Wall clock time and date at job start Tue Mar 31 2020 11:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.47092 * 2 1 4 4 C 1.34234 * 117.00268 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99482 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00046 * 180.02562 * 4 3 2 7 7 N 1.46500 * 109.46626 * 185.19737 * 6 4 3 8 8 C 1.34779 * 119.99637 * 185.15159 * 7 6 4 9 9 O 1.21665 * 119.99942 * 4.57416 * 8 7 6 10 10 C 1.46886 * 119.99832 * 184.56983 * 8 7 6 11 11 C 1.36128 * 125.43588 * 185.62693 * 10 8 7 12 12 C 1.41703 * 107.75023 * 180.24310 * 11 10 8 13 13 C 1.40012 * 133.35270 * 179.81733 * 12 11 10 14 14 C 1.36584 * 119.83043 * 179.97438 * 13 12 11 15 15 C 1.38847 * 120.60153 * 359.97438 * 14 13 12 16 16 C 1.37845 * 120.63099 * 359.97438 * 15 14 13 17 17 C 1.39078 * 119.81652 * 0.02562 * 16 15 14 18 18 N 1.37845 * 133.16306 * 180.02562 * 17 16 15 19 19 C 1.36885 * 125.62060 * 359.95104 * 18 17 16 20 20 H 1.08009 * 119.99762 * 127.04992 * 19 18 17 21 21 C 1.39005 * 119.99993 * 307.04578 * 19 18 17 22 22 N 1.31354 * 119.99910 * 3.37490 * 21 19 18 23 23 Si 1.86806 * 119.99991 * 183.09962 * 21 19 18 24 24 H 1.48503 * 109.47117 * 275.27440 * 23 21 19 25 25 H 1.48498 * 109.47063 * 35.27938 * 23 21 19 26 26 H 1.48500 * 109.46787 * 155.27675 * 23 21 19 27 27 H 1.09000 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46430 * 299.99697 * 1 2 3 29 29 H 1.08997 * 109.47407 * 59.99400 * 1 2 3 30 30 H 1.09005 * 109.46898 * 240.00555 * 2 1 3 31 31 H 1.08995 * 109.47607 * 119.99848 * 2 1 3 32 32 H 1.08993 * 109.46992 * 65.19861 * 6 4 3 33 33 H 1.09001 * 109.47088 * 305.19460 * 6 4 3 34 34 H 0.96999 * 120.00521 * 5.14911 * 7 6 4 35 35 H 1.08002 * 126.12692 * 0.02562 * 11 10 8 36 36 H 1.07995 * 120.08712 * 359.94525 * 13 12 11 37 37 H 1.08000 * 119.69938 * 180.02562 * 14 13 12 38 38 H 1.07997 * 119.68731 * 179.97438 * 15 14 13 39 39 H 1.08009 * 120.09381 * 179.97438 * 16 15 14 40 40 H 0.96993 * 119.99734 * 354.17469 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3784 2.8630 -0.1259 8 6 6.1201 3.9854 -0.0436 9 8 5.5884 5.0480 0.2178 10 6 7.5702 3.9256 -0.2695 11 6 8.4374 4.9625 -0.1091 12 6 9.7353 4.4941 -0.4315 13 6 10.9977 5.0993 -0.4532 14 6 12.0943 4.3707 -0.8167 15 6 11.9699 3.0324 -1.1654 16 6 10.7379 2.4144 -1.1506 17 6 9.6067 3.1357 -0.7840 18 7 8.2727 2.8062 -0.6745 19 6 7.7319 1.5753 -0.9313 20 1 7.1139 1.0915 -0.1893 21 6 7.9779 0.9480 -2.1471 22 7 8.7826 1.5056 -3.0229 23 14 7.1702 -0.6918 -2.5324 24 1 7.9839 -1.7920 -1.9556 25 1 5.8073 -0.7227 -1.9435 26 1 7.0774 -0.8640 -4.0045 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.6617 3.4374 0.9333 33 1 3.5118 3.5001 -0.8393 34 1 5.8098 2.0060 -0.2683 35 1 8.1815 5.9640 0.2042 36 1 11.1041 6.1396 -0.1837 37 1 13.0671 4.8395 -0.8323 38 1 12.8468 2.4704 -1.4509 39 1 10.6510 1.3731 -1.4239 40 1 9.1382 2.3929 -2.8585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609165192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:53 Heat of formation + Delta-G solvation = -81.647783 kcal Electronic energy + Delta-G solvation = -26213.024638 eV Core-core repulsion = 22378.616878 eV Total energy + Delta-G solvation = -3834.407761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.52007 -41.75874 -40.27512 -37.96817 -37.79365 -35.96464 -35.37326 -32.78287 -32.35725 -31.11352 -30.25166 -28.94941 -26.65416 -25.02273 -23.91795 -22.77827 -22.33253 -21.87316 -21.37805 -20.30921 -18.96631 -18.20316 -18.00042 -17.62458 -17.50398 -16.75546 -16.63779 -16.40697 -16.02647 -15.70877 -15.44110 -15.19025 -14.86889 -14.76527 -14.28881 -14.14548 -13.94482 -13.77386 -13.65775 -13.53597 -12.97574 -12.78844 -12.54857 -12.47956 -12.17856 -12.10083 -12.01319 -11.79217 -11.60086 -11.58496 -11.38976 -11.02793 -10.56376 -10.35415 -9.45535 -8.83403 -8.43713 -6.75991 -0.05665 0.91025 0.93060 1.19733 1.22817 1.41788 1.50717 1.71962 2.12687 2.25857 2.37995 2.64782 2.78365 3.14984 3.46256 3.85116 3.97269 4.04419 4.05612 4.13770 4.21317 4.30248 4.32305 4.40220 4.61145 4.68467 4.75434 4.82964 4.91317 5.02527 5.06311 5.12339 5.17782 5.25574 5.33868 5.41555 5.68563 5.77460 5.80213 5.99025 6.03909 6.34023 6.43333 6.49253 6.80042 7.03842 7.24652 8.21278 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.004372 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.940692 B = 6402.965780 C = 7897.149869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.349 6.349 4 C 0.465 3.535 5 O -0.526 6.526 6 C 0.121 3.879 7 N -0.722 5.722 8 C 0.600 3.400 9 O -0.566 6.566 10 C -0.042 4.042 11 C -0.159 4.159 12 C -0.151 4.151 13 C -0.078 4.078 14 C -0.152 4.152 15 C -0.115 4.115 16 C -0.119 4.119 17 C 0.053 3.947 18 N -0.295 5.295 19 C -0.453 4.453 20 H 0.099 0.901 21 C -0.002 4.002 22 N -0.865 5.865 23 Si 1.116 2.884 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.274 1.274 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.420 0.580 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.097 0.903 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.882 -1.819 4.042 9.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.265 6.265 4 C 0.308 3.692 5 O -0.415 6.415 6 C -0.003 4.003 7 N -0.385 5.385 8 C 0.390 3.610 9 O -0.446 6.446 10 C -0.155 4.155 11 C -0.187 4.187 12 C -0.155 4.155 13 C -0.097 4.097 14 C -0.170 4.170 15 C -0.135 4.135 16 C -0.139 4.139 17 C -0.061 4.061 18 N 0.038 4.962 19 C -0.580 4.580 20 H 0.116 0.884 21 C -0.211 4.211 22 N -0.495 5.495 23 Si 0.934 3.066 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.199 1.199 27 H 0.120 0.880 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.268 0.732 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.160 0.840 39 H 0.115 0.885 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.383 -2.972 3.012 10.293 hybrid contribution 0.345 0.541 0.927 1.128 sum -9.038 -2.431 3.939 10.154 Atomic orbital electron populations 1.21831 0.89738 1.04566 1.03958 1.23429 0.97459 0.78643 1.02856 1.86470 1.22221 1.34326 1.83485 1.23533 0.81617 0.92058 0.71986 1.90729 1.61064 1.43586 1.46098 1.20838 0.80842 0.91010 1.07592 1.46556 1.06456 1.12251 1.73203 1.17045 0.84808 0.83349 0.75840 1.90705 1.72861 1.29833 1.51224 1.20615 0.92044 0.89010 1.13871 1.20773 0.90769 0.98314 1.08830 1.18450 0.95012 0.93547 1.08513 1.20599 0.89769 1.00240 0.99096 1.20855 0.99267 0.93887 1.03029 1.21103 0.95714 0.95947 1.00749 1.20251 0.91324 0.99133 1.03191 1.19109 0.85637 0.95857 1.05457 1.40261 1.03241 1.07132 1.45606 1.20561 1.37457 0.95520 1.04422 0.88372 1.28096 0.94380 1.07931 0.90710 1.70699 1.24722 1.16457 1.37602 0.82924 0.76677 0.69862 0.77171 1.18651 1.18364 1.19899 0.87973 0.90902 0.91125 0.91390 0.90960 0.85003 0.85792 0.73206 0.82761 0.83833 0.82781 0.83990 0.88494 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 10.29 71.98 0.74 -1.03 16 2 C 0.05 0.97 6.19 71.98 0.45 1.42 16 3 O -0.35 -8.57 10.22 -51.46 -0.53 -9.09 16 4 C 0.46 14.11 8.02 71.24 0.57 14.68 16 5 O -0.53 -19.57 15.45 21.97 0.34 -19.23 16 6 C 0.12 3.70 6.29 85.63 0.54 4.24 16 7 N -0.72 -29.43 5.40 -470.63 -2.54 -31.97 16 8 C 0.60 27.33 7.77 86.51 0.67 28.00 16 9 O -0.57 -25.90 16.82 -4.24 -0.07 -25.97 16 10 C -0.04 -2.08 6.77 39.91 0.27 -1.81 16 11 C -0.16 -7.30 10.55 22.63 0.24 -7.06 16 12 C -0.15 -6.84 6.16 -21.34 -0.13 -6.97 16 13 C -0.08 -2.87 10.06 22.31 0.22 -2.64 16 14 C -0.15 -5.02 9.97 22.03 0.22 -4.80 16 15 C -0.12 -4.30 10.02 22.32 0.22 -4.08 16 16 C -0.12 -5.55 8.25 22.38 0.18 -5.37 16 17 C 0.05 2.66 5.24 39.06 0.20 2.86 16 18 N -0.30 -15.45 2.64 -331.34 -0.87 -16.33 16 19 C -0.45 -23.57 7.75 84.09 0.65 -22.92 16 20 H 0.10 5.04 6.20 -2.91 -0.02 5.02 16 21 C 0.00 -0.09 5.16 84.95 0.44 0.34 16 22 N -0.87 -47.94 12.36 21.67 0.27 -47.67 16 23 Si 1.12 45.59 29.92 68.60 2.05 47.65 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.41 8.13 -2.38 -0.02 1.39 16 31 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 32 H 0.13 3.49 8.10 -2.39 -0.02 3.47 16 33 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.42 18.62 3.34 -92.71 -0.31 18.31 16 35 H 0.15 6.30 8.06 -2.91 -0.02 6.27 16 36 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 37 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 38 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 39 H 0.10 4.87 7.17 -2.91 -0.02 4.85 16 40 H 0.28 16.05 5.51 -92.71 -0.51 15.54 16 Total: -1.00 -67.92 344.00 5.17 -62.75 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: 1.03 Total: 45.01 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.49 Total: -5.14 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -3.15 Total: -95.97 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -0.26 Total: -54.30 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.05 Total: 47.65 kcal Total: -67.92 5.17 -62.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609165192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.899 kcal (2) G-P(sol) polarization free energy of solvation -67.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds