Wall clock time and date at job start Tue Mar 31 2020 10:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47328 * 2 1 4 4 C 1.50705 * 109.47438 * 120.00078 * 2 1 3 5 5 H 1.07993 * 120.00470 * 119.99406 * 4 2 1 6 6 C 1.37879 * 119.99372 * 299.99811 * 4 2 1 7 7 N 1.31516 * 120.00122 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99801 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46738 * 59.99981 * 8 6 4 10 10 H 1.48501 * 109.47350 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47028 * 300.00199 * 8 6 4 12 12 N 1.46500 * 109.47224 * 239.99828 * 2 1 3 13 13 C 1.34779 * 120.00282 * 84.99868 * 12 2 1 14 14 O 1.21580 * 119.99580 * 359.97438 * 13 12 2 15 15 C 1.47641 * 119.99964 * 180.02562 * 13 12 2 16 16 C 1.39721 * 120.07277 * 180.02562 * 15 13 12 17 17 C 1.37715 * 119.91626 * 179.97438 * 16 15 13 18 18 C 1.39060 * 120.08129 * 359.97438 * 17 16 15 19 19 N 1.39800 * 119.92197 * 180.02562 * 18 17 16 20 20 C 1.33879 * 122.75832 * 292.41056 * 19 18 17 21 21 O 1.21224 * 125.39721 * 359.97438 * 20 19 18 22 22 C 1.51319 * 109.20212 * 179.84338 * 20 19 18 23 23 C 1.54221 * 103.55618 * 0.38768 * 22 20 19 24 24 C 1.33874 * 122.76566 * 112.70139 * 19 18 17 25 25 O 1.21219 * 125.39392 * 359.97438 * 24 19 18 26 26 C 1.39059 * 120.15651 * 0.02562 * 18 17 16 27 27 C 1.37717 * 120.07916 * 0.02562 * 26 18 17 28 28 H 1.09008 * 109.46902 * 299.99896 * 1 2 3 29 29 H 1.08998 * 109.47584 * 59.99913 * 1 2 3 30 30 H 1.08999 * 109.47367 * 180.02562 * 1 2 3 31 31 H 0.96999 * 119.99461 * 180.02562 * 7 6 4 32 32 H 0.97009 * 120.00080 * 265.00371 * 12 2 1 33 33 H 1.08001 * 120.04248 * 0.24610 * 16 15 13 34 34 H 1.08003 * 119.95690 * 179.97438 * 17 16 15 35 35 H 1.09006 * 110.79552 * 241.77593 * 22 20 19 36 36 H 1.09004 * 110.54310 * 118.87928 * 22 20 19 37 37 H 1.09001 * 110.60350 * 241.26115 * 23 22 20 38 38 H 1.08996 * 110.60545 * 118.29813 * 23 22 20 39 39 H 1.07998 * 119.95745 * 179.97438 * 26 18 17 40 40 H 1.07998 * 120.03554 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6033 8 14 2.3214 -1.1202 4.0080 9 1 3.8064 -1.1208 4.0081 10 1 1.8270 -0.4197 5.2205 11 1 1.8258 -2.5201 4.0078 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0184 -2.3572 14 8 1.8574 1.1612 -2.4119 15 6 2.6386 -0.7146 -3.5627 16 6 2.7732 -0.0190 -4.7670 17 6 3.2326 -0.6715 -5.8894 18 6 3.5629 -2.0208 -5.8251 19 7 4.0294 -2.6797 -6.9664 20 6 3.2585 -2.9085 -8.0368 21 8 2.0958 -2.5837 -8.1471 22 6 4.0695 -3.6339 -9.0883 23 6 5.4544 -3.7952 -8.4291 24 6 5.2821 -3.1389 -7.0767 25 8 6.1421 -3.0436 -6.2278 26 6 3.4302 -2.7162 -4.6282 27 6 2.9704 -2.0704 -3.5020 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.7088 1.1614 3.4843 32 1 2.2490 -1.6319 -1.1526 33 1 2.5214 1.0300 -4.8165 34 1 3.3364 -0.1346 -6.8207 35 1 4.1447 -3.0383 -9.9982 36 1 3.6315 -4.6085 -9.3042 37 1 6.2185 -3.2797 -9.0110 38 1 5.7043 -4.8499 -8.3147 39 1 3.6872 -3.7641 -4.5819 40 1 2.8673 -2.6112 -2.5729 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604575173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:40 Heat of formation + Delta-G solvation = -90.993148 kcal Electronic energy + Delta-G solvation = -25284.702047 eV Core-core repulsion = 21449.889041 eV Total energy + Delta-G solvation = -3834.813006 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.27879 -41.15444 -39.73475 -39.35535 -37.03816 -36.79399 -34.72671 -34.27002 -32.35728 -31.52876 -30.06680 -27.37575 -27.15708 -25.52629 -24.17439 -23.20474 -22.96543 -21.60869 -20.77083 -19.66154 -18.98202 -18.18660 -17.83380 -17.43496 -17.24038 -16.55269 -16.33539 -16.01780 -15.85774 -15.64214 -15.34389 -15.03428 -14.96571 -14.73599 -14.48848 -14.40447 -14.15673 -13.88684 -13.63549 -13.36706 -13.02929 -12.89451 -12.76299 -12.56223 -12.29879 -12.17488 -12.08186 -11.77889 -11.43539 -11.16457 -11.14006 -10.97345 -10.61946 -10.25396 -10.08762 -9.76559 -8.19717 -6.37926 -0.50912 0.14335 0.44241 1.36815 1.44160 1.46631 1.54322 1.55678 1.77085 2.27808 2.50046 2.64598 3.10720 3.21563 3.30368 3.60261 3.62652 3.66232 3.74044 3.94325 4.09241 4.18339 4.25358 4.60681 4.71935 4.74871 4.79381 4.88058 4.93054 4.94701 5.00332 5.01579 5.04774 5.15925 5.38422 5.52223 5.56671 5.64415 5.69087 5.85137 6.04946 6.26010 6.67758 6.69020 6.82471 7.25697 7.41270 8.86690 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.024829 B = 0.002665 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.445649 B =10504.258001 C =11135.096156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.001 0.999 4 C -0.551 4.551 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.262 1.262 12 N -0.695 5.695 13 C 0.540 3.460 14 O -0.593 6.593 15 C -0.132 4.132 16 C -0.059 4.059 17 C -0.111 4.111 18 C 0.118 3.882 19 N -0.538 5.538 20 C 0.517 3.483 21 O -0.515 6.515 22 C -0.134 4.134 23 C -0.134 4.134 24 C 0.517 3.483 25 O -0.514 6.514 26 C -0.108 4.108 27 C -0.070 4.070 28 H 0.070 0.930 29 H 0.012 0.988 30 H 0.042 0.958 31 H 0.267 0.733 32 H 0.405 0.595 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.583 -15.067 -26.357 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.019 0.981 4 C -0.589 4.589 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.187 1.187 12 N -0.344 5.344 13 C 0.328 3.672 14 O -0.476 6.476 15 C -0.135 4.135 16 C -0.079 4.079 17 C -0.130 4.130 18 C 0.028 3.972 19 N -0.279 5.279 20 C 0.310 3.690 21 O -0.388 6.388 22 C -0.173 4.173 23 C -0.173 4.173 24 C 0.310 3.690 25 O -0.387 6.387 26 C -0.127 4.127 27 C -0.089 4.089 28 H 0.089 0.911 29 H 0.031 0.969 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.127 -13.916 -25.829 30.726 hybrid contribution -0.099 0.109 1.487 1.494 sum 9.029 -13.807 -24.342 29.405 Atomic orbital electron populations 1.21913 0.98050 0.99655 0.99731 1.18425 0.91310 0.92037 0.81552 0.98115 1.21497 1.32915 1.13764 0.90675 0.90714 1.25822 0.94774 0.95575 1.02363 1.70047 1.36778 1.23868 1.24795 0.85360 0.78618 0.78743 0.77396 1.19606 1.21084 1.18700 1.46240 1.64373 1.14242 1.09517 1.18722 0.77932 0.86404 0.84175 1.90704 1.53363 1.17635 1.85870 1.20141 1.04113 0.95396 0.93842 1.21190 0.95295 1.00735 0.90685 1.21150 0.99696 0.92895 0.99228 1.18025 0.99809 0.91828 0.87540 1.44772 1.15159 1.52205 1.15732 1.22113 0.86195 0.77351 0.83326 1.90812 1.16996 1.51208 1.79741 1.22636 0.92604 1.04810 0.97273 1.22639 0.99707 1.05894 0.89073 1.22108 0.79114 0.76208 0.91556 1.90814 1.44701 1.55450 1.47691 1.21213 0.99259 1.01097 0.91177 1.21416 0.95415 0.92440 0.99618 0.91148 0.96939 0.93906 0.92430 0.75881 0.84449 0.83474 0.82957 0.83015 0.83071 0.82896 0.82924 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 2 C 0.27 14.46 2.56 44.24 0.11 14.57 16 3 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 4 C -0.55 -29.63 8.73 25.60 0.22 -29.40 16 5 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -53.21 11.32 21.45 0.24 -52.97 16 8 Si 0.97 42.32 29.54 68.60 2.03 44.34 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 12 N -0.70 -30.57 5.02 -449.18 -2.25 -32.82 16 13 C 0.54 23.69 7.73 86.73 0.67 24.36 16 14 O -0.59 -30.98 16.00 -3.97 -0.06 -31.04 16 15 C -0.13 -4.52 5.88 -20.08 -0.12 -4.64 16 16 C -0.06 -1.87 9.58 22.50 0.22 -1.65 16 17 C -0.11 -2.89 9.78 22.34 0.22 -2.68 16 18 C 0.12 2.89 4.93 38.26 0.19 3.08 16 19 N -0.54 -9.54 2.59 -579.68 -1.50 -11.05 16 20 C 0.52 7.59 7.95 87.99 0.70 8.29 16 21 O -0.51 -12.33 17.60 -2.86 -0.05 -12.38 16 22 C -0.13 -0.09 7.03 30.46 0.21 0.13 16 23 C -0.13 -0.08 7.03 30.46 0.21 0.13 16 24 C 0.52 7.55 7.95 87.99 0.70 8.25 16 25 O -0.51 -12.22 17.59 -2.84 -0.05 -12.27 16 26 C -0.11 -2.63 9.77 22.34 0.22 -2.41 16 27 C -0.07 -1.92 9.53 22.50 0.21 -1.70 16 28 H 0.07 3.98 6.07 -2.38 -0.01 3.97 16 29 H 0.01 0.60 8.14 -2.39 -0.02 0.59 16 30 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.40 14.84 6.56 -92.70 -0.61 14.23 16 33 H 0.14 4.41 7.64 -2.91 -0.02 4.39 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.15 -0.61 8.14 -2.38 -0.02 -0.63 16 36 H 0.15 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.15 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.15 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 40 H 0.15 3.62 6.39 -2.91 -0.02 3.60 16 Total: -1.00 -83.13 349.24 3.72 -79.42 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.48 Total: 17.55 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 4.89 Total: 11.21 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -3.52 Total: -96.84 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.16 Total: -55.69 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -83.13 3.72 -79.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604575173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.575 kcal (2) G-P(sol) polarization free energy of solvation -83.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds