Wall clock time and date at job start Tue Mar 31 2020 11:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99657 * 2 1 4 4 C 1.34770 * 120.00464 * 179.97438 * 2 1 3 5 5 O 1.21285 * 119.99900 * 0.02562 * 4 2 1 6 6 C 1.50703 * 120.00341 * 180.02562 * 4 2 1 7 7 O 1.45196 * 109.47292 * 184.00708 * 6 4 2 8 8 C 1.34865 * 117.00126 * 177.64629 * 7 6 4 9 9 O 1.21596 * 119.99746 * 5.49944 * 8 7 6 10 10 C 1.46709 * 120.00067 * 185.49730 * 8 7 6 11 11 C 1.36222 * 125.44776 * 175.35677 * 10 8 7 12 12 C 1.41657 * 107.74058 * 180.02562 * 11 10 8 13 13 C 1.40046 * 133.33557 * 179.97438 * 12 11 10 14 14 C 1.36561 * 119.83331 * 179.97438 * 13 12 11 15 15 C 1.38869 * 120.60241 * 359.97438 * 14 13 12 16 16 C 1.37845 * 120.63207 * 0.28674 * 15 14 13 17 17 C 1.39088 * 119.81691 * 359.47102 * 16 15 14 18 18 N 1.37827 * 133.15021 * 180.19006 * 17 16 15 19 19 C 1.36866 * 125.62176 * 0.29061 * 18 17 16 20 20 H 1.07998 * 120.00561 * 136.66402 * 19 18 17 21 21 C 1.39025 * 119.99856 * 316.66039 * 19 18 17 22 22 N 1.31347 * 119.99904 * 157.88284 * 21 19 18 23 23 Si 1.86797 * 120.00038 * 337.87793 * 21 19 18 24 24 H 1.48493 * 109.47041 * 95.63154 * 23 21 19 25 25 H 1.48498 * 109.47169 * 215.63436 * 23 21 19 26 26 H 1.48499 * 109.47220 * 335.63149 * 23 21 19 27 27 H 1.08996 * 109.47594 * 270.00178 * 1 2 3 28 28 H 1.09002 * 109.47357 * 30.00985 * 1 2 3 29 29 H 1.09009 * 109.46390 * 150.00376 * 1 2 3 30 30 H 1.09004 * 109.46917 * 239.99590 * 3 2 1 31 31 H 1.08998 * 109.47232 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47391 * 119.99738 * 3 2 1 33 33 H 1.08998 * 109.47276 * 64.00454 * 6 4 2 34 34 H 1.09001 * 109.46912 * 304.01038 * 6 4 2 35 35 H 1.07999 * 126.12937 * 0.03919 * 11 10 8 36 36 H 1.08004 * 120.08437 * 359.97438 * 13 12 11 37 37 H 1.08004 * 119.70542 * 180.02562 * 14 13 12 38 38 H 1.07994 * 119.68520 * 180.02562 * 15 14 13 39 39 H 1.08004 * 120.09185 * 179.65826 * 16 15 14 40 40 H 0.97004 * 119.99671 * 184.99303 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5326 -2.2175 0.0005 6 6 3.6460 -1.1671 0.0011 7 8 4.1301 -2.5326 -0.0941 8 6 5.4662 -2.7058 -0.1551 9 8 6.2092 -1.7516 -0.0290 10 6 6.0231 -4.0454 -0.3736 11 6 7.3435 -4.3341 -0.5427 12 6 7.4595 -5.7342 -0.7243 13 6 8.5481 -6.5886 -0.9390 14 6 8.3407 -7.9310 -1.0801 15 6 7.0581 -8.4591 -1.0122 16 6 5.9703 -7.6377 -0.8070 17 6 6.1569 -6.2678 -0.6554 18 7 5.2917 -5.2168 -0.4396 19 6 3.9327 -5.3163 -0.3124 20 1 3.4200 -4.7586 0.4574 21 6 3.2119 -6.1352 -1.1742 22 7 2.0279 -6.5804 -0.8204 23 14 3.9273 -6.6024 -2.8353 24 1 4.5976 -7.9234 -2.7317 25 1 2.8368 -6.6781 -3.8403 26 1 4.9163 -5.5770 -3.2544 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5140 29 1 -0.3632 -0.8901 -0.5138 30 1 2.8241 1.3265 -0.8900 31 1 1.4891 2.0972 -0.0005 32 1 2.8241 1.3266 0.8900 33 1 4.0090 -0.7164 0.9248 34 1 4.0096 -0.5924 -0.8508 35 1 8.1564 -3.6230 -0.5389 36 1 9.5492 -6.1869 -0.9929 37 1 9.1818 -8.5881 -1.2451 38 1 6.9111 -9.5230 -1.1253 39 1 4.9761 -8.0571 -0.7612 40 1 1.5565 -7.2093 -1.3889 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729768375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:39 Heat of formation + Delta-G solvation = -58.793388 kcal Electronic energy + Delta-G solvation = -26415.362264 eV Core-core repulsion = 22581.945544 eV Total energy + Delta-G solvation = -3833.416720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.53359 -41.45009 -40.51091 -37.84048 -37.50788 -36.65482 -35.41335 -33.13800 -31.34180 -30.78338 -29.97784 -28.46562 -26.79738 -26.62202 -25.04865 -22.82309 -22.31362 -21.05337 -20.65628 -20.10996 -19.03597 -18.07738 -17.99757 -17.64686 -17.47134 -16.80395 -16.65987 -16.58618 -16.20593 -15.60055 -15.16992 -14.97407 -14.73130 -14.62659 -14.49682 -14.10008 -13.87080 -13.77035 -13.65832 -13.55555 -13.46438 -13.18459 -12.88117 -12.80492 -12.49653 -12.31121 -12.01423 -11.94085 -11.87346 -11.52617 -11.30026 -11.03881 -10.45917 -9.81230 -9.09609 -8.82542 -8.68871 -6.47961 -0.22824 0.85930 0.98677 1.13962 1.16791 1.22907 1.29259 1.37488 1.97931 2.10982 2.15349 2.40357 2.75406 3.13888 3.31793 3.78475 3.90576 3.93910 4.01369 4.24050 4.29386 4.35621 4.36126 4.45014 4.55714 4.63970 4.70738 4.75542 4.85782 4.88209 4.98148 5.08818 5.10658 5.26237 5.38678 5.42678 5.68163 5.79000 5.83566 5.95272 6.09756 6.12593 6.39780 6.59723 6.83846 6.99568 7.15080 8.27607 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.004637 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.429196 B = 6037.063520 C = 7311.998509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.616 5.616 3 C 0.065 3.935 4 C 0.502 3.498 5 O -0.562 6.562 6 C 0.044 3.956 7 O -0.335 6.335 8 C 0.546 3.454 9 O -0.521 6.521 10 C -0.049 4.049 11 C -0.135 4.135 12 C -0.144 4.144 13 C -0.068 4.068 14 C -0.150 4.150 15 C -0.106 4.106 16 C -0.142 4.142 17 C 0.041 3.959 18 N -0.282 5.282 19 C -0.350 4.350 20 H 0.088 0.912 21 C 0.055 3.945 22 N -0.858 5.858 23 Si 0.917 3.083 24 H -0.220 1.220 25 H -0.274 1.274 26 H -0.277 1.277 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.101 0.899 40 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 10.404 -1.461 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.351 5.351 3 C -0.076 4.076 4 C 0.289 3.711 5 O -0.439 6.439 6 C -0.033 4.033 7 O -0.250 6.250 8 C 0.394 3.606 9 O -0.412 6.412 10 C -0.160 4.160 11 C -0.163 4.163 12 C -0.149 4.149 13 C -0.086 4.086 14 C -0.169 4.169 15 C -0.127 4.127 16 C -0.162 4.162 17 C -0.073 4.073 18 N 0.052 4.948 19 C -0.477 4.477 20 H 0.106 0.894 21 C -0.156 4.156 22 N -0.488 5.488 23 Si 0.739 3.261 24 H -0.143 1.143 25 H -0.200 1.200 26 H -0.202 1.202 27 H 0.081 0.919 28 H 0.131 0.869 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.094 0.906 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.187 0.813 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.165 0.835 39 H 0.119 0.881 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.087 10.146 -1.400 11.028 hybrid contribution -0.843 0.102 -0.374 0.927 sum 3.244 10.249 -1.773 10.895 Atomic orbital electron populations 1.21837 0.77623 1.03738 1.02625 1.47786 1.08036 1.06072 1.73229 1.22244 0.98398 0.83722 1.03216 1.20473 0.89528 0.84235 0.76901 1.90862 1.70577 1.32972 1.49501 1.22970 0.91698 0.82093 1.06545 1.86978 1.23736 1.30808 1.83440 1.19982 0.80111 0.88065 0.72476 1.90757 1.60269 1.41203 1.49007 1.19687 0.92736 0.84357 1.19196 1.20797 0.93109 0.94902 1.07443 1.18357 0.92951 0.93505 1.10064 1.20663 0.97278 0.92872 0.97798 1.20926 0.97068 0.95120 1.03744 1.21149 0.91853 0.99789 0.99861 1.20342 0.99948 0.90350 1.05569 1.18943 0.89931 0.90343 1.08079 1.40400 1.05063 1.03247 1.46051 1.19031 0.79301 1.31165 1.18217 0.89439 1.25968 0.94874 0.94140 1.00593 1.69726 1.14262 1.26076 1.38779 0.86265 0.78628 0.81858 0.79370 1.14302 1.19996 1.20240 0.91931 0.86920 0.93449 0.90801 0.86801 0.90646 0.85992 0.86103 0.81329 0.82973 0.82250 0.83467 0.88138 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.75 10.41 127.77 1.33 3.08 16 2 N -0.62 -14.98 3.27 -871.88 -2.85 -17.84 16 3 C 0.07 0.84 9.74 127.77 1.24 2.09 16 4 C 0.50 18.14 7.75 87.66 0.68 18.82 16 5 O -0.56 -27.94 16.09 15.72 0.25 -27.68 16 6 C 0.04 1.48 4.79 71.24 0.34 1.82 16 7 O -0.33 -15.78 7.68 -51.40 -0.39 -16.17 16 8 C 0.55 25.23 7.90 70.03 0.55 25.78 16 9 O -0.52 -22.25 16.65 19.52 0.33 -21.93 16 10 C -0.05 -2.39 6.76 39.87 0.27 -2.12 16 11 C -0.14 -5.74 10.55 22.64 0.24 -5.50 16 12 C -0.14 -6.06 6.16 -21.34 -0.13 -6.19 16 13 C -0.07 -2.18 10.06 22.32 0.22 -1.95 16 14 C -0.15 -4.37 9.97 22.03 0.22 -4.15 16 15 C -0.11 -3.62 10.02 22.33 0.22 -3.39 16 16 C -0.14 -6.27 6.97 22.38 0.16 -6.12 16 17 C 0.04 1.98 5.21 39.06 0.20 2.19 16 18 N -0.28 -15.22 2.38 -331.41 -0.79 -16.01 16 19 C -0.35 -20.87 8.97 84.10 0.75 -20.12 16 20 H 0.09 5.86 7.28 -2.91 -0.02 5.84 16 21 C 0.06 3.18 4.81 84.95 0.41 3.59 16 22 N -0.86 -50.98 13.95 21.67 0.30 -50.67 16 23 Si 0.92 45.05 24.64 68.60 1.69 46.74 16 24 H -0.22 -9.71 5.78 99.48 0.58 -9.13 16 25 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 26 H -0.28 -14.43 7.11 99.48 0.71 -13.73 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.11 1.37 7.92 -2.39 -0.02 1.35 16 29 H 0.05 1.32 7.42 -2.38 -0.02 1.30 16 30 H 0.07 0.85 7.73 -2.38 -0.02 0.83 16 31 H 0.11 0.75 7.79 -2.39 -0.02 0.73 16 32 H 0.07 0.85 7.98 -2.39 -0.02 0.83 16 33 H 0.12 3.41 8.03 -2.39 -0.02 3.39 16 34 H 0.12 3.35 7.69 -2.39 -0.02 3.33 16 35 H 0.17 5.98 8.06 -2.91 -0.02 5.95 16 36 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 37 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 38 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.10 4.74 6.07 -2.91 -0.02 4.72 16 40 H 0.29 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -81.82 341.34 6.18 -75.64 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.94 Total: 20.09 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 6.72 Total: 7.83 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -3.34 Total: -84.51 kcal Atomic # 8 Polarization: -65.97 SS G_CDS: 0.18 Total: -65.78 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.69 Total: 46.74 kcal Total: -81.82 6.18 -75.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729768375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.845 kcal (2) G-P(sol) polarization free energy of solvation -81.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds