12.60531 -12.38131 -12.20962 -11.95329 -11.68628 -11.58236 -11.08978 -10.94662 -10.79513 -10.62689 -10.49278 -10.13423 -9.99548 -9.87328 -9.69661 -8.73088 -8.33883 -8.19200 -7.92175 -7.74624 -6.02407 -4.03687 0.99502 1.31366 2.16533 2.44763 2.80678 2.92736 3.33380 3.37342 3.41380 3.69423 3.97682 4.07258 4.45975 4.55599 4.76568 4.99561 5.08115 5.23977 5.32397 5.34673 5.40658 5.51565 5.67442 5.68397 5.78295 5.90441 6.02907 6.14232 6.26873 6.29968 6.35103 6.41138 6.51416 6.54053 6.66934 6.88249 7.22111 7.33486 7.34540 7.55966 7.86142 8.07008 8.18521 8.34508 8.65726 8.94985 9.58672 11.06655 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.004770 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.557484 B = 5868.685547 C = 7463.779036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.559 5.559 4 C 0.232 3.768 5 C -0.511 4.511 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.508 3.492 14 O -0.561 6.561 15 C 0.484 3.516 16 O -0.426 6.426 17 N -0.662 5.662 18 C 0.141 3.859 19 C -0.114 4.114 20 C -0.091 4.091 21 C 0.031 3.969 22 O -0.199 6.199 23 C 0.000 4.000 24 C -0.202 4.202 25 C -0.111 4.111 26 C -0.070 4.070 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.060 0.940 34 H 0.262 0.738 35 H 0.416 0.584 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.206 0.794 39 H 0.159 0.841 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 6.934 11.277 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.289 5.289 4 C 0.113 3.887 5 C -0.550 4.550 6 H 0.071 0.929 7 C -0.132 4.132 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.290 3.710 14 O -0.443 6.443 15 C 0.266 3.734 16 O -0.292 6.292 17 N -0.312 5.312 18 C 0.047 3.953 19 C -0.134 4.134 20 C -0.110 4.110 21 C -0.016 4.016 22 O -0.101 6.101 23 C -0.065 4.065 24 C -0.222 4.222 25 C -0.112 4.112 26 C -0.091 4.091 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.253 0.747 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.223 0.777 39 H 0.176 0.824 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.011 7.194 10.916 13.113 hybrid contribution 0.899 -0.251 -0.374 1.006 sum -0.111 6.943 10.543 12.624 Atomic orbital electron populations 1.22101 0.96212 1.01608 1.02266 1.21436 0.93975 0.82742 1.03046 1.48304 1.58899 1.13484 1.08201 1.19869 0.97711 0.93113 0.77985 1.21125 0.94842 1.32713 1.06274 0.92879 1.24771 0.97160 0.94806 0.96473 1.69892 1.34061 1.33970 1.15204 0.86656 0.85362 0.77997 0.77956 1.20377 1.21250 1.20307 1.19747 0.80184 0.86535 0.84559 1.90647 1.55956 1.66668 1.31035 1.20470 0.81293 0.87643 0.84027 1.91049 1.42978 1.66318 1.28861 1.43223 1.66109 1.11728 1.10149 1.17424 0.96647 0.84093 0.97180 1.20661 0.97188 0.95456 1.00099 1.19565 1.02605 0.91137 0.97706 1.19597 1.00185 0.83369 0.98468 1.83978 1.60606 1.24656 1.40877 1.23884 0.95646 0.99976 0.87001 1.22575 1.05328 0.91817 1.02435 1.19760 1.00287 0.94832 0.96343 1.20537 0.99658 0.89917 0.98985 0.92025 0.92699 0.92218 0.89874 0.90569 0.94838 0.92276 0.92832 0.74672 0.84372 0.84842 0.77741 0.82378 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.11 1.94 6.12 -4.04 -0.02 1.92 16 3 N -0.56 -11.77 2.47 -175.60 -0.43 -12.20 16 4 C 0.23 5.70 4.77 -5.19 -0.02 5.68 16 5 C -0.51 -13.89 7.74 -34.44 -0.27 -14.16 16 6 H 0.05 1.47 7.81 -52.48 -0.41 1.06 16 7 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 8 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 C 0.51 10.47 7.68 -11.64 -0.09 10.38 16 14 O -0.56 -11.43 16.05 5.49 0.09 -11.34 16 15 C 0.48 9.80 7.42 -11.64 -0.09 9.72 16 16 O -0.43 -10.11 9.95 5.47 0.05 -10.06 16 17 N -0.66 -10.78 5.33 -10.28 -0.05 -10.83 16 18 C 0.14 2.25 6.24 -83.70 -0.52 1.72 16 19 C -0.11 -1.47 9.93 -39.35 -0.39 -1.86 16 20 C -0.09 -1.15 10.05 -39.50 -0.40 -1.55 16 21 C 0.03 0.46 7.41 -38.46 -0.29 0.17 16 22 O -0.20 -2.70 10.58 3.68 0.04 -2.66 16 23 C 0.00 0.00 11.96 29.24 0.35 0.34 16 24 C -0.20 -2.74 11.14 -37.61 -0.42 -3.16 16 25 C -0.11 -1.78 6.39 -105.17 -0.67 -2.46 16 26 C -0.07 -1.23 8.69 -39.10 -0.34 -1.57 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 31 H 0.08 1.29 7.37 -51.93 -0.38 0.91 16 32 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 33 H 0.06 1.57 5.92 -51.93 -0.31 1.26 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.42 5.71 8.30 -40.82 -0.34 5.37 16 36 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.14 2.74 6.54 -52.48 -0.34 2.39 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -32.62 346.82 -6.97 -39.59 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.71 Total: 5.42 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -2.89 Total: 4.98 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.25 Total: -48.07 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.18 Total: -24.06 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.62 -6.97 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599971975.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.104 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds