Wall clock time and date at job start Tue Mar 31 2020 10:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00278 * 2 1 4 4 O 1.20827 * 119.99990 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00127 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.46934 * 35.62686 * 5 3 2 7 7 C 1.52999 * 109.47294 * 275.62774 * 5 3 2 8 8 N 1.46502 * 109.47277 * 155.62611 * 5 3 2 9 9 C 1.34777 * 120.00242 * 204.24655 * 8 5 3 10 10 O 1.21666 * 119.99701 * 5.80231 * 9 8 5 11 11 C 1.46889 * 120.00058 * 185.79792 * 9 8 5 12 12 C 1.36121 * 125.43663 * 173.86730 * 11 9 8 13 13 C 1.41701 * 107.74978 * 180.27842 * 12 11 9 14 14 C 1.40014 * 133.35478 * 179.77685 * 13 12 11 15 15 C 1.36576 * 119.83518 * 179.97438 * 14 13 12 16 16 C 1.38859 * 120.59579 * 359.96375 * 15 14 13 17 17 C 1.37841 * 120.63535 * 0.02562 * 16 15 14 18 18 C 1.39090 * 119.81276 * 0.02562 * 17 16 15 19 19 N 1.37835 * 133.16109 * 180.02562 * 18 17 16 20 20 C 1.36891 * 125.62066 * 359.96524 * 19 18 17 21 21 H 1.08002 * 120.00046 * 132.55720 * 20 19 18 22 22 C 1.39012 * 120.00413 * 312.55953 * 20 19 18 23 23 N 1.31347 * 119.99593 * 340.39542 * 22 20 19 24 24 Si 1.86800 * 120.00170 * 160.39208 * 22 20 19 25 25 H 1.48502 * 109.47146 * 275.02769 * 24 22 20 26 26 H 1.48497 * 109.46946 * 35.02948 * 24 22 20 27 27 H 1.48499 * 109.46723 * 155.02908 * 24 22 20 28 28 H 1.08992 * 109.47347 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46959 * 300.00057 * 1 2 3 30 30 H 1.08997 * 109.47009 * 59.99811 * 1 2 3 31 31 H 1.09000 * 109.47255 * 180.02562 * 7 5 3 32 32 H 1.08996 * 109.47046 * 299.99825 * 7 5 3 33 33 H 1.09005 * 109.47180 * 60.00179 * 7 5 3 34 34 H 0.97003 * 119.99425 * 24.25110 * 8 5 3 35 35 H 1.07998 * 126.12496 * 0.02562 * 12 11 9 36 36 H 1.08007 * 120.08240 * 359.97438 * 14 13 12 37 37 H 1.07998 * 119.70281 * 179.97438 * 15 14 13 38 38 H 1.08000 * 119.67874 * 180.02562 * 16 15 14 39 39 H 1.07998 * 120.09512 * 179.97438 * 17 16 15 40 40 H 0.96998 * 120.00540 * 354.79051 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9731 0.4594 -0.5977 7 6 4.0825 1.1605 1.4363 8 7 3.9885 2.5566 -0.5695 9 6 5.2120 2.6785 -1.1215 10 8 5.9251 1.7001 -1.2419 11 6 5.6844 3.9924 -1.5777 12 6 6.9356 4.2645 -2.0394 13 6 6.9846 5.6419 -2.3685 14 6 7.9903 6.4740 -2.8750 15 6 7.7310 7.7968 -3.0951 16 6 6.4767 8.3261 -2.8218 17 6 5.4705 7.5269 -2.3229 18 6 5.7111 6.1770 -2.0896 19 7 4.9285 5.1490 -1.6091 20 6 3.6197 5.2570 -1.2227 21 1 2.8933 4.5368 -1.5692 22 6 3.2256 6.2935 -0.3844 23 7 4.1189 6.9281 0.3398 24 14 1.4257 6.7838 -0.2880 25 1 1.1136 7.7389 -1.3814 26 1 0.5751 5.5747 -0.4290 27 1 1.1577 7.4275 1.0231 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 5.1710 1.2180 1.4368 32 1 3.6758 1.9758 2.0346 33 1 3.7685 0.2067 1.8605 34 1 3.3873 3.3176 -0.5497 35 1 7.7471 3.5581 -2.1338 36 1 8.9687 6.0709 -3.0911 37 1 8.5084 8.4368 -3.4854 38 1 6.2877 9.3741 -3.0018 39 1 4.4983 7.9478 -2.1130 40 1 5.0405 6.6257 0.3478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609161713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:06 Heat of formation + Delta-G solvation = -64.630050 kcal Electronic energy + Delta-G solvation = -26697.286450 eV Core-core repulsion = 22863.616634 eV Total energy + Delta-G solvation = -3833.669816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88067 -40.48771 -38.70773 -36.62794 -36.15574 -34.84326 -33.70660 -31.01475 -30.68144 -28.95737 -28.09066 -27.83771 -24.85775 -24.75641 -23.02209 -21.11226 -20.80987 -19.99917 -19.63740 -18.70077 -17.58605 -16.99518 -16.44300 -16.30795 -15.71303 -15.27415 -14.97998 -14.83724 -14.19474 -14.08923 -13.87226 -13.65106 -13.29237 -13.17370 -13.08238 -12.72790 -12.48112 -12.27711 -12.21586 -12.10744 -11.89604 -11.55334 -11.15735 -10.94447 -10.89125 -10.53315 -10.44597 -10.35940 -10.35252 -9.93604 -9.62602 -9.19232 -8.88963 -8.79485 -7.55094 -7.11522 -6.79242 -4.76719 1.63304 2.12346 2.47004 2.56485 2.90941 3.10665 3.15050 3.31963 3.69063 3.85307 4.12440 4.31355 4.64449 4.65669 4.83645 4.99020 5.04937 5.09720 5.17224 5.38292 5.47379 5.64471 5.71771 5.78253 5.83620 5.99740 6.14109 6.24090 6.26639 6.34734 6.48927 6.69254 6.76131 6.84596 6.91176 7.24247 7.33210 7.41708 7.57072 7.67165 7.70082 7.77232 8.04713 8.17577 8.59915 8.76511 9.06193 10.07014 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.005188 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.153890 B = 5396.288580 C = 6922.913219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.457 3.543 4 O -0.489 6.489 5 C 0.152 3.848 6 H 0.119 0.881 7 C -0.157 4.157 8 N -0.717 5.717 9 C 0.603 3.397 10 O -0.554 6.554 11 C -0.020 4.020 12 C -0.162 4.162 13 C -0.129 4.129 14 C -0.080 4.080 15 C -0.159 4.159 16 C -0.133 4.133 17 C -0.082 4.082 18 C 0.076 3.924 19 N -0.266 5.266 20 C -0.455 4.455 21 H 0.103 0.897 22 C 0.037 3.963 23 N -0.819 5.819 24 Si 1.072 2.928 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.274 1.274 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.427 0.573 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 -7.030 0.251 8.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.298 3.702 4 O -0.374 6.374 5 C 0.045 3.955 6 H 0.137 0.863 7 C -0.215 4.215 8 N -0.382 5.382 9 C 0.393 3.607 10 O -0.433 6.433 11 C -0.134 4.134 12 C -0.189 4.189 13 C -0.134 4.134 14 C -0.099 4.099 15 C -0.179 4.179 16 C -0.153 4.153 17 C -0.102 4.102 18 C -0.038 4.038 19 N 0.070 4.930 20 C -0.582 4.582 21 H 0.120 0.880 22 C -0.181 4.181 23 N -0.444 5.444 24 Si 0.895 3.105 25 H -0.201 1.201 26 H -0.195 1.195 27 H -0.199 1.199 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.277 0.723 35 H 0.153 0.847 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.149 -6.335 1.045 8.230 hybrid contribution 0.516 -0.660 -0.615 1.040 sum -4.633 -6.995 0.429 8.401 Atomic orbital electron populations 1.23290 0.76231 1.03618 1.02802 1.86496 1.23488 1.33092 1.84206 1.23864 0.91995 0.81688 0.72605 1.90734 1.66721 1.36080 1.43888 1.20256 0.86175 0.90875 0.98227 0.86298 1.22122 1.03335 1.02798 0.93233 1.46714 1.18245 1.13081 1.60140 1.17205 0.80512 0.87058 0.75903 1.90725 1.56478 1.38106 1.57969 1.20146 0.92680 0.87910 1.12670 1.20419 0.95489 0.94426 1.08583 1.18017 0.94304 0.93681 1.07393 1.20131 0.97174 0.93118 0.99463 1.20340 0.96937 0.95136 1.05441 1.20612 0.93327 0.98497 1.02911 1.20121 0.99375 0.90642 1.00026 1.18502 0.91699 0.91132 1.02467 1.40139 1.08323 1.04461 1.40110 1.20473 0.82537 1.20013 1.35163 0.87992 1.26830 1.07988 0.92574 0.90685 1.70600 1.05926 1.38152 1.29734 0.83446 0.71802 0.77476 0.77765 1.20064 1.19453 1.19898 0.88039 0.91758 0.91757 0.90020 0.91452 0.90781 0.72345 0.84663 0.87368 0.87477 0.87159 0.86639 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.68 10.57 -39.25 -0.41 -5.10 16 3 C 0.46 7.30 7.17 36.00 0.26 7.55 16 4 O -0.49 -9.21 15.74 -18.75 -0.30 -9.51 16 5 C 0.15 2.48 3.12 -69.09 -0.22 2.27 16 6 H 0.12 1.85 7.52 -51.93 -0.39 1.46 16 7 C -0.16 -2.21 9.46 37.16 0.35 -1.86 16 8 N -0.72 -14.52 5.00 -56.18 -0.28 -14.80 16 9 C 0.60 13.45 7.72 -12.76 -0.10 13.35 16 10 O -0.55 -12.60 16.49 5.22 0.09 -12.52 16 11 C -0.02 -0.47 6.77 -82.25 -0.56 -1.03 16 12 C -0.16 -3.67 10.55 -39.02 -0.41 -4.08 16 13 C -0.13 -2.93 6.16 -106.89 -0.66 -3.59 16 14 C -0.08 -1.57 10.06 -39.52 -0.40 -1.96 16 15 C -0.16 -2.93 9.97 -39.95 -0.40 -3.32 16 16 C -0.13 -2.60 10.02 -39.50 -0.40 -2.99 16 17 C -0.08 -1.86 9.00 -39.41 -0.35 -2.21 16 18 C 0.08 1.85 5.52 -83.83 -0.46 1.39 16 19 N -0.27 -6.61 2.46 -56.08 -0.14 -6.74 16 20 C -0.46 -11.23 7.50 -15.01 -0.11 -11.35 16 21 H 0.10 2.50 6.58 -52.49 -0.35 2.16 16 22 C 0.04 0.89 4.41 -17.47 -0.08 0.81 16 23 N -0.82 -21.30 12.62 55.50 0.70 -20.60 16 24 Si 1.07 21.75 29.96 -169.99 -5.09 16.66 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.62 8.13 -51.92 -0.42 0.20 16 30 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.43 9.34 3.66 -40.82 -0.15 9.19 16 35 H 0.14 2.80 8.06 -52.49 -0.42 2.38 16 36 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.12 2.70 7.29 -52.49 -0.38 2.32 16 40 H 0.29 7.93 7.35 -40.82 -0.30 7.63 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -29.27 345.60 -7.28 -36.55 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -4.59 Total: 16.47 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -2.46 Total: -5.62 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.28 Total: -42.14 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.62 Total: -27.12 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.09 Total: 16.66 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.27 -7.28 -36.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609161713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.079 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds