Wall clock time and date at job start Tue Mar 31 2020 11:06:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46499 * 109.46909 * 2 1
4 4 C 1.46503 * 119.99852 * 274.46512 * 3 2 1
5 5 C 1.50705 * 109.46863 * 264.96331 * 4 3 2
6 6 H 1.08003 * 119.99972 * 0.02562 * 5 4 3
7 7 C 1.37875 * 119.99613 * 179.97438 * 5 4 3
8 8 N 1.31512 * 120.00655 * 0.02562 * 7 5 4
9 9 Si 1.86802 * 119.99781 * 179.97438 * 7 5 4
10 10 H 1.48507 * 109.47118 * 60.00239 * 9 7 5
11 11 H 1.48502 * 109.47342 * 180.02562 * 9 7 5
12 12 H 1.48502 * 109.47285 * 300.00654 * 9 7 5
13 13 C 1.34780 * 120.00282 * 94.46073 * 3 2 1
14 14 O 1.21362 * 119.99527 * 354.63204 * 13 3 2
15 15 C 1.49340 * 119.99857 * 174.62853 * 13 3 2
16 16 O 1.21381 * 120.00012 * 354.44082 * 15 13 3
17 17 N 1.34780 * 119.99763 * 174.44237 * 15 13 3
18 18 C 1.39887 * 120.00041 * 184.99954 * 17 15 13
19 19 C 1.39391 * 119.94512 * 215.16929 * 18 17 15
20 20 C 1.37701 * 120.61660 * 179.97438 * 19 18 17
21 21 C 1.38975 * 120.06799 * 359.97438 * 20 19 18
22 22 O 1.34901 * 133.31099 * 180.02562 * 21 20 19
23 23 C 1.34438 * 110.89457 * 179.97438 * 22 21 20
24 24 C 1.34000 * 110.15818 * 359.97438 * 23 22 21
25 25 C 1.40484 * 119.44062 * 0.02562 * 21 20 19
26 26 C 1.38389 * 119.94482 * 35.18819 * 18 17 15
27 27 H 1.09002 * 109.46767 * 180.02562 * 1 2 3
28 28 H 1.08990 * 109.47316 * 300.00029 * 1 2 3
29 29 H 1.08992 * 109.46881 * 60.00449 * 1 2 3
30 30 H 1.08997 * 109.47096 * 239.99603 * 2 1 3
31 31 H 1.09006 * 109.47148 * 119.99522 * 2 1 3
32 32 H 1.09002 * 109.47134 * 24.96000 * 4 3 2
33 33 H 1.08998 * 109.47048 * 144.96649 * 4 3 2
34 34 H 0.96998 * 120.00711 * 180.02562 * 8 7 5
35 35 H 0.97002 * 119.99681 * 5.00219 * 17 15 13
36 36 H 1.07999 * 119.68961 * 359.97438 * 19 18 17
37 37 H 1.08002 * 119.96642 * 179.97438 * 20 19 18
38 38 H 1.07994 * 124.92345 * 179.97438 * 23 22 21
39 39 H 1.08000 * 126.90102 * 179.97438 * 24 23 22
40 40 H 1.08009 * 120.23292 * 359.97438 * 26 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1693 2.1047 -1.2649
5 6 3.5921 1.9827 -1.7466
6 1 4.3117 1.4219 -1.1686
7 6 3.9748 2.5861 -2.9258
8 7 3.0984 3.2686 -3.6300
9 14 5.7385 2.4355 -3.5225
10 1 6.0708 1.0028 -3.7283
11 1 5.8916 3.1688 -4.8048
12 1 6.6554 3.0155 -2.5086
13 6 2.3285 1.9864 1.1637
14 8 2.1121 1.4235 2.2168
15 6 2.9386 3.3495 1.1570
16 8 3.2482 3.8707 0.1054
17 7 3.1456 4.0008 2.3186
18 6 3.6191 5.3171 2.3078
19 6 4.4912 5.7510 3.3048
20 6 4.9663 7.0435 3.3072
21 6 4.5781 7.9299 2.3097
22 8 4.8700 9.2221 2.0551
23 6 4.2358 9.6479 0.9488
24 6 3.5005 8.6564 0.4275
25 6 3.6992 7.4953 1.3035
26 6 3.2207 6.1863 1.3074
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 0.5137 -0.8900
30 1 1.8934 -0.5139 -0.8899
31 1 1.8934 -0.5138 0.8901
32 1 1.4960 1.6796 -2.0093
33 1 1.9260 3.1563 -1.1133
34 1 3.3675 3.6927 -4.4597
35 1 2.9661 3.5569 3.1622
36 1 4.7972 5.0671 4.0827
37 1 5.6412 7.3687 4.0851
38 1 4.3084 10.6447 0.5396
39 1 2.8844 8.7027 -0.4583
40 1 2.5451 5.8521 0.5337
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000599971975.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:06:10
Heat of formation + Delta-G solvation = -17.483391 kcal
Electronic energy + Delta-G solvation = -26229.395630 eV
Core-core repulsion = 22397.770247 eV
Total energy + Delta-G solvation = -3831.625384 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.126 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.30313 -40.40754 -38.66007 -37.13426 -35.65623 -33.94185 -32.68743 -32.64359
-30.51795 -29.48217 -29.00349 -27.07855 -25.02951 -23.40991 -23.05705 -22.30571
-21.27375 -21.06840 -19.28705 -17.84182 -17.39109 -16.82863 -16.57163 -16.28966
-15.98663 -15.81672 -15.08079 -14.88182 -14.26444 -14.20020 -14.05164 -13.65725
-13.40037 -13.07077 -12.98536 -12.73359 -12.60531 -12.38131 -12.20962 -11.95329
-11.68628 -11.58236 -11.08978 -10.94662 -10.79513 -10.62689 -10.49278 -10.13423
-9.99548 -9.87328 -9.69661 -8.73088 -8.33883 -8.19200 -7.92175 -7.74624
-6.02407 -4.03687 0.99502 1.31366 2.16533 2.44763 2.80678 2.92736
3.33380 3.37342 3.41380 3.69423 3.97682 4.07258 4.45975 4.55599
4.76568 4.99561 5.08115 5.23977 5.32397 5.34673 5.40658 5.51565
5.67442 5.68397 5.78295 5.90441 6.02907 6.14232 6.26873 6.29968
6.35103 6.41138 6.51416 6.54053 6.66934 6.88249 7.22111 7.33486
7.34540 7.55966 7.86142 8.07008 8.18521 8.34508 8.65726 8.94985
9.58672 11.06655
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.011271 B = 0.004770 C = 0.003751
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2483.557484 B = 5868.685547 C = 7463.779036
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.111 3.889
3 N -0.559 5.559
4 C 0.232 3.768
5 C -0.511 4.511
6 H 0.053 0.947
7 C 0.070 3.930
8 N -0.892 5.892
9 Si 0.892 3.108
10 H -0.278 1.278
11 H -0.287 1.287
12 H -0.277 1.277
13 C 0.508 3.492
14 O -0.561 6.561
15 C 0.484 3.516
16 O -0.426 6.426
17 N -0.662 5.662
18 C 0.141 3.859
19 C -0.114 4.114
20 C -0.091 4.091
21 C 0.031 3.969
22 O -0.199 6.199
23 C 0.000 4.000
24 C -0.202 4.202
25 C -0.111 4.111
26 C -0.070 4.070
27 H 0.061 0.939
28 H 0.054 0.946
29 H 0.059 0.941
30 H 0.083 0.917
31 H 0.076 0.924
32 H 0.034 0.966
33 H 0.060 0.940
34 H 0.262 0.738
35 H 0.416 0.584
36 H 0.139 0.861
37 H 0.134 0.866
38 H 0.206 0.794
39 H 0.159 0.841
40 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.233 6.934 11.277 13.296
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.012 4.012
3 N -0.289 5.289
4 C 0.113 3.887
5 C -0.550 4.550
6 H 0.071 0.929
7 C -0.132 4.132
8 N -0.531 5.531
9 Si 0.720 3.280
10 H -0.204 1.204
11 H -0.213 1.213
12 H -0.203 1.203
13 C 0.290 3.710
14 O -0.443 6.443
15 C 0.266 3.734
16 O -0.292 6.292
17 N -0.312 5.312
18 C 0.047 3.953
19 C -0.134 4.134
20 C -0.110 4.110
21 C -0.016 4.016
22 O -0.101 6.101
23 C -0.065 4.065
24 C -0.222 4.222
25 C -0.112 4.112
26 C -0.091 4.091
27 H 0.080 0.920
28 H 0.073 0.927
29 H 0.078 0.922
30 H 0.101 0.899
31 H 0.094 0.906
32 H 0.052 0.948
33 H 0.077 0.923
34 H 0.072 0.928
35 H 0.253 0.747
36 H 0.156 0.844
37 H 0.152 0.848
38 H 0.223 0.777
39 H 0.176 0.824
40 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -1.011 7.194 10.916 13.113
hybrid contribution 0.899 -0.251 -0.374 1.006
sum -0.111 6.943 10.543 12.624
Atomic orbital electron populations
1.22101 0.96212 1.01608 1.02266 1.21436 0.93975 0.82742 1.03046
1.48304 1.58899 1.13484 1.08201 1.19869 0.97711 0.93113 0.77985
1.21125 0.94842 1.32713 1.06274 0.92879 1.24771 0.97160 0.94806
0.96473 1.69892 1.34061 1.33970 1.15204 0.86656 0.85362 0.77997
0.77956 1.20377 1.21250 1.20307 1.19747 0.80184 0.86535 0.84559
1.90647 1.55956 1.66668 1.31035 1.20470 0.81293 0.87643 0.84027
1.91049 1.42978 1.66318 1.28861 1.43223 1.66109 1.11728 1.10149
1.17424 0.96647 0.84093 0.97180 1.20661 0.97188 0.95456 1.00099
1.19565 1.02605 0.91137 0.97706 1.19597 1.00185 0.83369 0.98468
1.83978 1.60606 1.24656 1.40877 1.23884 0.95646 0.99976 0.87001
1.22575 1.05328 0.91817 1.02435 1.19760 1.00287 0.94832 0.96343
1.20537 0.99658 0.89917 0.98985 0.92025 0.92699 0.92218 0.89874
0.90569 0.94838 0.92276 0.92832 0.74672 0.84372 0.84842 0.77741
0.82378 0.83984
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.44 10.24 37.16 0.38 -2.06 16
2 C 0.11 1.94 6.12 -4.04 -0.02 1.92 16
3 N -0.56 -11.77 2.47 -175.60 -0.43 -12.20 16
4 C 0.23 5.70 4.77 -5.19 -0.02 5.68 16
5 C -0.51 -13.89 7.74 -34.44 -0.27 -14.16 16
6 H 0.05 1.47 7.81 -52.48 -0.41 1.06 16
7 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16
8 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16
9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16
10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16
13 C 0.51 10.47 7.68 -11.64 -0.09 10.38 16
14 O -0.56 -11.43 16.05 5.49 0.09 -11.34 16
15 C 0.48 9.80 7.42 -11.64 -0.09 9.72 16
16 O -0.43 -10.11 9.95 5.47 0.05 -10.06 16
17 N -0.66 -10.78 5.33 -10.28 -0.05 -10.83 16
18 C 0.14 2.25 6.24 -83.70 -0.52 1.72 16
19 C -0.11 -1.47 9.93 -39.35 -0.39 -1.86 16
20 C -0.09 -1.15 10.05 -39.50 -0.40 -1.55 16
21 C 0.03 0.46 7.41 -38.46 -0.29 0.17 16
22 O -0.20 -2.70 10.58 3.68 0.04 -2.66 16
23 C 0.00 0.00 11.96 29.24 0.35 0.34 16
24 C -0.20 -2.74 11.14 -37.61 -0.42 -3.16 16
25 C -0.11 -1.78 6.39 -105.17 -0.67 -2.46 16
26 C -0.07 -1.23 8.69 -39.10 -0.34 -1.57 16
27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
30 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16
31 H 0.08 1.29 7.37 -51.93 -0.38 0.91 16
32 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16
33 H 0.06 1.57 5.92 -51.93 -0.31 1.26 16
34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
35 H 0.42 5.71 8.30 -40.82 -0.34 5.37 16
36 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16
37 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16
38 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16
39 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16
40 H 0.14 2.74 6.54 -52.48 -0.34 2.39 16
LS Contribution 346.82 15.07 5.23 5.23
Total: -1.00 -32.62 346.82 -6.97 -39.59
By element:
Atomic # 1 Polarization: 10.14 SS G_CDS: -4.71 Total: 5.42 kcal
Atomic # 6 Polarization: 7.86 SS G_CDS: -2.89 Total: 4.98 kcal
Atomic # 7 Polarization: -48.32 SS G_CDS: 0.25 Total: -48.07 kcal
Atomic # 8 Polarization: -24.24 SS G_CDS: 0.18 Total: -24.06 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -32.62 -6.97 -39.59 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000599971975.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.104 kcal
(2) G-P(sol) polarization free energy of solvation -32.623 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.518 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds