Wall clock time and date at job start Tue Mar 31 2020 10:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47328 * 2 1 4 4 C 1.50707 * 109.46898 * 119.99532 * 2 1 3 5 5 H 1.08001 * 119.99390 * 120.00123 * 4 2 1 6 6 C 1.37870 * 120.00169 * 300.00491 * 4 2 1 7 7 N 1.31518 * 120.00241 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00064 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47324 * 59.99627 * 8 6 4 10 10 H 1.48496 * 109.47121 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47064 * 299.99620 * 8 6 4 12 12 N 1.46897 * 109.47364 * 239.99452 * 2 1 3 13 13 C 1.46903 * 110.99801 * 85.00511 * 12 2 1 14 14 C 1.50700 * 109.47103 * 180.02562 * 13 12 2 15 15 O 1.21281 * 120.00122 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99763 * 180.02562 * 14 13 12 17 17 C 1.39925 * 119.99512 * 184.62501 * 16 14 13 18 18 C 1.38870 * 120.06695 * 144.91470 * 17 16 14 19 19 C 1.38117 * 119.92504 * 180.29460 * 18 17 16 20 20 C 1.38277 * 120.06942 * 359.46211 * 19 18 17 21 21 C 1.50703 * 119.93099 * 180.27797 * 20 19 18 22 22 F 1.39905 * 109.47393 * 270.23781 * 21 20 19 23 23 F 1.39906 * 109.46994 * 30.23159 * 21 20 19 24 24 F 1.39895 * 109.47583 * 150.23361 * 21 20 19 25 25 C 1.38281 * 120.14372 * 0.51604 * 20 19 18 26 26 C 1.38110 * 120.06788 * 359.75887 * 25 20 19 27 27 H 1.09000 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47610 * 300.00247 * 1 2 3 29 29 H 1.09006 * 109.46727 * 59.99997 * 1 2 3 30 30 H 0.97001 * 120.00199 * 180.02562 * 7 6 4 31 31 H 1.00898 * 111.00129 * 208.95408 * 12 2 1 32 32 H 1.08998 * 109.47296 * 59.99731 * 13 12 2 33 33 H 1.09006 * 109.47015 * 299.99917 * 13 12 2 34 34 H 0.97003 * 120.00217 * 4.61241 * 16 14 13 35 35 H 1.08001 * 120.03955 * 0.02562 * 18 17 16 36 36 H 1.08001 * 119.96129 * 179.69790 * 19 18 17 37 37 H 1.07995 * 119.96749 * 179.74638 * 25 20 19 38 38 H 1.08001 * 120.03456 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3211 -1.1202 4.0081 9 1 3.8061 -1.1209 4.0084 10 1 1.8267 -0.4198 5.2205 11 1 1.8255 -2.5201 4.0079 12 7 2.0197 -0.6926 -1.1993 13 6 2.0826 0.2225 -2.3468 14 6 2.5875 -0.5220 -3.5559 15 8 2.8678 -1.6988 -3.4701 16 7 2.7285 0.1203 -4.7324 17 6 3.1043 -0.5912 -5.8772 18 6 2.5924 -0.2338 -7.1177 19 6 2.9606 -0.9420 -8.2449 20 6 3.8464 -1.9987 -8.1407 21 6 4.2508 -2.7652 -9.3736 22 9 3.3629 -3.8277 -9.5744 23 9 4.2180 -1.9142 -10.4835 24 9 5.5466 -3.2655 -9.2076 25 6 4.3582 -2.3567 -6.9070 26 6 3.9896 -1.6562 -5.7752 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.7093 1.1619 3.4844 31 1 2.9173 -1.1206 -1.0286 32 1 2.7590 1.0461 -2.1181 33 1 1.0872 0.6162 -2.5525 34 1 2.5694 1.0757 -4.7856 35 1 1.9039 0.5941 -7.2003 36 1 2.5591 -0.6677 -9.2093 37 1 5.0466 -3.1850 -6.8283 38 1 4.3893 -1.9365 -4.8119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868596.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:31 Heat of formation + Delta-G solvation = -174.817383 kcal Electronic energy + Delta-G solvation = -25220.232540 eV Core-core repulsion = 20839.927902 eV Total energy + Delta-G solvation = -4380.304638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.16454 -48.68142 -48.63355 -41.68314 -39.77504 -37.50714 -36.05041 -34.49945 -32.16579 -32.13200 -30.79101 -27.81821 -27.15568 -25.93840 -24.25431 -23.06313 -21.81268 -21.46896 -19.57418 -19.48010 -19.40528 -19.04346 -18.50485 -17.84172 -17.01685 -16.59712 -16.00005 -15.95721 -15.61584 -15.55032 -15.38581 -15.31524 -15.09320 -14.89735 -14.79668 -14.74073 -14.54326 -14.37266 -14.26509 -14.03805 -13.47590 -13.14899 -12.83933 -12.74215 -12.70010 -12.47734 -12.31227 -12.18819 -12.01389 -11.60978 -10.99546 -10.83033 -10.56408 -10.10160 -9.45492 -9.09566 -8.14551 -6.27510 -0.20478 0.24351 1.42859 1.44511 1.46190 1.51965 1.65245 1.86231 2.42013 2.48160 2.74269 3.02904 3.14479 3.42639 3.60300 3.68488 3.84950 3.86617 4.19178 4.33354 4.40646 4.44743 4.48145 4.82807 4.84829 4.93282 5.08341 5.13863 5.18560 5.20705 5.29347 5.44999 5.65057 5.78117 5.84415 6.22130 6.29688 6.41891 6.72175 6.92806 7.07507 7.42493 8.90625 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.033485 B = 0.002161 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.994502 B =12951.170787 C =13436.220880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.219 3.781 3 H -0.014 1.014 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.276 1.276 12 N -0.683 5.683 13 C 0.045 3.955 14 C 0.520 3.480 15 O -0.540 6.540 16 N -0.662 5.662 17 C 0.173 3.827 18 C -0.138 4.138 19 C -0.048 4.048 20 C -0.214 4.214 21 C 0.515 3.485 22 F -0.183 7.183 23 F -0.176 7.176 24 F -0.182 7.182 25 C -0.057 4.057 26 C -0.145 4.145 27 H 0.022 0.978 28 H 0.060 0.940 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.336 0.664 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.433 0.567 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.143 0.857 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.988 1.303 -24.965 25.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.111 3.889 3 H 0.004 0.996 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.201 1.201 12 N -0.315 5.315 13 C -0.088 4.088 14 C 0.309 3.691 15 O -0.415 6.415 16 N -0.310 5.310 17 C 0.077 3.923 18 C -0.158 4.158 19 C -0.067 4.067 20 C -0.216 4.216 21 C 0.461 3.539 22 F -0.165 7.165 23 F -0.157 7.157 24 F -0.163 7.163 25 C -0.075 4.075 26 C -0.166 4.166 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.273 0.727 35 H 0.189 0.811 36 H 0.181 0.819 37 H 0.160 0.840 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.453 0.350 -24.871 25.269 hybrid contribution 1.030 0.250 1.122 1.543 sum 5.483 0.601 -23.750 24.382 Atomic orbital electron populations 1.21585 0.97476 0.98806 0.99622 1.18949 0.92852 0.91203 0.85907 0.99648 1.21537 1.31921 1.12764 0.91829 0.92848 1.25633 0.95139 0.95673 1.01731 1.69979 1.37152 1.23751 1.24329 0.85609 0.78748 0.78616 0.78630 1.19680 1.20656 1.20097 1.60395 1.33284 1.32710 1.05102 1.21888 1.03139 0.94639 0.89087 1.21131 0.76120 0.87296 0.84568 1.90692 1.48703 1.17610 1.84457 1.43485 1.67993 1.13180 1.06302 1.18198 0.93206 0.93600 0.87282 1.21205 1.01722 1.03288 0.89588 1.21033 0.93426 0.91769 1.00427 1.20008 1.07010 1.02210 0.92385 1.18249 0.74452 0.77446 0.83776 1.93222 1.68754 1.58801 1.95702 1.93185 1.96165 1.70416 1.55944 1.93179 1.39221 1.88388 1.95535 1.20905 0.97594 0.98626 0.90414 1.21282 0.98351 0.97562 0.99378 0.95928 0.92163 0.94966 0.92695 0.84639 0.90852 0.86830 0.72730 0.81073 0.81862 0.83961 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 9.19 71.98 0.66 -4.89 16 2 C 0.22 10.65 2.60 44.17 0.11 10.77 16 3 H -0.01 -0.72 7.80 -2.39 -0.02 -0.74 16 4 C -0.54 -29.48 8.59 25.60 0.22 -29.26 16 5 H 0.05 2.91 7.62 -2.91 -0.02 2.89 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -50.90 11.32 21.45 0.24 -50.65 16 8 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.68 -28.41 5.93 -499.45 -2.96 -31.37 16 13 C 0.04 1.35 5.97 85.56 0.51 1.86 16 14 C 0.52 14.64 7.71 87.66 0.68 15.31 16 15 O -0.54 -19.67 13.64 -3.03 -0.04 -19.71 16 16 N -0.66 -12.51 5.34 -303.50 -1.62 -14.13 16 17 C 0.17 3.44 6.30 38.15 0.24 3.68 16 18 C -0.14 -1.91 9.97 22.39 0.22 -1.69 16 19 C -0.05 -0.68 9.39 22.25 0.21 -0.47 16 20 C -0.21 -3.87 5.45 -19.84 -0.11 -3.98 16 21 C 0.51 9.29 3.36 71.24 0.24 9.53 16 22 F -0.18 -3.66 17.30 44.97 0.78 -2.88 16 23 F -0.18 -2.96 16.46 44.97 0.74 -2.22 16 24 F -0.18 -3.50 16.46 44.97 0.74 -2.76 16 25 C -0.06 -1.16 9.39 22.25 0.21 -0.96 16 26 C -0.15 -3.44 8.70 22.39 0.19 -3.25 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 29 H 0.03 1.30 7.45 -2.38 -0.02 1.28 16 30 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.34 14.53 7.92 -89.70 -0.71 13.82 16 32 H 0.07 1.97 8.05 -2.39 -0.02 1.95 16 33 H 0.11 3.07 7.44 -2.38 -0.02 3.05 16 34 H 0.43 4.70 8.82 -92.71 -0.82 3.88 16 35 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 36 H 0.16 1.46 7.60 -2.91 -0.02 1.44 16 37 H 0.14 2.62 7.60 -2.91 -0.02 2.60 16 38 H 0.13 3.65 6.22 -2.91 -0.02 3.63 16 Total: -1.00 -65.84 336.34 3.35 -62.49 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.39 Total: 18.04 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 3.84 Total: -1.91 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -4.34 Total: -96.16 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 2.26 Total: -7.86 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -65.84 3.35 -62.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868596.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.325 kcal (2) G-P(sol) polarization free energy of solvation -65.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds