Wall clock time and date at job start Tue Mar 31 2020 10:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46753 * 2 1 4 4 C 1.50699 * 109.46760 * 240.00900 * 2 1 3 5 5 H 1.08005 * 119.99770 * 239.99668 * 4 2 1 6 6 C 1.37877 * 120.00373 * 59.99657 * 4 2 1 7 7 N 1.31514 * 119.99935 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00277 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46780 * 59.99818 * 8 6 4 10 10 H 1.48495 * 109.47099 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46886 * 300.00031 * 8 6 4 12 12 N 1.46890 * 109.47183 * 120.00607 * 2 1 3 13 13 C 1.46907 * 111.00139 * 274.99788 * 12 2 1 14 14 C 1.50697 * 109.46918 * 180.02562 * 13 12 2 15 15 O 1.21287 * 120.00323 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99636 * 180.02562 * 14 13 12 17 17 C 1.39922 * 119.99994 * 185.26866 * 16 14 13 18 18 C 1.38892 * 120.07642 * 213.49991 * 17 16 14 19 19 C 1.38088 * 119.93459 * 180.29755 * 18 17 16 20 20 C 1.38307 * 120.06736 * 359.47218 * 19 18 17 21 21 C 1.38263 * 120.14151 * 0.27843 * 20 19 18 22 22 C 1.50695 * 119.96477 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.47270 * 359.97438 * 22 21 20 24 24 F 1.39898 * 109.47355 * 119.99772 * 22 21 20 25 25 F 1.39906 * 109.46971 * 240.00109 * 22 21 20 26 26 C 1.38137 * 120.07167 * 359.97438 * 21 20 19 27 27 H 1.09004 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46940 * 299.98958 * 1 2 3 29 29 H 1.08997 * 109.47502 * 59.99430 * 1 2 3 30 30 H 0.96996 * 120.00257 * 179.97438 * 7 6 4 31 31 H 1.00902 * 110.99718 * 151.04944 * 12 2 1 32 32 H 1.08997 * 109.46710 * 60.00277 * 13 12 2 33 33 H 1.09005 * 109.47131 * 300.00196 * 13 12 2 34 34 H 0.96995 * 120.00354 * 5.27352 * 16 14 13 35 35 H 1.08005 * 120.03019 * 0.05039 * 18 17 16 36 36 H 1.07992 * 119.96759 * 179.74747 * 19 18 17 37 37 H 1.07998 * 119.92548 * 180.24969 * 20 19 18 38 38 H 1.07999 * 120.03551 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3223 -1.1190 -4.0082 9 1 1.8279 -2.5193 -4.0085 10 1 1.8276 -0.4186 -5.2205 11 1 3.8073 -1.1184 -4.0080 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2224 2.3469 14 6 2.5886 -0.5219 3.5556 15 8 2.8688 -1.6988 3.4697 16 7 2.7288 0.1201 4.7323 17 6 3.3015 -0.5396 5.8253 18 6 2.8696 -0.2552 7.1144 19 6 3.4411 -0.9035 8.1913 20 6 4.4350 -1.8432 7.9867 21 6 4.8636 -2.1324 6.7044 22 6 5.9473 -3.1566 6.4860 23 9 6.3579 -3.6715 7.7203 24 9 5.4541 -4.1945 5.6881 25 9 7.0364 -2.5542 5.8470 26 6 4.2996 -1.4835 5.6232 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 0.7085 1.1616 -3.4842 31 1 2.9173 -1.1205 1.0285 32 1 1.0871 0.6161 2.5526 33 1 2.7589 1.0461 2.1183 34 1 2.4326 1.0394 4.8216 35 1 2.0902 0.4753 7.2745 36 1 3.1085 -0.6798 9.1941 37 1 4.8776 -2.3518 8.8304 38 1 4.6351 -1.7096 4.6218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:16 Heat of formation + Delta-G solvation = -175.288675 kcal Electronic energy + Delta-G solvation = -25723.361510 eV Core-core repulsion = 21343.036436 eV Total energy + Delta-G solvation = -4380.325075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.24530 -48.75765 -48.72217 -41.67416 -39.75789 -37.50755 -35.99837 -34.50561 -32.89199 -31.63873 -30.41245 -27.58247 -27.18269 -26.71761 -24.02697 -23.00615 -21.84703 -21.46941 -19.86106 -19.56887 -19.44506 -18.89690 -17.84873 -17.44245 -17.31822 -16.97680 -16.57556 -15.98400 -15.68442 -15.62463 -15.43425 -15.26677 -15.15466 -14.96802 -14.88151 -14.69967 -14.66439 -14.33886 -14.04723 -13.73704 -13.48670 -13.15830 -12.88623 -12.82179 -12.71056 -12.44406 -12.32275 -12.19722 -12.02373 -11.62504 -11.01603 -10.85126 -10.57646 -10.21762 -9.31738 -9.10675 -8.15736 -6.28779 -0.13190 0.15534 1.41773 1.43351 1.48958 1.50988 1.57735 1.89000 2.41151 2.50458 2.65370 2.97850 3.13162 3.34174 3.62094 3.71638 3.85257 4.04733 4.09561 4.33196 4.39355 4.41351 4.45268 4.70539 4.83462 5.06725 5.07662 5.14432 5.18647 5.25946 5.33499 5.44391 5.63937 5.81194 5.83342 6.21240 6.30707 6.40512 6.71066 6.91184 7.08958 7.41227 8.89520 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.002797 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.342464 B =10009.012986 C =11168.908398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.219 3.781 3 H -0.014 1.014 4 C -0.545 4.545 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.272 1.272 12 N -0.683 5.683 13 C 0.045 3.955 14 C 0.517 3.483 15 O -0.544 6.544 16 N -0.661 5.661 17 C 0.137 3.863 18 C -0.104 4.104 19 C -0.088 4.088 20 C -0.092 4.092 21 C -0.179 4.179 22 C 0.507 3.493 23 F -0.171 7.171 24 F -0.187 7.187 25 F -0.184 7.184 26 C -0.103 4.103 27 H 0.021 0.979 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.264 0.736 31 H 0.334 0.666 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.433 0.567 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.159 0.841 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 1.620 25.813 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.111 3.889 3 H 0.003 0.997 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.198 1.198 12 N -0.315 5.315 13 C -0.087 4.087 14 C 0.305 3.695 15 O -0.420 6.420 16 N -0.309 5.309 17 C 0.042 3.958 18 C -0.124 4.124 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.181 4.181 22 C 0.453 3.547 23 F -0.152 7.152 24 F -0.169 7.169 25 F -0.166 7.166 26 C -0.123 4.123 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.090 0.910 34 H 0.273 0.727 35 H 0.189 0.811 36 H 0.198 0.802 37 H 0.176 0.824 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.088 0.664 25.676 26.183 hybrid contribution 1.204 0.135 -1.680 2.071 sum 6.292 0.799 23.996 24.820 Atomic orbital electron populations 1.21580 0.97349 0.98819 0.99675 1.18951 0.92939 0.91161 0.85851 0.99674 1.21549 1.32009 1.12803 0.91935 0.92986 1.25624 0.95090 0.95655 1.01686 1.69973 1.37077 1.23742 1.24369 0.85612 0.78731 0.78647 0.78642 1.20081 1.20474 1.19756 1.60403 1.33188 1.32717 1.05165 1.21884 1.03195 0.94537 0.89086 1.21166 0.76391 0.87157 0.84751 1.90721 1.49264 1.17335 1.84644 1.43400 1.61130 1.17547 1.08820 1.17808 0.93386 0.96067 0.88532 1.21585 0.99955 1.01377 0.89460 1.21442 0.94406 0.94051 1.00746 1.21329 0.97304 0.97858 0.94606 1.19830 1.00366 1.00989 0.96867 1.18432 0.81664 0.80804 0.73785 1.93156 1.91344 1.88085 1.42629 1.93222 1.87674 1.61178 1.74801 1.93200 1.57505 1.83353 1.82504 1.20765 0.95626 0.97471 0.98487 0.95941 0.94874 0.92105 0.92645 0.84829 0.86656 0.91026 0.72710 0.81091 0.80232 0.82383 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 9.19 71.98 0.66 -4.94 16 2 C 0.22 10.92 2.60 44.17 0.11 11.03 16 3 H -0.01 -0.75 7.80 -2.39 -0.02 -0.77 16 4 C -0.54 -30.31 8.59 25.60 0.22 -30.09 16 5 H 0.05 2.92 7.62 -2.91 -0.02 2.90 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -51.51 11.32 21.45 0.24 -51.27 16 8 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 N -0.68 -29.52 5.93 -499.46 -2.96 -32.48 16 13 C 0.05 1.44 5.97 85.55 0.51 1.95 16 14 C 0.52 15.58 7.61 87.66 0.67 16.24 16 15 O -0.54 -21.41 13.89 -3.05 -0.04 -21.45 16 16 N -0.66 -13.40 5.34 -303.50 -1.62 -15.02 16 17 C 0.14 2.85 6.28 38.15 0.24 3.09 16 18 C -0.10 -1.29 9.96 22.39 0.22 -1.07 16 19 C -0.09 -0.91 10.04 22.25 0.22 -0.68 16 20 C -0.09 -1.39 9.43 22.29 0.21 -1.18 16 21 C -0.18 -4.03 5.37 -19.88 -0.11 -4.13 16 22 C 0.51 12.39 3.32 71.23 0.24 12.63 16 23 F -0.17 -3.56 15.97 44.97 0.72 -2.85 16 24 F -0.19 -5.44 17.24 44.97 0.78 -4.66 16 25 F -0.18 -4.83 17.24 44.97 0.78 -4.05 16 26 C -0.10 -2.72 8.20 22.39 0.18 -2.53 16 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.03 1.35 7.45 -2.39 -0.02 1.34 16 29 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 30 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.33 15.19 7.92 -89.69 -0.71 14.48 16 32 H 0.12 3.22 7.44 -2.39 -0.02 3.20 16 33 H 0.07 2.06 8.06 -2.38 -0.02 2.04 16 34 H 0.43 5.07 8.82 -92.71 -0.82 4.26 16 35 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 37 H 0.16 1.67 7.15 -2.91 -0.02 1.65 16 38 H 0.11 3.71 6.41 -2.91 -0.02 3.69 16 Total: -1.00 -70.66 336.94 3.35 -67.31 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.39 Total: 16.76 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 3.83 Total: 1.83 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -4.34 Total: -98.77 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.04 Total: -21.45 kcal Atomic # 9 Polarization: -13.82 SS G_CDS: 2.27 Total: -11.56 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -70.66 3.35 -67.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.984 kcal (2) G-P(sol) polarization free energy of solvation -70.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds