Wall clock time and date at job start Tue Mar 31 2020 10:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00278 * 2 1 4 4 O 1.20827 * 119.99990 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00127 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.46934 * 35.62686 * 5 3 2 7 7 C 1.52999 * 109.47294 * 275.62774 * 5 3 2 8 8 N 1.46502 * 109.47277 * 155.62611 * 5 3 2 9 9 C 1.34777 * 120.00242 * 204.24655 * 8 5 3 10 10 O 1.21666 * 119.99701 * 5.80231 * 9 8 5 11 11 C 1.46889 * 120.00058 * 185.79792 * 9 8 5 12 12 C 1.36121 * 125.43663 * 173.86730 * 11 9 8 13 13 C 1.41701 * 107.74978 * 180.27842 * 12 11 9 14 14 C 1.40014 * 133.35478 * 179.77685 * 13 12 11 15 15 C 1.36576 * 119.83518 * 179.97438 * 14 13 12 16 16 C 1.38859 * 120.59579 * 359.96375 * 15 14 13 17 17 C 1.37841 * 120.63535 * 0.02562 * 16 15 14 18 18 C 1.39090 * 119.81276 * 0.02562 * 17 16 15 19 19 N 1.37835 * 133.16109 * 180.02562 * 18 17 16 20 20 C 1.36891 * 125.62066 * 359.96524 * 19 18 17 21 21 H 1.08002 * 120.00046 * 132.55720 * 20 19 18 22 22 C 1.39012 * 120.00413 * 312.55953 * 20 19 18 23 23 N 1.31347 * 119.99593 * 340.39542 * 22 20 19 24 24 Si 1.86800 * 120.00170 * 160.39208 * 22 20 19 25 25 H 1.48502 * 109.47146 * 275.02769 * 24 22 20 26 26 H 1.48497 * 109.46946 * 35.02948 * 24 22 20 27 27 H 1.48499 * 109.46723 * 155.02908 * 24 22 20 28 28 H 1.08992 * 109.47347 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46959 * 300.00057 * 1 2 3 30 30 H 1.08997 * 109.47009 * 59.99811 * 1 2 3 31 31 H 1.09000 * 109.47255 * 180.02562 * 7 5 3 32 32 H 1.08996 * 109.47046 * 299.99825 * 7 5 3 33 33 H 1.09005 * 109.47180 * 60.00179 * 7 5 3 34 34 H 0.97003 * 119.99425 * 24.25110 * 8 5 3 35 35 H 1.07998 * 126.12496 * 0.02562 * 12 11 9 36 36 H 1.08007 * 120.08240 * 359.97438 * 14 13 12 37 37 H 1.07998 * 119.70281 * 179.97438 * 15 14 13 38 38 H 1.08000 * 119.67874 * 180.02562 * 16 15 14 39 39 H 1.07998 * 120.09512 * 179.97438 * 17 16 15 40 40 H 0.96998 * 120.00540 * 354.79051 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9731 0.4594 -0.5977 7 6 4.0825 1.1605 1.4363 8 7 3.9885 2.5566 -0.5695 9 6 5.2120 2.6785 -1.1215 10 8 5.9251 1.7001 -1.2419 11 6 5.6844 3.9924 -1.5777 12 6 6.9356 4.2645 -2.0394 13 6 6.9846 5.6419 -2.3685 14 6 7.9903 6.4740 -2.8750 15 6 7.7310 7.7968 -3.0951 16 6 6.4767 8.3261 -2.8218 17 6 5.4705 7.5269 -2.3229 18 6 5.7111 6.1770 -2.0896 19 7 4.9285 5.1490 -1.6091 20 6 3.6197 5.2570 -1.2227 21 1 2.8933 4.5368 -1.5692 22 6 3.2256 6.2935 -0.3844 23 7 4.1189 6.9281 0.3398 24 14 1.4257 6.7838 -0.2880 25 1 1.1136 7.7389 -1.3814 26 1 0.5751 5.5747 -0.4290 27 1 1.1577 7.4275 1.0231 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 5.1710 1.2180 1.4368 32 1 3.6758 1.9758 2.0346 33 1 3.7685 0.2067 1.8605 34 1 3.3873 3.3176 -0.5497 35 1 7.7471 3.5581 -2.1338 36 1 8.9687 6.0709 -3.0911 37 1 8.5084 8.4368 -3.4854 38 1 6.2877 9.3741 -3.0018 39 1 4.4983 7.9478 -2.1130 40 1 5.0405 6.6257 0.3478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609161713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:05 Heat of formation + Delta-G solvation = -80.827921 kcal Electronic energy + Delta-G solvation = -26697.988843 eV Core-core repulsion = 22863.616634 eV Total energy + Delta-G solvation = -3834.372209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.51096 -41.84345 -40.31799 -37.85677 -37.80249 -36.36218 -35.48443 -32.58453 -32.30087 -30.60787 -29.70263 -28.80229 -26.65910 -26.10376 -24.52457 -22.79994 -22.25790 -21.51213 -21.31824 -20.39429 -18.99331 -18.33560 -17.87980 -17.58450 -17.49081 -16.71901 -16.65072 -16.41092 -15.82583 -15.54367 -15.46545 -14.96674 -14.88192 -14.71228 -14.46933 -14.31317 -13.88012 -13.74465 -13.58107 -13.49440 -13.11718 -12.86504 -12.73921 -12.48238 -12.16719 -12.15816 -12.00338 -11.92640 -11.66652 -11.57701 -11.34989 -10.99435 -10.60427 -10.39326 -9.39443 -8.87715 -8.53497 -6.67001 -0.05223 0.84713 0.94056 1.19386 1.30001 1.44161 1.50728 1.71581 2.13275 2.21505 2.36589 2.57567 2.85558 3.17400 3.49916 3.78903 3.86362 3.94323 4.08188 4.25317 4.28275 4.31484 4.40596 4.52234 4.58979 4.61209 4.65852 4.68656 4.84123 4.98401 5.04281 5.11310 5.14864 5.21607 5.26271 5.40467 5.67966 5.72189 5.81190 6.00499 6.05125 6.35444 6.42349 6.46338 6.79218 7.03898 7.24882 8.12245 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.005188 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.153890 B = 5396.288580 C = 6922.913219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.349 6.349 3 C 0.466 3.534 4 O -0.523 6.523 5 C 0.143 3.857 6 H 0.129 0.871 7 C -0.149 4.149 8 N -0.718 5.718 9 C 0.601 3.399 10 O -0.565 6.565 11 C -0.048 4.048 12 C -0.163 4.163 13 C -0.149 4.149 14 C -0.080 4.080 15 C -0.152 4.152 16 C -0.116 4.116 17 C -0.118 4.118 18 C 0.054 3.946 19 N -0.286 5.286 20 C -0.461 4.461 21 H 0.095 0.905 22 C 0.008 3.992 23 N -0.840 5.840 24 Si 1.113 2.887 25 H -0.261 1.261 26 H -0.265 1.265 27 H -0.273 1.273 28 H 0.142 0.858 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.420 0.580 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.097 0.903 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -7.110 -0.322 7.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.265 6.265 3 C 0.309 3.691 4 O -0.411 6.411 5 C 0.038 3.962 6 H 0.147 0.853 7 C -0.208 4.208 8 N -0.380 5.380 9 C 0.391 3.609 10 O -0.446 6.446 11 C -0.162 4.162 12 C -0.191 4.191 13 C -0.154 4.154 14 C -0.098 4.098 15 C -0.171 4.171 16 C -0.136 4.136 17 C -0.138 4.138 18 C -0.060 4.060 19 N 0.048 4.952 20 C -0.588 4.588 21 H 0.112 0.888 22 C -0.204 4.204 23 N -0.466 5.466 24 Si 0.931 3.069 25 H -0.186 1.186 26 H -0.189 1.189 27 H -0.197 1.197 28 H 0.160 0.840 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.267 0.733 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.115 0.885 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.756 -6.455 0.470 8.032 hybrid contribution 0.471 -0.675 -0.527 0.977 sum -4.286 -7.130 -0.057 8.319 Atomic orbital electron populations 1.23679 0.74038 1.06263 1.02753 1.86484 1.25489 1.31130 1.83370 1.23673 0.91658 0.82017 0.71786 1.90723 1.67307 1.37368 1.45734 1.20552 0.87033 0.89176 0.99489 0.85330 1.22091 1.02561 1.04427 0.91671 1.46689 1.17347 1.14373 1.59581 1.17119 0.81088 0.86586 0.76146 1.90692 1.56886 1.38154 1.58820 1.20579 0.93548 0.88548 1.13512 1.20718 0.95532 0.95052 1.07789 1.18410 0.94732 0.93980 1.08236 1.20584 0.97751 0.93423 0.98092 1.20843 0.97295 0.95153 1.03765 1.21094 0.92922 0.99684 0.99923 1.20202 0.99945 0.90709 1.02934 1.18964 0.92451 0.91734 1.02846 1.40243 1.08525 1.04984 1.41442 1.20499 0.82827 1.20182 1.35245 0.88792 1.27971 1.10389 0.92269 0.89722 1.70708 1.05080 1.39248 1.31582 0.82960 0.68181 0.77628 0.78134 1.18563 1.18938 1.19729 0.84024 0.91519 0.92207 0.90944 0.92423 0.87105 0.73270 0.83076 0.84034 0.82896 0.83924 0.88471 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.35 -8.63 10.57 -51.41 -0.54 -9.18 16 3 C 0.47 14.74 7.17 71.23 0.51 15.25 16 4 O -0.52 -19.95 15.74 21.96 0.35 -19.60 16 5 C 0.14 4.70 3.12 44.24 0.14 4.83 16 6 H 0.13 3.95 7.52 -2.38 -0.02 3.94 16 7 C -0.15 -4.15 9.46 71.98 0.68 -3.47 16 8 N -0.72 -30.03 5.00 -449.88 -2.25 -32.28 16 9 C 0.60 27.64 7.72 86.51 0.67 28.31 16 10 O -0.57 -26.10 16.49 -4.24 -0.07 -26.17 16 11 C -0.05 -2.39 6.77 39.91 0.27 -2.12 16 12 C -0.16 -7.51 10.55 22.63 0.24 -7.27 16 13 C -0.15 -6.74 6.16 -21.34 -0.13 -6.87 16 14 C -0.08 -2.92 10.06 22.31 0.22 -2.69 16 15 C -0.15 -5.00 9.97 22.03 0.22 -4.78 16 16 C -0.12 -4.28 10.02 22.32 0.22 -4.06 16 17 C -0.12 -5.40 9.00 22.38 0.20 -5.20 16 18 C 0.05 2.67 5.52 39.06 0.22 2.89 16 19 N -0.29 -14.80 2.46 -331.34 -0.81 -15.61 16 20 C -0.46 -23.78 7.50 84.09 0.63 -23.15 16 21 H 0.09 4.86 6.58 -2.91 -0.02 4.84 16 22 C 0.01 0.41 4.41 84.95 0.37 0.79 16 23 N -0.84 -45.39 12.62 21.67 0.27 -45.11 16 24 Si 1.11 44.88 29.96 68.60 2.06 46.94 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 28 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.18 8.13 -2.38 -0.02 1.16 16 30 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.42 19.18 3.66 -92.71 -0.34 18.85 16 35 H 0.15 6.24 8.06 -2.91 -0.02 6.22 16 36 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 39 H 0.10 4.71 7.29 -2.91 -0.02 4.69 16 40 H 0.27 15.52 7.35 -92.71 -0.68 14.84 16 Total: -1.00 -66.24 345.60 5.49 -60.75 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: 0.83 Total: 46.17 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 5.66 Total: -5.90 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -2.79 Total: -93.01 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -0.27 Total: -54.95 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.06 Total: 46.94 kcal Total: -66.24 5.49 -60.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609161713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.078 kcal (2) G-P(sol) polarization free energy of solvation -66.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds